Ggra2129.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2129.t1
Unique Name	Ggra2129.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	553

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:380675..382333 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2129	Ggra2129	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 380675..382333 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2129.t1.stop1	Ggra2129.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 380675..380677 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2129.t1.CDS1	Ggra2129.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 380675..382333 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2129.t1.exon1	Ggra2129.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 380675..382333 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2129.t1.start1	Ggra2129.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 382331..382333 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2129.t1	Ggra2129.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 380675..382333 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:380675..382333-
coding sequence from alignment at tig00000900_pilon:380675..382333-

mRNA sequence

>Ggra2129.t1 ID=Ggra2129.t1|Name=Ggra2129.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=553bp
MSRSASGNGASSADPRLYPAPTTPPSVAAPPRPPLAIPSNYQRAGRPNRP
SPGPSTPSTTAPSHPPRPSSAPARPSQGEALPPGFEVLIQLEASVAERIN
PDATPPQHFHGVPALPPPQPSATLLVIQGPLAPDPQSTQMLYYAFISTRA
YNFPLMPSTTCRRIGPKAFRIKVDRRRFVITLAPSTNPKMVEGFIALLQW
FCTWKDVEGSHTPVRMDDAASSASGGSPTSPGNGTVFERVGEKGVQTIEK
VAARVNNKTQRLLDERHMSAAQARDRGETKNLKLGGKVTVGALNATQKVF
STTAKVTGAFSDKVGATIGRGVTKTVAQPLANAPDGSKRRRFYEQLASGC
LAAGRVFVSFDDHARTLINNTTDSAALLTGEKYGSEAEHACRQLGHIAVD
SYRIWKFPSELGYKAVLQTGMEEELRRKGQTPSPPPPPTYADEPAHDTLV
NPLRKNSTKSESSKPHKSIPSSFASTSSSSVPSVEQVPRAPSHPYFPEPP
VDYASRAPPHPHISQPSVEHAPRAPPQPNFSDPGEPVMHIPFQDLSVSLP
KK*

