Ggra2113.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2113.t1
Unique NameGgra2113.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length608
Homology
BLAST of Ggra2113.t1 vs. uniprot
Match: A0A2V3J194 (RNase III domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J194_9FLOR)

HSP 1 Score: 665 bits (1716), Expect = 1.260e-232
Identity = 351/609 (57.64%), Postives = 429/609 (70.44%), Query Frame = 0
Query:    1 MRSALGIRRIADVHVSQVIKATDADILHLRSVLHGWRVPHFSSWPLLLRALTHPSISNWAERTLNLRKRSLAPNTLELLGDRVVGTAVALHCLSCQPSAERPDAPPSVAHV-RPSVWVRAMVGNRGMAIVARNIGIHSLLRWEKPLPPEAHRHRMDHSGVDYATGLTCNTDINALANAYEAVAAAIYLDSGMPAAHAFVRHSLLHDVRMVQNANMEVPHFQHKLASELTALLKQPISFVASRKRTARSLMQHINCFEPLQCEILDLQRSRAERREHDLFYCAVAVRKRDELPQPFHERDFVCVASHFSVETARIAALEQAIDII--NAVRTPHTPEHLTDIKPLQLQMRASALGEQVPEMEVHFSSDGRWQYDADYHHMASLLERVGAPGVTAAWHQLDAQQIQQKIQTLRRDASEKDDGWDAHDGRYDA-FLGVRKSVERSDGRPQGEPAMCPSAVSKCMSIGTDIALNSQLARRHKAPFHAIEDAQRVVQLVTESVDELATLSVQQRSARVKAYHVLGSNAAKLWSVQSSMQDASQERLQVVAESERRGGMSHVMQRALLGDNGLVDVDDLRVNGAYVALGMCVDSVGCSSAMAWLSGAEQIATDGR 605
            MRSALGIRRIADV V QV+ ATDADIL L+ V+  W+VP F +WPLLLRALTHPSISNWAER L ++KRSL+P+TLELLGDRVVGTAVAL  L  Q   +       +AH  R S  +R +VGNRGMA+VAR IGI  LLRWEKPLPP AHR R+D +GVD ATG +CNT++NA ANAYEAVAAA+YLD  +PAA  FV ++LL  V  VQNAN E+PHF+ +L   + AL+KQ ++F+ S KR A      +N FEPL+C +LDL    AE R H+LFYCAVA+R + +    F E DF+ VASHFSVETARIAAL QAI ++  N      +  H T  +P+ L+ R  AL E    +E +F+ DGRWQY ADYHH+A LL+RV  PG T     LDA QIQ++IQ L R A   D  W     ++   F     +   + GRP+GEP +CP+ + +C+S+G    L S+LAR H+APF  IE A RVV+ +T S DEL +L+V +RSAR KAYHVLG NA +LWSVQSSMQD S+ER+ VV+ SE + GMS VMQ ALLGD GL DV+DLRVN AYVA+GMCV S GC SAMAWLSGAEQIA D +
Sbjct:    1 MRSALGIRRIADVEVRQVLHATDADILQLQRVMTQWQVPQFRAWPLLLRALTHPSISNWAERMLKVKKRSLSPSTLELLGDRVVGTAVALQLLRWQTCPDEDHPHSRLAHAPRLSTVLRGLVGNRGMALVARQIGIDRLLRWEKPLPPLAHRGRLDQTGVDLATGFSCNTEVNAFANAYEAVAAAVYLDCALPAATDFVANTLLRRVEHVQNANAEIPHFEERLVHHVCALVKQQVAFITSPKRRA------VNTFEPLECHVLDLHPQLAENRAHELFYCAVALRNKQDSQNHFAESDFITVASHFSVETARIAALTQAIGMLSGNTAAAQSSQRHST--RPVPLRFRNDALDEPQHFLEANFTDDGRWQYHADYHHLAKLLQRVHTPGTTGL-ETLDASQIQERIQALGRSAEHDDQRWSEQGHKHHTLFQSWHSTAPHARGRPKGEPPVCPATIERCVSVGQQTQLGSELARNHEAPFLGIESASRVVEAITNSADELYSLTVPKRSARAKAYHVLGHNAVRLWSVQSSMQDCSEERVSVVSRSEEKAGMSRVMQSALLGDRGLADVEDLRVNRAYVAIGMCVHSAGCPSAMAWLSGAEQIAADSK 600          
BLAST of Ggra2113.t1 vs. uniprot
Match: A0A6L4YQ52 (Ribonuclease 3 n=1 Tax=bacterium TaxID=1869227 RepID=A0A6L4YQ52_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 4.770e-6
Identity = 61/212 (28.77%), Postives = 94/212 (44.34%), Query Frame = 0
