Ggra2168.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2168.t1
Unique NameGgra2168.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:538196..538901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7994.ENSAMXP00000001836
Preferred namePOLR2H
PFAMsRNA_pol_Rpb8
Max annot lvl33208|Metazoa
KEGG rclassRC02795
KEGG koko:K03016
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0032993,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0097159,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Evalue4.1e-31
EggNOG OGsKOG3400@1|root,KOG3400@2759|Eukaryota,3A3E0@33154|Opisthokonta,3BPWR@33208|Metazoa,3CYHY@33213|Bilateria,487S3@7711|Chordata,48UW8@7742|Vertebrata,49W9C@7898|Actinopterygii
DescriptionInfo polymerase (RNA) II (DNA directed) polypeptide H
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2168Ggra2168Gracilaria gracilis GNS1m malegenetig00000900_pilon 538196..538901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2168.t1Ggra2168.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 538196..538901 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2168.t1.start1Ggra2168.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 538196..538198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2168.t1.CDS1Ggra2168.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 538196..538286 +
Ggra2168.t1.CDS2Ggra2168.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000900_pilon 538394..538643 +
Ggra2168.t1.CDS3Ggra2168.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000900_pilon 538784..538901 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2168.t1.exon1Ggra2168.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 538196..538286 +
Ggra2168.t1.exon2Ggra2168.t1.exon2Gracilaria gracilis GNS1m maleexontig00000900_pilon 538394..538643 +
Ggra2168.t1.exon3Ggra2168.t1.exon3Gracilaria gracilis GNS1m maleexontig00000900_pilon 538784..538901 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2168.t1.intron1Ggra2168.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000900_pilon 538287..538393 +
Ggra2168.t1.intron2Ggra2168.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000900_pilon 538644..538783 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2168.t1.stop1Ggra2168.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 538899..538901 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2168.t1 ID=Ggra2168.t1|Name=Ggra2168.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=153bp
MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVN
TEIYPVGVGETIEVLITERLEDGPPNPDEPRGYNPVKPLGDRANMYDYIM
RGKIFKYVEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIR
KK*
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spliced messenger RNA

>Ggra2168.t1 ID=Ggra2168.t1|Name=Ggra2168.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=459bp|location=Sequence derived from alignment at tig00000900_pilon:538196..538901+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGAATCATCTTTTCCGATTCATTCAAGATATGGCGCATGGACTG
GGACGAAAAAACGAGATCCATCGCAAAGAAGTTCGACAAAGTGTCAAGAA
TCGAAGGCAAAAGCGAAGCTTATGAAACTGAAATGGTACTCGATGTCAAC
ACTGAAATATATCCTGTGGGTGTGGGTGAAACCATTGAGGTTCTTATCAC
AGAGCGCTTAGAGGATGGCCCACCAAACCCGGATGAACCAAGAGGTTACA
ACCCTGTAAAGCCTCTGGGAGACCGTGCAAACATGTACGACTATATCATG
CGAGGGAAGATATTCAAATATGTGGAAGATATGCAAAGAGCAAACATATA
CTTCTCTTATGGTGGGTTGCTTATGAAATTGCACGGCGAGTCGAACATTC
TGCTATCCCATATATTTCAAGTGGATGCAGACGTTTACTTATTTATAAGG
AAAAAATAG
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protein sequence of Ggra2168.t1

>Ggra2168.t1 ID=Ggra2168.t1|Name=Ggra2168.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=153bp
MAGIIFSDSFKIWRMDWDEKTRSIAKKFDKVSRIEGKSEAYETEMVLDVN
TEIYPVGVGETIEVLITERLEDGPPNPDEPRGYNPVKPLGDRANMYDYIM
RGKIFKYVEDMQRANIYFSYGGLLMKLHGESNILLSHIFQVDADVYLFIR
KK*
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mRNA from alignment at tig00000900_pilon:538196..538901+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2168.t1 ID=Ggra2168.t1|Name=Ggra2168.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=706bp|location=Sequence derived from alignment at tig00000900_pilon:538196..538901+ (Gracilaria gracilis GNS1m male)
ATGGCAGGAATCATCTTTTCCGATTCATTCAAGATATGGCGCATGGACTG
GGACGAAAAAACGAGATCCATCGCAAAGAAGTTCGACAAAGGTAATGATT
GAAGCAAAGACCTATTCAAGCCTTTAAACCTGCGACAGCCATGGACTTTC
CAACTGACTCGTTGTTTGCCATGTCTTCCAAATCTTTTTGCCAACTAGTG
TCAAGAATCGAAGGCAAAAGCGAAGCTTATGAAACTGAAATGGTACTCGA
TGTCAACACTGAAATATATCCTGTGGGTGTGGGTGAAACCATTGAGGTTC
TTATCACAGAGCGCTTAGAGGATGGCCCACCAAACCCGGATGAACCAAGA
GGTTACAACCCTGTAAAGCCTCTGGGAGACCGTGCAAACATGTACGACTA
TATCATGCGAGGGAAGATATTCAAATATGTGGAAGATATGCAAAGAGCGT
AAGTTGCAATGATATATCTCTCTAGAAACGGGTCTCAGCCCCGAGTCCTA
GCCCCCTTGCAAAACTTAACTCATGACCAGCTTGCGATAAGCTTTTGCTG
ACTCTTGCTTTACAATCGTACATTTTTGCCAATATAAGAAACATATACTT
CTCTTATGGTGGGTTGCTTATGAAATTGCACGGCGAGTCGAACATTCTGC
TATCCCATATATTTCAAGTGGATGCAGACGTTTACTTATTTATAAGGAAA
AAATAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:538196..538901+

>Ggra2168.t1 ID=Ggra2168.t1|Name=Ggra2168.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=459bp|location=Sequence derived from alignment at tig00000900_pilon:538196..538901+ (Gracilaria gracilis GNS1m male)
ATGGCAGGAATCATCTTTTCCGATTCATTCAAGATATGGCGCATGGACTG
GGACGAAAAAACGAGATCCATCGCAAAGAAGTTCGACAAAGTGTCAAGAA
TCGAAGGCAAAAGCGAAGCTTATGAAACTGAAATGGTACTCGATGTCAAC
ACTGAAATATATCCTGTGGGTGTGGGTGAAACCATTGAGGTTCTTATCAC
AGAGCGCTTAGAGGATGGCCCACCAAACCCGGATGAACCAAGAGGTTACA
ACCCTGTAAAGCCTCTGGGAGACCGTGCAAACATGTACGACTATATCATG
CGAGGGAAGATATTCAAATATGTGGAAGATATGCAAAGAGCAAACATATA
CTTCTCTTATGGTGGGTTGCTTATGAAATTGCACGGCGAGTCGAACATTC
TGCTATCCCATATATTTCAAGTGGATGCAGACGTTTACTTATTTATAAGG
AAAAAATAG
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