Ggra2168.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2168.t1
Unique NameGgra2168.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length153
Homology
BLAST of Ggra2168.t1 vs. uniprot
Match: A0A2V3J036 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J036_9FLOR)

HSP 1 Score: 264 bits (675), Expect = 7.350e-89
Identity = 125/152 (82.24%), Postives = 140/152 (92.11%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERLEDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFKYVEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRKK 152
            MAGIIFSDSFKI R+DWDEKT+S+ KKFDKVSRIEGKSEAY+TE+VLDVNTEIYPV   E I++LITERLED PPNPD+P GYNP+KPLGDRA+ Y+YIM GKIFKY E+ QRANIYFS+GGLLMKLHGESNILLSHIF+VDADVYLF+RKK
Sbjct:    1 MAGIIFSDSFKIRRLDWDEKTKSVIKKFDKVSRIEGKSEAYDTELVLDVNTEIYPVSADEVIDILITERLEDTPPNPDDPEGYNPIKPLGDRADAYEYIMHGKIFKYHEERQRANIYFSFGGLLMKLHGESNILLSHIFRVDADVYLFVRKK 152          
BLAST of Ggra2168.t1 vs. uniprot
Match: DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFABD58 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFABD58)

HSP 1 Score: 116 bits (291), Expect = 1.670e-30
Identity = 65/158 (41.14%), Postives = 99/158 (62.66%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERL-EDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFKY------VEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAGI+F D F +  +D       + KKFD+VSR+  +SE+++ E++LDVNT++YPV +G+   ++I   L EDG P+  +   YNPV     RA+ ++Y+M GK+++        E   R + Y SYGGLLM+L G++N L  H F+VD  VYL ++K
Sbjct:    1 MAGILFEDIFDVKDID------PLGKKFDRVSRLHCESESFKMELILDVNTQVYPVDLGDKFRLVIASTLYEDGTPDDGD---YNPVDDKPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDTRVYLLMKK 147          
BLAST of Ggra2168.t1 vs. uniprot
Match: A0A3P8RBI7 (RNA polymerase II subunit H n=1 Tax=Astatotilapia calliptera TaxID=8154 RepID=A0A3P8RBI7_ASTCA)

HSP 1 Score: 115 bits (289), Expect = 7.500e-30
Identity = 67/158 (42.41%), Postives = 98/158 (62.03%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERL-EDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFKY------VEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAGI+F D F +  +D D       KKFD+VSR+  +SE+++ +++LDVN +IYPV +G+   ++I   L EDG P+  E   YNP      RA+ +DY+M GK++K        E   R + Y SYGGLLM+L G++N L  H F+VD+ VYL ++K
Sbjct:   30 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTPDDGE---YNPQDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDSRVYLLMKK 176          
BLAST of Ggra2168.t1 vs. uniprot
Match: Q568H8 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=128 Tax=Gnathostomata TaxID=7776 RepID=Q568H8_DANRE)

HSP 1 Score: 114 bits (286), Expect = 9.490e-30
Identity = 66/158 (41.77%), Postives = 98/158 (62.03%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERL-EDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFKY------VEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAGI+F D F +  +D D       KKFD+VSR+  +SE+++ +++LDVN +IYPV +G+   ++I   L EDG P+  E   YNP      RA+ +DY+M GK+++        E   R + Y SYGGLLM+L G++N L  H F+VD+ VYL ++K
Sbjct:    1 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTPDDGE---YNPQDDRPSRADQFDYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDSRVYLLMKK 147          
BLAST of Ggra2168.t1 vs. uniprot
Match: E3TEV3 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=3 Tax=Clupeocephala TaxID=186625 RepID=E3TEV3_ICTPU)

HSP 1 Score: 114 bits (284), Expect = 1.900e-29
Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERL-EDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFKY------VEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAGI+F D F +  +D D       KKFD+VSR+  +SE+++ +++LDVNT+IYPV +G+   ++I   L EDG  +  E   YNP      RA+ +DY M GK++K        E   R + Y SYGGLLM+L G++N L  H F+VD+ VYL ++K
Sbjct:    1 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNTQIYPVELGDKFRLVIASTLYEDGTSDDGE---YNPTDDRPSRADQFDYAMYGKVYKIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDSRVYLLMKK 147          
BLAST of Ggra2168.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4FCA (LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4FCA)

HSP 1 Score: 112 bits (280), Expect = 7.430e-29
Identity = 64/157 (40.76%), Postives = 97/157 (61.78%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERL-EDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIF-----KYVEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAG++F D F +  +D D       KKFD+VSR+  +SE+++ +++LDVNT++YP+ + +   ++I   L EDG P   E   YNP      RA+ ++Y+M GK++     KY  D  R   Y SYGGLLM+L G++N L  H F+VD+ VYL ++K
Sbjct:    1 MAGVLFEDIFDVKDIDPD------GKKFDRVSRLFCESESFKMDLILDVNTQLYPMDLADKFRMVIATTLNEDGTPADSE---YNPTDTGPSRADSFEYVMYGKVYRLEGDKYPPDSSRLAAYVSYGGLLMRLQGDANNL--HGFEVDSHVYLLMKK 146          
BLAST of Ggra2168.t1 vs. uniprot
Match: A0A6P5A3K3 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5A3K3_BRABE)

