Ggra2168.t1 (polypeptide) Gracilaria gracilis GNS1m male
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Overview
Homology
BLAST of Ggra2168.t1 vs. uniprot
Match: A0A2V3J036 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J036_9FLOR) HSP 1 Score: 264 bits (675), Expect = 7.350e-89 Identity = 125/152 (82.24%), Postives = 140/152 (92.11%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERLEDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFKYVEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRKK 152
MAGIIFSDSFKI R+DWDEKT+S+ KKFDKVSRIEGKSEAY+TE+VLDVNTEIYPV E I++LITERLED PPNPD+P GYNP+KPLGDRA+ Y+YIM GKIFKY E+ QRANIYFS+GGLLMKLHGESNILLSHIF+VDADVYLF+RKK
Sbjct: 1 MAGIIFSDSFKIRRLDWDEKTKSVIKKFDKVSRIEGKSEAYDTELVLDVNTEIYPVSADEVIDILITERLEDTPPNPDDPEGYNPIKPLGDRADAYEYIMHGKIFKYHEERQRANIYFSFGGLLMKLHGESNILLSHIFRVDADVYLFVRKK 152
BLAST of Ggra2168.t1 vs. uniprot
Match: DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFABD58 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFABD58) HSP 1 Score: 116 bits (291), Expect = 1.670e-30 Identity = 65/158 (41.14%), Postives = 99/158 (62.66%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERL-EDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFKY------VEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAGI+F D F + +D + KKFD+VSR+ +SE+++ E++LDVNT++YPV +G+ ++I L EDG P+ + YNPV RA+ ++Y+M GK+++ E R + Y SYGGLLM+L G++N L H F+VD VYL ++K
Sbjct: 1 MAGILFEDIFDVKDID------PLGKKFDRVSRLHCESESFKMELILDVNTQVYPVDLGDKFRLVIASTLYEDGTPDDGD---YNPVDDKPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDTRVYLLMKK 147
BLAST of Ggra2168.t1 vs. uniprot
Match: A0A3P8RBI7 (RNA polymerase II subunit H n=1 Tax=Astatotilapia calliptera TaxID=8154 RepID=A0A3P8RBI7_ASTCA) HSP 1 Score: 115 bits (289), Expect = 7.500e-30 Identity = 67/158 (42.41%), Postives = 98/158 (62.03%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERL-EDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFKY------VEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAGI+F D F + +D D KKFD+VSR+ +SE+++ +++LDVN +IYPV +G+ ++I L EDG P+ E YNP RA+ +DY+M GK++K E R + Y SYGGLLM+L G++N L H F+VD+ VYL ++K
Sbjct: 30 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTPDDGE---YNPQDDRPSRADQFDYVMYGKVYKIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDSRVYLLMKK 176
BLAST of Ggra2168.t1 vs. uniprot
Match: Q568H8 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=128 Tax=Gnathostomata TaxID=7776 RepID=Q568H8_DANRE) HSP 1 Score: 114 bits (286), Expect = 9.490e-30 Identity = 66/158 (41.77%), Postives = 98/158 (62.03%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERL-EDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFKY------VEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAGI+F D F + +D D KKFD+VSR+ +SE+++ +++LDVN +IYPV +G+ ++I L EDG P+ E YNP RA+ +DY+M GK+++ E R + Y SYGGLLM+L G++N L H F+VD+ VYL ++K
Sbjct: 1 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYEDGTPDDGE---YNPQDDRPSRADQFDYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDSRVYLLMKK 147
BLAST of Ggra2168.t1 vs. uniprot
Match: E3TEV3 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=3 Tax=Clupeocephala TaxID=186625 RepID=E3TEV3_ICTPU) HSP 1 Score: 114 bits (284), Expect = 1.900e-29 Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERL-EDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFKY------VEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAGI+F D F + +D D KKFD+VSR+ +SE+++ +++LDVNT+IYPV +G+ ++I L EDG + E YNP RA+ +DY M GK++K E R + Y SYGGLLM+L G++N L H F+VD+ VYL ++K
Sbjct: 1 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDVNTQIYPVELGDKFRLVIASTLYEDGTSDDGE---YNPTDDRPSRADQFDYAMYGKVYKIEGDETSTEAATRLSAYVSYGGLLMRLQGDANNL--HGFEVDSRVYLLMKK 147
