Ggra2166.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2166.t1
Unique NameGgra2166.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length148
Homology
BLAST of Ggra2166.t1 vs. uniprot
Match: A0A2V3J0D9 (Sec-independent protein translocase protein TatA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0D9_9FLOR)

HSP 1 Score: 99.4 bits (246), Expect = 1.810e-24
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 0
Query:   54 MGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAGGLKKASSEFRDAM 105
            MGLFGLGLPELAVIAGVGIFIFGP+KIAELGKDLGGLAGGLKKASSEFR+AM
Sbjct:    1 MGLFGLGLPELAVIAGVGIFIFGPSKIAELGKDLGGLAGGLKKASSEFREAM 52          
BLAST of Ggra2166.t1 vs. uniprot
Match: R7QCU7 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCU7_CHOCR)

HSP 1 Score: 92.8 bits (229), Expect = 2.510e-21
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 0
Query:   21 SKKGLQSGLNHVCARRTSLVSTIEVRNRRARVQMGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAG 92
            S+  LQ GL+ +C RRT+    ++ R RRA + MGLFGLG PELAVIA VG+FIFGP KIAE+GKDLGG+AG
Sbjct:   18 SRLTLQRGLDSICRRRTTFA--VQYRTRRAHISMGLFGLGFPELAVIATVGVFIFGPGKIAEMGKDLGGIAG 87          
BLAST of Ggra2166.t1 vs. uniprot
Match: A0A1X6P1X6 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1X6_PORUM)

HSP 1 Score: 82.8 bits (203), Expect = 3.480e-17
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 0
Query:   48 RRARVQMGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAGGLKKASSEFRDAM 105
            RRA VQMG+FGLG PE+AV+ GVG+ +FGP K+A+ GK  G LAG +KKA++EFRDAM
Sbjct:   44 RRASVQMGIFGLGAPEIAVVVGVGLLLFGPKKLADYGKKAGSLAGDVKKATAEFRDAM 101          
BLAST of Ggra2166.t1 vs. uniprot
Match: A0A7S2ZGP5 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZGP5_9RHOD)

HSP 1 Score: 78.6 bits (192), Expect = 9.680e-16
Identity = 42/61 (68.85%), Postives = 48/61 (78.69%), Query Frame = 0
Query:   46 RNRRARV-QMGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAGGLKKASSEFRDAM 105
            R R A V  MGLFGLG PEL VI GV   IFGPNKI+ELGK+LG +AG +KKA+SEF+DAM
Sbjct:   41 RPRMATVPSMGLFGLGFPELLVIGGVTALIFGPNKISELGKNLGSVAGSVKKATSEFQDAM 101          
BLAST of Ggra2166.t1 vs. uniprot
Match: A0A7S0BK48 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BK48_9RHOD)

HSP 1 Score: 78.2 bits (191), Expect = 1.430e-15
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 0
Query:   16 GNLSGSKKGLQSGLNHVCARRTSLVSTIEVRNRRARVQ------MGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAGGLKKASSEFRDAM 105
            G ++G  + + S ++   +R   L   +       RV+      MGLFGLG PEL VI GV   IFGPNKI+ELGK LG +AG +KKA+SEF+DAM
Sbjct:    6 GFMTGYGRVVASSVSCGSSRSVFLAGNVPALKPNPRVRPATVPCMGLFGLGFPELLVIGGVTALIFGPNKISELGKSLGSVAGSVKKATSEFQDAM 101          
BLAST of Ggra2166.t1 vs. uniprot
Match: A0A7J7IRQ4 (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IRQ4_9RHOD)

HSP 1 Score: 77.8 bits (190), Expect = 2.490e-15
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 0
Query:   47 NRRARVQMGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAGGLKKASSEFRDAM 105
            N    VQMGLFGLG PE+AVI GVG+ I+GP+++ ELG++LG LAG LK+ASSEF++ +
Sbjct:   62 NAANAVQMGLFGLGWPEIAVIVGVGLLIWGPSRVGELGRNLGSLAGNLKRASSEFKEGL 120          
BLAST of Ggra2166.t1 vs. uniprot
Match: M1VCX5 (Similar to thylakoidal sec-independent protein transporter Tha4 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VCX5_CYAM1)