HSP 1 Score: 112 bits (280), Expect = 7.640e-29
Identity = 63/158 (39.87%), Postives = 97/158 (61.39%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERL-EDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFK------YVEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAG++F D F +  +D D       KKFD+VSR+  +SE+++ E++LDVNT++YPV +G+   +++   L EDG P+  E   + P      RA+ ++Y+M GKI++      + E   R + Y SYGGLLM+L G++N L  H  +VD  VYL I+K
Sbjct:    1 MAGVLFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMELILDVNTQVYPVDIGDKFRLVLASTLREDGAPDDGE---FIPTDGTPSRADQFEYVMYGKIYRIEGDDTHTESATRLSAYVSYGGLLMRLQGDANNL--HGMEVDKHVYLLIKK 147          
BLAST of Ggra2168.t1 vs. uniprot
Match: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EAF92C1 (DNA-directed RNA polymerases I, II, and III subunit RPABC3-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EAF92C1)

HSP 1 Score: 111 bits (278), Expect = 1.490e-28
Identity = 66/158 (41.77%), Postives = 99/158 (62.66%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERL-EDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFKYVE------DMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAG++F D F +  +D D       KKFD+VSR+  +SE+++ +++LDVNT+IYPV +G+   ++I   L EDG P   E   YNP +    RA+ ++Y+M GK+++ +E      D  R   Y SYGGLLM+L G+ N L  H F+VD+ VYL ++K
Sbjct:    1 MAGVLFEDIFDVKDIDPD------GKKFDRVSRLFCESESFKMDLILDVNTQIYPVELGDKFRLVIATTLREDGYPEDGE---YNPTQQGPSRADQFEYVMFGKVYR-IEGDDGGMDSSRLAAYISYGGLLMRLKGDPNNL--HGFEVDSHVYLMMKK 146          
BLAST of Ggra2168.t1 vs. uniprot
Match: A0A1B0CWD7 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=10 Tax=Diptera TaxID=7147 RepID=A0A1B0CWD7_LUTLO)

HSP 1 Score: 111 bits (278), Expect = 1.530e-28
Identity = 62/158 (39.24%), Postives = 99/158 (62.66%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIE-VLITERLEDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFK------YVEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAG++F D F +  MD +       KKFD+VSR+  +SE+++ +++LD+N  +YP+ +G+    VL T   EDG P   E   YNP++  G RA+ ++Y+M GKI++      + E   R + Y S+GGLLM+L G++N L  H F+VD ++YL ++K
Sbjct:    1 MAGVLFEDIFNVKDMDPE------GKKFDRVSRLHCESESFKMDLILDINCWLYPMELGDKFRLVLATTLYEDGHPGSGE---YNPLETEGTRADSFEYVMYGKIYRIEGDEAHTEASSRLSAYVSFGGLLMRLQGDANNL--HGFEVDQNIYLLMKK 147          
BLAST of Ggra2168.t1 vs. uniprot
Match: A0A649UEU5 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=7 Tax=Decapoda TaxID=6683 RepID=A0A649UEU5_PENVA)

HSP 1 Score: 110 bits (274), Expect = 6.320e-28
Identity = 67/158 (42.41%), Postives = 98/158 (62.03%), Query Frame = 0
Query:    1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIE-VLITERLEDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFKY------VEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
            MAGI+F D F +  +D D       KKFD+VSR+  +SE+++ +++LD+N+ IYP+  G+    VL T   EDG P  D P  YNP++    RA+ +DY+M GKI++       VE   R + Y SYGGLLM+L G++N L  H F+VD  +YL ++K
Sbjct:    1 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDINSMIYPMDFGDKFRLVLATTLREDGYPT-DGP-DYNPLETGPSRADPFDYVMYGKIYRIEGDDGLVETSGRLSAYVSYGGLLMRLQGDANNL--HGFEVDKHIYLLMKK 148          
The following BLAST results are available for this feature:
BLAST of Ggra2168.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0367.350e-8982.24DNA-directed RNA polymerases I, II, and III subuni... [more]
DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFABD581.670e-3041.14DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A3P8RBI77.500e-3042.41RNA polymerase II subunit H n=1 Tax=Astatotilapia ... [more]
Q568H89.490e-3041.77DNA-directed RNA polymerases I, II, and III subuni... [more]
E3TEV31.900e-2942.41DNA-directed RNA polymerases I, II, and III subuni... [more]
LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4FCA7.430e-2940.76LOW QUALITY PROTEIN: DNA-directed RNA polymerases ... [more]
A0A6P5A3K37.640e-2939.87DNA-directed RNA polymerases I, II, and III subuni... [more]
DNA-directed RNA polymerases I, II, and III subunit RPABC3-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EAF92C11.490e-2841.77DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A1B0CWD71.530e-2839.24DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A649UEU56.320e-2842.41DNA-directed RNA polymerases I, II, and III subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 2..151
e-value: 2.4E-36
score: 136.7
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..152
e-value: 4.0E-35
score: 118.9
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 9..151
e-value: 2.1E-32
score: 112.2
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..151
NoneNo IPR availableGENE3D2.40.50.140coord: 6..152
e-value: 3.1E-37
score: 129.8
NoneNo IPR availablePANTHERPTHR10917:SF0DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..151
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:538196..538901 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2168.t1Ggra2168.t1Gracilaria gracilis GNS1m malemRNAtig00000900_pilon 538196..538901 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2168.t1 ID=Ggra2168.t1|Name=Ggra2168.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=153bp
MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVN
TEIYPVGVGETIEVLITERLEDGPPNPDEPRGYNPVKPLGDRANMYDYIM
RGKIFKYVEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIR
KK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold