Ggra2166.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2166.t1
Unique NameGgra2166.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:534196..534639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT491CT
PFAMsMttA_Hcf106
Max annot lvl2759|Eukaryota
KEGG koko:K03116
KEGG TC2.A.64
KEGG Pathwayko03060,ko03070,map03060,map03070
KEGG ModuleM00336
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006605,GO:0006612,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0031360,GO:0031361,GO:0031976,GO:0031984,GO:0033036,GO:0033365,GO:0034357,GO:0034613,GO:0042651,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043953,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045036,GO:0045038,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055035,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0072594,GO:0072596,GO:0072598,GO:0072657,GO:0090150,GO:1904680
Evalue8.54e-16
EggNOG OGsCOG1826@1|root,2S4T0@2759|Eukaryota
DescriptionmttA/Hcf106 family
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2166Ggra2166Gracilaria gracilis GNS1m malegenetig00000900_pilon 534196..534639 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2166.t1.stop1Ggra2166.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000900_pilon 534196..534198 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2166.t1.CDS1Ggra2166.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000900_pilon 534196..534639 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2166.t1.exon1Ggra2166.t1.exon1Gracilaria gracilis GNS1m maleexontig00000900_pilon 534196..534639 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2166.t1.start1Ggra2166.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000900_pilon 534637..534639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2166.t1Ggra2166.t1Gracilaria gracilis GNS1m malepolypeptidetig00000900_pilon 534196..534639 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2166.t1 ID=Ggra2166.t1|Name=Ggra2166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=148bp
MLKLVNERVGFVPTTGNLSGSKKGLQSGLNHVCARRTSLVSTIEVRNRRA
RVQMGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAGGLKKASSE
FRDAMQESLDEADRELEQKQVDKKVASSASESPSTTTAESKQEKAEA*
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spliced messenger RNA

>Ggra2166.t1 ID=Ggra2166.t1|Name=Ggra2166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000900_pilon:534196..534639- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTAAACTTGTAAACGAACGTGTGGGCTTCGTGCCTACTACAGGGAA
TTTGTCAGGTAGCAAGAAAGGTCTCCAGTCTGGATTGAACCATGTGTGTG
CGCGACGGACTAGTTTGGTGTCGACAATTGAAGTAAGAAATCGCCGTGCA
AGAGTGCAAATGGGTCTATTCGGCCTTGGCTTACCAGAACTAGCTGTGAT
TGCTGGAGTGGGAATATTTATATTTGGTCCAAACAAGATTGCGGAACTTG
GAAAGGATCTTGGAGGATTGGCTGGCGGCTTGAAGAAAGCTTCTTCAGAA
TTCAGAGACGCCATGCAGGAAAGTTTGGACGAGGCCGATCGCGAGCTTGA
ACAGAAACAGGTGGATAAGAAGGTCGCTTCTAGTGCGTCGGAGAGTCCTA
GCACTACCACTGCTGAAAGCAAACAGGAGAAAGCGGAAGCATAG
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protein sequence of Ggra2166.t1

>Ggra2166.t1 ID=Ggra2166.t1|Name=Ggra2166.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=148bp
MLKLVNERVGFVPTTGNLSGSKKGLQSGLNHVCARRTSLVSTIEVRNRRA
RVQMGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAGGLKKASSE
FRDAMQESLDEADRELEQKQVDKKVASSASESPSTTTAESKQEKAEA*
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mRNA from alignment at tig00000900_pilon:534196..534639-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2166.t1 ID=Ggra2166.t1|Name=Ggra2166.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp|location=Sequence derived from alignment at tig00000900_pilon:534196..534639- (Gracilaria gracilis GNS1m male)
ATGCTTAAACTTGTAAACGAACGTGTGGGCTTCGTGCCTACTACAGGGAA
TTTGTCAGGTAGCAAGAAAGGTCTCCAGTCTGGATTGAACCATGTGTGTG
CGCGACGGACTAGTTTGGTGTCGACAATTGAAGTAAGAAATCGCCGTGCA
AGAGTGCAAATGGGTCTATTCGGCCTTGGCTTACCAGAACTAGCTGTGAT
TGCTGGAGTGGGAATATTTATATTTGGTCCAAACAAGATTGCGGAACTTG
GAAAGGATCTTGGAGGATTGGCTGGCGGCTTGAAGAAAGCTTCTTCAGAA
TTCAGAGACGCCATGCAGGAAAGTTTGGACGAGGCCGATCGCGAGCTTGA
ACAGAAACAGGTGGATAAGAAGGTCGCTTCTAGTGCGTCGGAGAGTCCTA
GCACTACCACTGCTGAAAGCAAACAGGAGAAAGCGGAAGCATAG
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Coding sequence (CDS) from alignment at tig00000900_pilon:534196..534639-

>Ggra2166.t1 ID=Ggra2166.t1|Name=Ggra2166.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=444bp|location=Sequence derived from alignment at tig00000900_pilon:534196..534639- (Gracilaria gracilis GNS1m male)
ATGCTTAAACTTGTAAACGAACGTGTGGGCTTCGTGCCTACTACAGGGAA
TTTGTCAGGTAGCAAGAAAGGTCTCCAGTCTGGATTGAACCATGTGTGTG
CGCGACGGACTAGTTTGGTGTCGACAATTGAAGTAAGAAATCGCCGTGCA
AGAGTGCAAATGGGTCTATTCGGCCTTGGCTTACCAGAACTAGCTGTGAT
TGCTGGAGTGGGAATATTTATATTTGGTCCAAACAAGATTGCGGAACTTG
GAAAGGATCTTGGAGGATTGGCTGGCGGCTTGAAGAAAGCTTCTTCAGAA
TTCAGAGACGCCATGCAGGAAAGTTTGGACGAGGCCGATCGCGAGCTTGA
ACAGAAACAGGTGGATAAGAAGGTCGCTTCTAGTGCGTCGGAGAGTCCTA
GCACTACCACTGCTGAAAGCAAACAGGAGAAAGCGGAAGCATAG
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