Query:   19 IKATDADILHLRSVLHGWRVPHFSSWPLLLRALTHPSISNWAERTLNLRKRSLAPNTLELLGDRVVGTAVALHCLSCQPSAERPDAPPSVAHVRPSVWVRAMVGNRGMAIVARNIGIHSLLRWEKPLPPEAHRHRMDHSGVDYATGLTCNTDINALANAYEAVAAAIYLDSGMPAAHAFVRHSLLHDVRMVQNANMEVPHFQHKLASELTAL 230
            ++AT+   L  R + + + VP+     LL RA+TH S +N      N+R        LE LGD V+G  V+L      P  +        A+         +V  R +A  A  +G+   LR  +              G +   G +  T    LA+AYEA+ AAI+LD G+  A+ FVR  L HD++ +  A++    ++  L   L AL
Sbjct:   21 LRATNLADLEKR-ISYQFEVPN-----LLERAVTHRSYANEYPED-NIRHNE----ALEFLGDSVLGFIVSLWIFELFPGVDEGKLSKIKAY---------LVSARTLARRAEALGLGQFLRLNR--------------GEEKTGGRSKKT---LLADAYEAIIAAIFLDGGLVVANGFVRRELFHDLKKLNIADLSTTDYKSALQEYLQAL 195          
The following BLAST results are available for this feature:
BLAST of Ggra2113.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J1941.260e-23257.64RNase III domain-containing protein n=1 Tax=Gracil... [more]
A0A6L4YQ524.770e-628.77Ribonuclease 3 n=1 Tax=bacterium TaxID=1869227 Rep... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000999Ribonuclease III domainSMARTSM00535riboneu5coord: 45..211
e-value: 2.6E-8
score: 43.6
IPR000999Ribonuclease III domainPFAMPF14622Ribonucleas_3_3coord: 46..205
e-value: 4.2E-9
score: 36.7
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 41..190
score: 9.320645
IPR000999Ribonuclease III domainCDDcd00593RIBOccoord: 46..207
e-value: 3.64166E-14
score: 67.6379
IPR036389Ribonuclease III, endonuclease domain superfamilyGENE3D1.10.1520.10Ribonuclease III domaincoord: 24..225
e-value: 1.3E-20
score: 75.7
IPR036389Ribonuclease III, endonuclease domain superfamilySUPERFAMILY69065RNase III domain-likecoord: 38..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000900_piloncontigtig00000900_pilon:321557..323380 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2113.t1Ggra2113.t1Gracilaria gracilis GNS1m malemRNAtig00000900_pilon 321557..323380 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2113.t1 ID=Ggra2113.t1|Name=Ggra2113.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=608bp
MRSALGIRRIADVHVSQVIKATDADILHLRSVLHGWRVPHFSSWPLLLRA
LTHPSISNWAERTLNLRKRSLAPNTLELLGDRVVGTAVALHCLSCQPSAE
RPDAPPSVAHVRPSVWVRAMVGNRGMAIVARNIGIHSLLRWEKPLPPEAH
RHRMDHSGVDYATGLTCNTDINALANAYEAVAAAIYLDSGMPAAHAFVRH
SLLHDVRMVQNANMEVPHFQHKLASELTALLKQPISFVASRKRTARSLMQ
HINCFEPLQCEILDLQRSRAERREHDLFYCAVAVRKRDELPQPFHERDFV
CVASHFSVETARIAALEQAIDIINAVRTPHTPEHLTDIKPLQLQMRASAL
GEQVPEMEVHFSSDGRWQYDADYHHMASLLERVGAPGVTAAWHQLDAQQI
QQKIQTLRRDASEKDDGWDAHDGRYDAFLGVRKSVERSDGRPQGEPAMCP
SAVSKCMSIGTDIALNSQLARRHKAPFHAIEDAQRVVQLVTESVDELATL
SVQQRSARVKAYHVLGSNAAKLWSVQSSMQDASQERLQVVAESERRGGMS
HVMQRALLGDNGLVDVDDLRVNGAYVALGMCVDSVGCSSAMAWLSGAEQI
ATDGRER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000999RNase_III_dom
IPR036389RNase_III_sf