BLAST of Ggra2168.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4FCA (LOW QUALITY PROTEIN: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4FCA) HSP 1 Score: 112 bits (280), Expect = 7.430e-29 Identity = 64/157 (40.76%), Postives = 97/157 (61.78%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERL-EDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIF-----KYVEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAG++F D F + +D D KKFD+VSR+ +SE+++ +++LDVNT++YP+ + + ++I L EDG P E YNP RA+ ++Y+M GK++ KY D R Y SYGGLLM+L G++N L H F+VD+ VYL ++K
Sbjct: 1 MAGVLFEDIFDVKDIDPD------GKKFDRVSRLFCESESFKMDLILDVNTQLYPMDLADKFRMVIATTLNEDGTPADSE---YNPTDTGPSRADSFEYVMYGKVYRLEGDKYPPDSSRLAAYVSYGGLLMRLQGDANNL--HGFEVDSHVYLLMKK 146
BLAST of Ggra2168.t1 vs. uniprot
Match: A0A6P5A3K3 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5A3K3_BRABE) HSP 1 Score: 112 bits (280), Expect = 7.640e-29 Identity = 63/158 (39.87%), Postives = 97/158 (61.39%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERL-EDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFK------YVEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAG++F D F + +D D KKFD+VSR+ +SE+++ E++LDVNT++YPV +G+ +++ L EDG P+ E + P RA+ ++Y+M GKI++ + E R + Y SYGGLLM+L G++N L H +VD VYL I+K
Sbjct: 1 MAGVLFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMELILDVNTQVYPVDIGDKFRLVLASTLREDGAPDDGE---FIPTDGTPSRADQFEYVMYGKIYRIEGDDTHTESATRLSAYVSYGGLLMRLQGDANNL--HGMEVDKHVYLLIKK 147
BLAST of Ggra2168.t1 vs. uniprot
Match: DNA-directed RNA polymerases I, II, and III subunit RPABC3-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EAF92C1 (DNA-directed RNA polymerases I, II, and III subunit RPABC3-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EAF92C1) HSP 1 Score: 111 bits (278), Expect = 1.490e-28 Identity = 66/158 (41.77%), Postives = 99/158 (62.66%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIEVLITERL-EDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFKYVE------DMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAG++F D F + +D D KKFD+VSR+ +SE+++ +++LDVNT+IYPV +G+ ++I L EDG P E YNP + RA+ ++Y+M GK+++ +E D R Y SYGGLLM+L G+ N L H F+VD+ VYL ++K
Sbjct: 1 MAGVLFEDIFDVKDIDPD------GKKFDRVSRLFCESESFKMDLILDVNTQIYPVELGDKFRLVIATTLREDGYPEDGE---YNPTQQGPSRADQFEYVMFGKVYR-IEGDDGGMDSSRLAAYISYGGLLMRLKGDPNNL--HGFEVDSHVYLMMKK 146
BLAST of Ggra2168.t1 vs. uniprot
Match: A0A1B0CWD7 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=10 Tax=Diptera TaxID=7147 RepID=A0A1B0CWD7_LUTLO) HSP 1 Score: 111 bits (278), Expect = 1.530e-28 Identity = 62/158 (39.24%), Postives = 99/158 (62.66%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIE-VLITERLEDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFK------YVEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAG++F D F + MD + KKFD+VSR+ +SE+++ +++LD+N +YP+ +G+ VL T EDG P E YNP++ G RA+ ++Y+M GKI++ + E R + Y S+GGLLM+L G++N L H F+VD ++YL ++K
Sbjct: 1 MAGVLFEDIFNVKDMDPE------GKKFDRVSRLHCESESFKMDLILDINCWLYPMELGDKFRLVLATTLYEDGHPGSGE---YNPLETEGTRADSFEYVMYGKIYRIEGDEAHTEASSRLSAYVSFGGLLMRLQGDANNL--HGFEVDQNIYLLMKK 147
BLAST of Ggra2168.t1 vs. uniprot
Match: A0A649UEU5 (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=7 Tax=Decapoda TaxID=6683 RepID=A0A649UEU5_PENVA) HSP 1 Score: 110 bits (274), Expect = 6.320e-28 Identity = 67/158 (42.41%), Postives = 98/158 (62.03%), Query Frame = 0
Query: 1 MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVNTEIYPVGVGETIE-VLITERLEDGPPNPDEPRGYNPVKPLGDRANMYDYIMRGKIFKY------VEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIRK 151
MAGI+F D F + +D D KKFD+VSR+ +SE+++ +++LD+N+ IYP+ G+ VL T EDG P D P YNP++ RA+ +DY+M GKI++ VE R + Y SYGGLLM+L G++N L H F+VD +YL ++K
Sbjct: 1 MAGILFEDIFDVKDIDPD------GKKFDRVSRLHCESESFKMDLILDINSMIYPMDFGDKFRLVLATTLREDGYPT-DGP-DYNPLETGPSRADPFDYVMYGKIYRIEGDDGLVETSGRLSAYVSYGGLLMRLQGDANNL--HGFEVDKHIYLLMKK 148 The following BLAST results are available for this feature:
BLAST of Ggra2168.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Ggra2168.t1 ID=Ggra2168.t1|Name=Ggra2168.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=153bpback to top |