HSP 1 Score: 77.4 bits (189), Expect = 3.510e-15
Identity = 36/53 (67.92%), Postives = 47/53 (88.68%), Query Frame = 0
Query:   53 QMGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAGGLKKASSEFRDAM 105
            QMGLFGLG PE+AVIAGVG+ I+GP++I ELG++LG LAG LK+ASSEF++ +
Sbjct:   68 QMGLFGLGWPEIAVIAGVGLLIWGPSRIGELGRNLGTLAGNLKRASSEFKEGL 120          
BLAST of Ggra2166.t1 vs. uniprot
Match: A0A7S0ZBV1 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZBV1_9RHOD)

HSP 1 Score: 76.6 bits (187), Expect = 5.140e-15
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 0
Query:   19 SGSKKGLQSGLNHVCARRTSLVSTIEVRNRRAR--VQMGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAGGLKKASSEFRDAM 105
            S     L+S     C  ++   + +   NR+    + MG+FGLG  EL V+AGVG+ +FGP K+AE GK LG LAG +KKA+SEF++AM
Sbjct:   14 SNPLSSLKSSSGSFCQLKSKHAAVVPNTNRKESRVITMGIFGLGWGELLVVAGVGVLLFGPKKLAESGKSLGSLAGSVKKATSEFQEAM 102          
BLAST of Ggra2166.t1 vs. uniprot
Match: A0A1X6NNZ5 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NNZ5_PORUM)

HSP 1 Score: 74.3 bits (181), Expect = 3.410e-14
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 0
Query:   54 MGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAGGLKKASSEFRDAM 105
            MG+FGLG PE+AV+ GVG+ +FGP K+A+ GK  G LAG +KKA++EFRDAM
Sbjct:    1 MGIFGLGAPEIAVVVGVGLLLFGPKKLADYGKKAGSLAGDVKKATAEFRDAM 52          
BLAST of Ggra2166.t1 vs. uniprot
Match: A0A5B8ML07 (Twin arginine-targeting-like sec-independent protein translocator protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8ML07_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 1.390e-13
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 0
Query:   46 RNRRARVQMGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAGGLKKASSEFRDAM 105
            R  R    MGLFGLGLPE+AVIAGVGI +FGP+KI ELGK LG    GL+ A+ EF++ +
Sbjct:   43 RTNREVTAMGLFGLGLPEIAVIAGVGILLFGPSKIPELGKTLGKTVRGLQDAAQEFKEEL 102          
The following BLAST results are available for this feature:
BLAST of Ggra2166.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0D91.810e-2496.15Sec-independent protein translocase protein TatA n... [more]
R7QCU72.510e-2163.89Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6P1X63.480e-1765.52Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S2ZGP59.680e-1668.85Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0BK481.430e-1546.88Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7J7IRQ42.490e-1561.02Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
M1VCX53.510e-1567.92Similar to thylakoidal sec-independent protein tra... [more]
A0A7S0ZBV15.140e-1544.94Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A1X6NNZ53.410e-1463.46Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A5B8ML071.390e-1360.00Twin arginine-targeting-like sec-independent prote... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 102..129
NoneNo IPR availableGENE3D1.20.5.3310coord: 58..117
e-value: 2.9E-11
score: 44.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..140
NoneNo IPR availablePANTHERPTHR33162SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTICcoord: 26..139
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..55
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 56..76
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 77..147
NoneNo IPR availableTMHMMTMhelixcoord: 55..77
IPR003369Sec-independent protein translocase protein TatA/B/EPFAMPF02416TatA_B_Ecoord: 59..106
e-value: 2.2E-8
score: 33.3
IPR006312Sec-independent protein translocase protein TatA/EHAMAPMF_00236TatA_Ecoord: 56..143
score: 15.133732

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:534196..534639 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2166.t1Ggra2166.t1Gracilaria gracilis GNS1m malemRNAtig00000900_pilon 534196..534639 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2166.t1 ID=Ggra2166.t1|Name=Ggra2166.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MLKLVNERVGFVPTTGNLSGSKKGLQSGLNHVCARRTSLVSTIEVRNRRA
RVQMGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAGGLKKASSE
FRDAMQESLDEADRELEQKQVDKKVASSASESPSTTTAESKQEKAEA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003369TatA/B/E
IPR006312TatA/E