Ggra2174.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2174.t1
Unique Name	Ggra2174.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	310

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:547206..548135 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	161934.XP_010689727.1
PFAMs	zf-RING_2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K11982,ko:K19041
GOs	GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue	3.29e-06
EggNOG OGs	KOG0800@1\|root,KOG0800@2759\|Eukaryota,37V90@33090\|Viridiplantae,3GIPG@35493\|Streptophyta
EC	2.3.2.27
Description	finger protein
COG category	O
BRITE	ko00000,ko01000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2174	Ggra2174	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 547206..548135 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2174.t1.start1	Ggra2174.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 547206..547208 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2174.t1.CDS1	Ggra2174.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 547206..548135 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2174.t1.exon1	Ggra2174.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 547206..548135 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2174.t1.stop1	Ggra2174.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 548133..548135 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2174.t1	Ggra2174.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 547206..548135 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:547206..548135+
coding sequence from alignment at tig00000900_pilon:547206..548135+

mRNA sequence

>Ggra2174.t1 ID=Ggra2174.t1|Name=Ggra2174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=310bp
MELSSTAFPSAVRTLASIVASITIIITIYLGYRKCVRDRDDSFIADRSRE
QQFGASNEEPGNAYSDEFLPVYVGDGRYVYVSRNELPRNPPHINRRNFNI
PPRFDASTLKQFEAINEEKRYSCPICLEELQEEPVSAGQCLHLMHSSCLT
SWLNKDINSNCPVCRVVIEESASLDKLSGKVMELASSPHSVREAGLGLNM
ETGIDRQDDVRLPMTENVGSIQVETGAASQVIGSEAAESGSENNGERGNS
QQENPGWLSMNEVHTQRGVDRGDDASVLPTQDAIGSLTVGGSRRVIGTGI
DQEVAVADK*

spliced messenger RNA

>Ggra2174.t1 ID=Ggra2174.t1|Name=Ggra2174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000900_pilon:547206..548135+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATTGTCTTCAACCGCGTTTCCTTCCGCAGTTCGCACGTTAGCTTC
GATTGTTGCATCCATAACAATCATTATTACCATTTACCTCGGTTACCGGA
AGTGCGTAAGGGACCGGGACGATAGTTTTATTGCAGACCGGAGCCGAGAA
CAGCAATTTGGCGCTTCGAACGAGGAACCTGGGAATGCGTACTCGGATGA
GTTTTTACCTGTGTATGTTGGGGATGGAAGATATGTCTACGTATCGCGAA
ACGAGCTTCCTCGTAATCCCCCGCATATCAATCGCCGGAATTTCAACATT
CCACCACGTTTTGACGCGAGCACTCTTAAACAATTCGAAGCGATAAACGA
AGAGAAACGGTATTCATGCCCAATATGTCTCGAGGAACTGCAAGAAGAAC
CAGTAAGTGCTGGACAATGCTTGCATCTTATGCACAGCAGTTGCCTCACC
AGCTGGTTGAACAAGGATATAAATTCAAACTGCCCCGTATGTCGGGTTGT
TATTGAAGAAAGCGCATCTCTCGACAAGTTAAGCGGTAAGGTAATGGAAT
TGGCTTCCTCACCTCACTCTGTGCGTGAAGCGGGGTTGGGTTTGAATATG
GAAACAGGTATTGACAGGCAGGACGACGTGAGACTGCCTATGACTGAGAA
TGTGGGAAGTATACAGGTAGAAACAGGAGCTGCATCACAAGTGATTGGCA
GTGAAGCGGCAGAAAGCGGCAGCGAAAACAACGGGGAACGGGGTAATTCA
CAACAAGAAAACCCAGGATGGCTTTCGATGAATGAAGTTCATACCCAGCG
TGGGGTAGACAGAGGAGATGACGCTAGCGTATTGCCGACGCAAGATGCAA
TAGGTTCATTAACTGTTGGTGGATCCAGGAGGGTGATTGGGACAGGTATC
GACCAAGAAGTGGCTGTGGCGGACAAATGA

protein sequence of Ggra2174.t1

>Ggra2174.t1 ID=Ggra2174.t1|Name=Ggra2174.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=310bp
MELSSTAFPSAVRTLASIVASITIIITIYLGYRKCVRDRDDSFIADRSRE
QQFGASNEEPGNAYSDEFLPVYVGDGRYVYVSRNELPRNPPHINRRNFNI
PPRFDASTLKQFEAINEEKRYSCPICLEELQEEPVSAGQCLHLMHSSCLT
SWLNKDINSNCPVCRVVIEESASLDKLSGKVMELASSPHSVREAGLGLNM
ETGIDRQDDVRLPMTENVGSIQVETGAASQVIGSEAAESGSENNGERGNS
QQENPGWLSMNEVHTQRGVDRGDDASVLPTQDAIGSLTVGGSRRVIGTGI
DQEVAVADK*

