Ggra2129.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra2129.t1
Unique Name	Ggra2129.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	553

Homology

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BLAST of Ggra2129.t1 vs. uniprot
Match: A0A2V3J0A0 (Senescence domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0A0_9FLOR)

HSP 1 Score: 430 bits (1105), Expect = 3.860e-142
Identity = 235/441 (53.29%), Postives = 299/441 (67.80%), Query Frame = 0

Query:   13 ADPRLYPAPTTPPSVAAPPRPPLAIPSNYQRAGRPNRPSPGPSTPSTTAPSHPPRPSSAPARPSQGEALPPGFEVLIQLEASVAERINPDATPPQHFHGVPALPPPQPSATLLVIQGPLAPDPQ--STQMLYYAFISTRAYNFPLMPSTTCRRIGPKAFRIKVDRRRFVITLAPSTNPKMVEGFIALLQWFCTWKDVEGSHTPVRMDDAASSASGGSPTSPG----NGTVFERVGEKGVQTIEKVAARVNNKTQRLLDERHMSAAQARDRGETKNLKLGGKVTVGALNATQKVFSTTAKVTGAFSDKVGATIGRGVTKTVAQPLANAPDGSKRRRFYEQLASGCLAAGRVFVSFDDHARTLINNTTDSAALLTGEKYGSEAEHACRQLGHIAVDSYRIWKFPSELGYKAVLQTGMEEELRRKGQTPSPP----PPPTYADE 443
            A P L+P  T PPS    P+PP  +PS+Y + G                 +H  RP SAPA P Q E LPPGFEVLI+L A++ E+++P+     +FHGVP LPPPQPSA LLVIQGPLA DP   +  MLYYAFI+TR+YNFPLMPST+CRRI   AFRI+VD RRFV+ L PST PK VEGFIALLQWFCTWK+ EGS  P R+ ++ +S                TVF ++G+  V  IEKV+ R NN TQR L E+H +A   R+RG  K+L +GG+ T G L  TQKV    AKV  A +DK+  T+GR VTKTVA+PLA+AP+ S RR FY+Q+ASGCLAAGR++VS D + R  + NT D+AAL+ G KYG +AEHA RQ+  IA D+Y + KFPSELGYK+++++ +EEEL+RKG   +P     PPP++A+E
Sbjct:   20 ATPSLHPNITNPPS----PKPPQPVPSSYPQPGXXXX-XXXXXXXXXXXXTH--RPHSAPAEPLQSEPLPPGFEVLIELNATITEKLHPNTPQHHNFHGVPPLPPPQPSAPLLVIQGPLATDPSQPNANMLYYAFINTRSYNFPLMPSTSCRRIAQDAFRIRVDNRRFVVALHPSTPPKHVEGFIALLQWFCTWKEPEGSLPPARLSESTTSXXXXXXXXXXXXXPKSTVFTKIGDNVVDVIEKVSNRANNTTQRYLSEKHSTAVSNRNRGAAKDLNIGGRATAGVLGTTQKVVGAVAKVAVATTDKIACTVGRRVTKTVAKPLASAPERSIRRGFYDQIASGCLAAGRIYVSVDKNVRLFMANTGDTAALVAGAKYGPQAEHASRQIAQIAYDAYHVMKFPSELGYKSLMKSSVEEELKRKGDDTTPDDQVQPPPSWANE 453

The following BLAST results are available for this feature:

BLAST of Ggra2129.t1 vs. uniprot

BLAST of Ggra2129.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J0A0	3.860e-142	53.29	Senescence domain-containing protein n=1 Tax=Graci...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009686	Senescence/spartin-associated, C-terminal	PFAM	PF06911	Senescence	coord: 245..400 e-value: 1.3E-8 score: 35.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 451..486
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 422..552
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 492..506
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..116
None	No IPR available	PANTHER	PTHR48125	LP07818P1	coord: 8..536
None	No IPR available	PANTHER	PTHR48125:SF4	LP07818P1	coord: 8..536

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:380675..382333 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2129.t1	Ggra2129.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000900_pilon 380675..382333 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra2129.t1 ID=Ggra2129.t1|Name=Ggra2129.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=553bp
MSRSASGNGASSADPRLYPAPTTPPSVAAPPRPPLAIPSNYQRAGRPNRP
SPGPSTPSTTAPSHPPRPSSAPARPSQGEALPPGFEVLIQLEASVAERIN
PDATPPQHFHGVPALPPPQPSATLLVIQGPLAPDPQSTQMLYYAFISTRA
YNFPLMPSTTCRRIGPKAFRIKVDRRRFVITLAPSTNPKMVEGFIALLQW
FCTWKDVEGSHTPVRMDDAASSASGGSPTSPGNGTVFERVGEKGVQTIEK
VAARVNNKTQRLLDERHMSAAQARDRGETKNLKLGGKVTVGALNATQKVF
STTAKVTGAFSDKVGATIGRGVTKTVAQPLANAPDGSKRRRFYEQLASGC
LAAGRVFVSFDDHARTLINNTTDSAALLTGEKYGSEAEHACRQLGHIAVD
SYRIWKFPSELGYKAVLQTGMEEELRRKGQTPSPPPPPTYADEPAHDTLV
NPLRKNSTKSESSKPHKSIPSSFASTSSSSVPSVEQVPRAPSHPYFPEPP
VDYASRAPPHPHISQPSVEHAPRAPPQPNFSDPGEPVMHIPFQDLSVSLP
KK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009686	Senescence/spartin_C