spliced messenger RNA

>Ggra2129.t1 ID=Ggra2129.t1|Name=Ggra2129.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000900_pilon:380675..382333- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGCTCAGCTTCCGGCAACGGTGCCTCTTCCGCCGACCCCCGCCT
CTATCCAGCCCCCACCACGCCTCCTTCCGTCGCCGCCCCCCCGCGACCGC
CGCTCGCTATCCCGTCCAACTACCAGCGGGCGGGTCGTCCCAATCGCCCT
TCGCCGGGGCCTTCCACCCCCAGCACTACCGCCCCGTCTCACCCACCTCG
CCCGAGCTCGGCCCCCGCACGCCCATCGCAGGGGGAAGCACTCCCGCCTG
GCTTCGAAGTGCTCATTCAGCTCGAAGCCTCCGTCGCCGAGAGGATCAAC
CCCGATGCCACGCCTCCCCAGCACTTCCACGGCGTTCCTGCCCTCCCCCC
TCCACAGCCTTCCGCCACGCTACTCGTCATCCAGGGTCCGCTGGCCCCTG
ACCCCCAATCCACCCAAATGCTGTACTACGCCTTCATCAGCACTCGCGCA
TACAATTTCCCGCTGATGCCGTCCACCACATGTCGCAGAATTGGTCCAAA
GGCCTTCCGCATCAAGGTGGATCGCCGTCGCTTCGTCATCACCCTTGCGC
CTTCTACGAATCCCAAGATGGTCGAAGGCTTTATCGCCTTGCTGCAGTGG
TTCTGTACGTGGAAGGATGTTGAAGGTTCTCATACTCCTGTGCGGATGGA
CGATGCTGCGTCCTCTGCATCTGGCGGATCCCCCACCTCGCCGGGCAACG
GGACCGTCTTCGAAAGAGTTGGCGAAAAGGGCGTTCAAACGATTGAGAAG
GTGGCCGCGCGCGTGAACAACAAGACACAGCGTTTGCTAGATGAACGCCA
CATGTCAGCCGCCCAGGCGCGTGACCGAGGTGAAACGAAAAACCTGAAGC
TTGGGGGCAAAGTCACTGTTGGCGCGCTCAATGCCACGCAAAAGGTGTTC
TCTACAACTGCCAAGGTTACAGGTGCTTTCTCTGACAAAGTTGGCGCCAC
AATTGGCCGTGGTGTGACCAAAACCGTCGCTCAACCTCTCGCAAATGCCC
CGGATGGTAGTAAGAGAAGAAGGTTTTATGAGCAACTCGCATCGGGATGC
TTGGCTGCTGGACGTGTCTTTGTGTCCTTCGACGATCATGCCAGAACGTT
GATTAACAATACTACAGATTCCGCAGCGCTTTTAACGGGTGAAAAGTATG
GATCTGAGGCTGAGCATGCCTGCCGTCAACTTGGACACATTGCAGTGGAC
AGTTATCGCATTTGGAAGTTCCCGTCAGAATTGGGGTACAAGGCAGTGTT
GCAAACAGGTATGGAGGAAGAGTTAAGGAGGAAAGGCCAAACTCCATCCC
CACCGCCCCCGCCAACGTACGCTGATGAGCCGGCTCATGACACGCTGGTC
AACCCTTTACGAAAGAACTCCACCAAGTCAGAATCTTCCAAGCCACATAA
GTCAATCCCATCGTCATTTGCCTCGACATCCTCCTCATCAGTACCTTCCG
TTGAGCAAGTACCCAGAGCTCCATCACACCCTTATTTTCCTGAGCCTCCC
GTCGATTATGCGTCCAGAGCTCCACCACATCCGCATATTTCTCAACCTTC
CGTTGAACACGCCCCCAGGGCTCCACCACAGCCAAATTTTTCTGACCCTG
GGGAACCTGTGATGCATATACCATTCCAAGACTTGAGTGTCAGTCTTCCG
AAGAAGTAA

protein sequence of Ggra2129.t1

>Ggra2129.t1 ID=Ggra2129.t1|Name=Ggra2129.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=553bp
MSRSASGNGASSADPRLYPAPTTPPSVAAPPRPPLAIPSNYQRAGRPNRP
SPGPSTPSTTAPSHPPRPSSAPARPSQGEALPPGFEVLIQLEASVAERIN
PDATPPQHFHGVPALPPPQPSATLLVIQGPLAPDPQSTQMLYYAFISTRA
YNFPLMPSTTCRRIGPKAFRIKVDRRRFVITLAPSTNPKMVEGFIALLQW
FCTWKDVEGSHTPVRMDDAASSASGGSPTSPGNGTVFERVGEKGVQTIEK
VAARVNNKTQRLLDERHMSAAQARDRGETKNLKLGGKVTVGALNATQKVF
STTAKVTGAFSDKVGATIGRGVTKTVAQPLANAPDGSKRRRFYEQLASGC
LAAGRVFVSFDDHARTLINNTTDSAALLTGEKYGSEAEHACRQLGHIAVD
SYRIWKFPSELGYKAVLQTGMEEELRRKGQTPSPPPPPTYADEPAHDTLV
NPLRKNSTKSESSKPHKSIPSSFASTSSSSVPSVEQVPRAPSHPYFPEPP
VDYASRAPPHPHISQPSVEHAPRAPPQPNFSDPGEPVMHIPFQDLSVSLP
KK*

mRNA from alignment at tig00000900_pilon:380675..382333-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2129.t1 ID=Ggra2129.t1|Name=Ggra2129.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1659bp|location=Sequence derived from alignment at tig00000900_pilon:380675..382333- (Gracilaria gracilis GNS1m male)
ATGAGTCGCTCAGCTTCCGGCAACGGTGCCTCTTCCGCCGACCCCCGCCT
CTATCCAGCCCCCACCACGCCTCCTTCCGTCGCCGCCCCCCCGCGACCGC
CGCTCGCTATCCCGTCCAACTACCAGCGGGCGGGTCGTCCCAATCGCCCT
TCGCCGGGGCCTTCCACCCCCAGCACTACCGCCCCGTCTCACCCACCTCG
CCCGAGCTCGGCCCCCGCACGCCCATCGCAGGGGGAAGCACTCCCGCCTG
GCTTCGAAGTGCTCATTCAGCTCGAAGCCTCCGTCGCCGAGAGGATCAAC
CCCGATGCCACGCCTCCCCAGCACTTCCACGGCGTTCCTGCCCTCCCCCC
TCCACAGCCTTCCGCCACGCTACTCGTCATCCAGGGTCCGCTGGCCCCTG
ACCCCCAATCCACCCAAATGCTGTACTACGCCTTCATCAGCACTCGCGCA
TACAATTTCCCGCTGATGCCGTCCACCACATGTCGCAGAATTGGTCCAAA
GGCCTTCCGCATCAAGGTGGATCGCCGTCGCTTCGTCATCACCCTTGCGC
CTTCTACGAATCCCAAGATGGTCGAAGGCTTTATCGCCTTGCTGCAGTGG
TTCTGTACGTGGAAGGATGTTGAAGGTTCTCATACTCCTGTGCGGATGGA
CGATGCTGCGTCCTCTGCATCTGGCGGATCCCCCACCTCGCCGGGCAACG
GGACCGTCTTCGAAAGAGTTGGCGAAAAGGGCGTTCAAACGATTGAGAAG
GTGGCCGCGCGCGTGAACAACAAGACACAGCGTTTGCTAGATGAACGCCA
CATGTCAGCCGCCCAGGCGCGTGACCGAGGTGAAACGAAAAACCTGAAGC
TTGGGGGCAAAGTCACTGTTGGCGCGCTCAATGCCACGCAAAAGGTGTTC
TCTACAACTGCCAAGGTTACAGGTGCTTTCTCTGACAAAGTTGGCGCCAC
AATTGGCCGTGGTGTGACCAAAACCGTCGCTCAACCTCTCGCAAATGCCC
CGGATGGTAGTAAGAGAAGAAGGTTTTATGAGCAACTCGCATCGGGATGC
TTGGCTGCTGGACGTGTCTTTGTGTCCTTCGACGATCATGCCAGAACGTT
GATTAACAATACTACAGATTCCGCAGCGCTTTTAACGGGTGAAAAGTATG
GATCTGAGGCTGAGCATGCCTGCCGTCAACTTGGACACATTGCAGTGGAC
AGTTATCGCATTTGGAAGTTCCCGTCAGAATTGGGGTACAAGGCAGTGTT
GCAAACAGGTATGGAGGAAGAGTTAAGGAGGAAAGGCCAAACTCCATCCC
CACCGCCCCCGCCAACGTACGCTGATGAGCCGGCTCATGACACGCTGGTC
AACCCTTTACGAAAGAACTCCACCAAGTCAGAATCTTCCAAGCCACATAA
GTCAATCCCATCGTCATTTGCCTCGACATCCTCCTCATCAGTACCTTCCG
TTGAGCAAGTACCCAGAGCTCCATCACACCCTTATTTTCCTGAGCCTCCC
GTCGATTATGCGTCCAGAGCTCCACCACATCCGCATATTTCTCAACCTTC
CGTTGAACACGCCCCCAGGGCTCCACCACAGCCAAATTTTTCTGACCCTG
GGGAACCTGTGATGCATATACCATTCCAAGACTTGAGTGTCAGTCTTCCG
AAGAAGTAA

Coding sequence (CDS) from alignment at tig00000900_pilon:380675..382333-

>Ggra2129.t1 ID=Ggra2129.t1|Name=Ggra2129.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1659bp|location=Sequence derived from alignment at tig00000900_pilon:380675..382333- (Gracilaria gracilis GNS1m male)
ATGAGTCGCTCAGCTTCCGGCAACGGTGCCTCTTCCGCCGACCCCCGCCT
CTATCCAGCCCCCACCACGCCTCCTTCCGTCGCCGCCCCCCCGCGACCGC
CGCTCGCTATCCCGTCCAACTACCAGCGGGCGGGTCGTCCCAATCGCCCT
TCGCCGGGGCCTTCCACCCCCAGCACTACCGCCCCGTCTCACCCACCTCG
CCCGAGCTCGGCCCCCGCACGCCCATCGCAGGGGGAAGCACTCCCGCCTG
GCTTCGAAGTGCTCATTCAGCTCGAAGCCTCCGTCGCCGAGAGGATCAAC
CCCGATGCCACGCCTCCCCAGCACTTCCACGGCGTTCCTGCCCTCCCCCC
TCCACAGCCTTCCGCCACGCTACTCGTCATCCAGGGTCCGCTGGCCCCTG
ACCCCCAATCCACCCAAATGCTGTACTACGCCTTCATCAGCACTCGCGCA
TACAATTTCCCGCTGATGCCGTCCACCACATGTCGCAGAATTGGTCCAAA
GGCCTTCCGCATCAAGGTGGATCGCCGTCGCTTCGTCATCACCCTTGCGC
CTTCTACGAATCCCAAGATGGTCGAAGGCTTTATCGCCTTGCTGCAGTGG
TTCTGTACGTGGAAGGATGTTGAAGGTTCTCATACTCCTGTGCGGATGGA
CGATGCTGCGTCCTCTGCATCTGGCGGATCCCCCACCTCGCCGGGCAACG
GGACCGTCTTCGAAAGAGTTGGCGAAAAGGGCGTTCAAACGATTGAGAAG
GTGGCCGCGCGCGTGAACAACAAGACACAGCGTTTGCTAGATGAACGCCA
CATGTCAGCCGCCCAGGCGCGTGACCGAGGTGAAACGAAAAACCTGAAGC
TTGGGGGCAAAGTCACTGTTGGCGCGCTCAATGCCACGCAAAAGGTGTTC
TCTACAACTGCCAAGGTTACAGGTGCTTTCTCTGACAAAGTTGGCGCCAC
AATTGGCCGTGGTGTGACCAAAACCGTCGCTCAACCTCTCGCAAATGCCC
CGGATGGTAGTAAGAGAAGAAGGTTTTATGAGCAACTCGCATCGGGATGC
TTGGCTGCTGGACGTGTCTTTGTGTCCTTCGACGATCATGCCAGAACGTT
GATTAACAATACTACAGATTCCGCAGCGCTTTTAACGGGTGAAAAGTATG
GATCTGAGGCTGAGCATGCCTGCCGTCAACTTGGACACATTGCAGTGGAC
AGTTATCGCATTTGGAAGTTCCCGTCAGAATTGGGGTACAAGGCAGTGTT
GCAAACAGGTATGGAGGAAGAGTTAAGGAGGAAAGGCCAAACTCCATCCC
CACCGCCCCCGCCAACGTACGCTGATGAGCCGGCTCATGACACGCTGGTC
AACCCTTTACGAAAGAACTCCACCAAGTCAGAATCTTCCAAGCCACATAA
GTCAATCCCATCGTCATTTGCCTCGACATCCTCCTCATCAGTACCTTCCG
TTGAGCAAGTACCCAGAGCTCCATCACACCCTTATTTTCCTGAGCCTCCC
GTCGATTATGCGTCCAGAGCTCCACCACATCCGCATATTTCTCAACCTTC
CGTTGAACACGCCCCCAGGGCTCCACCACAGCCAAATTTTTCTGACCCTG
GGGAACCTGTGATGCATATACCATTCCAAGACTTGAGTGTCAGTCTTCCG
AAGAAGTAA