mRNA from alignment at tig00000900_pilon:547206..548135+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2174.t1 ID=Ggra2174.t1|Name=Ggra2174.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000900_pilon:547206..548135+ (Gracilaria gracilis GNS1m male)
ATGGAATTGTCTTCAACCGCGTTTCCTTCCGCAGTTCGCACGTTAGCTTC
GATTGTTGCATCCATAACAATCATTATTACCATTTACCTCGGTTACCGGA
AGTGCGTAAGGGACCGGGACGATAGTTTTATTGCAGACCGGAGCCGAGAA
CAGCAATTTGGCGCTTCGAACGAGGAACCTGGGAATGCGTACTCGGATGA
GTTTTTACCTGTGTATGTTGGGGATGGAAGATATGTCTACGTATCGCGAA
ACGAGCTTCCTCGTAATCCCCCGCATATCAATCGCCGGAATTTCAACATT
CCACCACGTTTTGACGCGAGCACTCTTAAACAATTCGAAGCGATAAACGA
AGAGAAACGGTATTCATGCCCAATATGTCTCGAGGAACTGCAAGAAGAAC
CAGTAAGTGCTGGACAATGCTTGCATCTTATGCACAGCAGTTGCCTCACC
AGCTGGTTGAACAAGGATATAAATTCAAACTGCCCCGTATGTCGGGTTGT
TATTGAAGAAAGCGCATCTCTCGACAAGTTAAGCGGTAAGGTAATGGAAT
TGGCTTCCTCACCTCACTCTGTGCGTGAAGCGGGGTTGGGTTTGAATATG
GAAACAGGTATTGACAGGCAGGACGACGTGAGACTGCCTATGACTGAGAA
TGTGGGAAGTATACAGGTAGAAACAGGAGCTGCATCACAAGTGATTGGCA
GTGAAGCGGCAGAAAGCGGCAGCGAAAACAACGGGGAACGGGGTAATTCA
CAACAAGAAAACCCAGGATGGCTTTCGATGAATGAAGTTCATACCCAGCG
TGGGGTAGACAGAGGAGATGACGCTAGCGTATTGCCGACGCAAGATGCAA
TAGGTTCATTAACTGTTGGTGGATCCAGGAGGGTGATTGGGACAGGTATC
GACCAAGAAGTGGCTGTGGCGGACAAATGA

Coding sequence (CDS) from alignment at tig00000900_pilon:547206..548135+

>Ggra2174.t1 ID=Ggra2174.t1|Name=Ggra2174.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=930bp|location=Sequence derived from alignment at tig00000900_pilon:547206..548135+ (Gracilaria gracilis GNS1m male)
ATGGAATTGTCTTCAACCGCGTTTCCTTCCGCAGTTCGCACGTTAGCTTC
GATTGTTGCATCCATAACAATCATTATTACCATTTACCTCGGTTACCGGA
AGTGCGTAAGGGACCGGGACGATAGTTTTATTGCAGACCGGAGCCGAGAA
CAGCAATTTGGCGCTTCGAACGAGGAACCTGGGAATGCGTACTCGGATGA
GTTTTTACCTGTGTATGTTGGGGATGGAAGATATGTCTACGTATCGCGAA
ACGAGCTTCCTCGTAATCCCCCGCATATCAATCGCCGGAATTTCAACATT
CCACCACGTTTTGACGCGAGCACTCTTAAACAATTCGAAGCGATAAACGA
AGAGAAACGGTATTCATGCCCAATATGTCTCGAGGAACTGCAAGAAGAAC
CAGTAAGTGCTGGACAATGCTTGCATCTTATGCACAGCAGTTGCCTCACC
AGCTGGTTGAACAAGGATATAAATTCAAACTGCCCCGTATGTCGGGTTGT
TATTGAAGAAAGCGCATCTCTCGACAAGTTAAGCGGTAAGGTAATGGAAT
TGGCTTCCTCACCTCACTCTGTGCGTGAAGCGGGGTTGGGTTTGAATATG
GAAACAGGTATTGACAGGCAGGACGACGTGAGACTGCCTATGACTGAGAA
TGTGGGAAGTATACAGGTAGAAACAGGAGCTGCATCACAAGTGATTGGCA
GTGAAGCGGCAGAAAGCGGCAGCGAAAACAACGGGGAACGGGGTAATTCA
CAACAAGAAAACCCAGGATGGCTTTCGATGAATGAAGTTCATACCCAGCG
TGGGGTAGACAGAGGAGATGACGCTAGCGTATTGCCGACGCAAGATGCAA
TAGGTTCATTAACTGTTGGTGGATCCAGGAGGGTGATTGGGACAGGTATC
GACCAAGAAGTGGCTGTGGCGGACAAATGA