Ggra2113.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra2113.t1
Unique Name	Ggra2113.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	608

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000900_pilon	contig	tig00000900_pilon:321557..323380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1296990.H845_519
Preferred name	rnc
PFAMs	Ribonucleas_3_3,dsrm
Max annot lvl	204441\|Rhodospirillales
KEGG ko	ko:K03685
KEGG Pathway	ko03008,ko05205,map03008,map05205
Evalue	0.000199
EggNOG OGs	COG0571@1\|root,COG0571@2\|Bacteria,1MUQ6@1224\|Proteobacteria,2TTIA@28211\|Alphaproteobacteria,2JRS9@204441\|Rhodospirillales
EC	3.1.26.3
Description	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
COG category	J
BRITE	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra2113	Ggra2113	Gracilaria gracilis GNS1m male	gene	tig00000900_pilon 321557..323380 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2113.t1.start1	Ggra2113.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000900_pilon 321557..321559 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2113.t1.CDS1	Ggra2113.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000900_pilon 321557..323380 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2113.t1.exon1	Ggra2113.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000900_pilon 321557..323380 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2113.t1.stop1	Ggra2113.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000900_pilon 323378..323380 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra2113.t1	Ggra2113.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000900_pilon 321557..323380 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000900_pilon:321557..323380+
coding sequence from alignment at tig00000900_pilon:321557..323380+

mRNA sequence

>Ggra2113.t1 ID=Ggra2113.t1|Name=Ggra2113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=608bp
MRSALGIRRIADVHVSQVIKATDADILHLRSVLHGWRVPHFSSWPLLLRA
LTHPSISNWAERTLNLRKRSLAPNTLELLGDRVVGTAVALHCLSCQPSAE
RPDAPPSVAHVRPSVWVRAMVGNRGMAIVARNIGIHSLLRWEKPLPPEAH
RHRMDHSGVDYATGLTCNTDINALANAYEAVAAAIYLDSGMPAAHAFVRH
SLLHDVRMVQNANMEVPHFQHKLASELTALLKQPISFVASRKRTARSLMQ
HINCFEPLQCEILDLQRSRAERREHDLFYCAVAVRKRDELPQPFHERDFV
CVASHFSVETARIAALEQAIDIINAVRTPHTPEHLTDIKPLQLQMRASAL
GEQVPEMEVHFSSDGRWQYDADYHHMASLLERVGAPGVTAAWHQLDAQQI
QQKIQTLRRDASEKDDGWDAHDGRYDAFLGVRKSVERSDGRPQGEPAMCP
SAVSKCMSIGTDIALNSQLARRHKAPFHAIEDAQRVVQLVTESVDELATL
SVQQRSARVKAYHVLGSNAAKLWSVQSSMQDASQERLQVVAESERRGGMS
HVMQRALLGDNGLVDVDDLRVNGAYVALGMCVDSVGCSSAMAWLSGAEQI
ATDGRER*

spliced messenger RNA

>Ggra2113.t1 ID=Ggra2113.t1|Name=Ggra2113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1824bp|location=Sequence derived from alignment at tig00000900_pilon:321557..323380+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGTCCGCGCTCGGCATTCGGCGCATTGCCGACGTGCACGTCAGTCA
GGTGATCAAAGCCACGGACGCTGACATTCTTCACCTGCGCTCCGTTCTTC
ACGGCTGGCGCGTGCCGCACTTCAGCAGCTGGCCGCTGTTGCTGCGCGCG
CTCACGCACCCCAGCATTTCCAACTGGGCCGAGCGCACGCTCAACCTGCG
CAAGCGCTCGCTGGCCCCCAACACGCTGGAGCTGCTGGGCGATCGCGTTG
TGGGCACCGCCGTCGCTCTGCACTGCCTCTCCTGCCAGCCGTCTGCTGAG
CGCCCCGATGCGCCGCCGTCCGTCGCGCACGTCAGGCCCTCTGTCTGGGT
GCGCGCCATGGTGGGAAACCGCGGAATGGCCATTGTTGCACGAAACATTG
GCATACACTCGCTGTTGAGATGGGAAAAGCCACTGCCCCCGGAAGCTCAC
CGCCATCGCATGGATCACAGCGGCGTCGATTACGCCACCGGCCTCACGTG
CAACACCGACATTAACGCCTTGGCAAACGCATACGAAGCAGTAGCCGCCG
CCATATATCTCGACTCCGGCATGCCCGCCGCCCATGCCTTTGTGCGCCAC
TCGCTGCTGCACGACGTTCGCATGGTGCAAAACGCCAACATGGAGGTGCC
CCACTTCCAGCACAAGCTGGCCAGCGAGCTCACTGCGCTGCTCAAGCAGC
CCATATCGTTCGTGGCCTCGCGCAAGCGCACCGCGCGCTCGCTCATGCAG
CACATCAACTGCTTCGAACCGCTGCAGTGCGAGATTCTAGACCTGCAGCG
CAGCCGCGCCGAGCGCCGCGAACACGACCTGTTTTACTGCGCCGTGGCCG
TTCGGAAGCGAGATGAGCTGCCTCAACCTTTTCATGAGCGCGACTTTGTT
TGCGTCGCGTCGCACTTTTCGGTCGAGACTGCGCGCATCGCTGCGTTGGA
GCAGGCCATTGACATAATCAACGCCGTCAGAACGCCGCACACTCCCGAGC
ACCTGACGGATATCAAACCGCTGCAGCTGCAGATGCGTGCGAGTGCGTTG
GGCGAGCAGGTGCCAGAGATGGAGGTGCACTTCTCGAGCGACGGACGTTG
GCAGTATGATGCAGATTACCATCACATGGCCAGCCTTCTTGAGCGTGTAG
GCGCGCCCGGTGTCACTGCCGCATGGCACCAGCTAGACGCGCAGCAGATT
CAACAAAAAATCCAAACGCTGCGACGAGACGCAAGCGAAAAAGACGACGG
CTGGGACGCGCATGATGGCCGATATGATGCCTTTCTTGGTGTTCGTAAAA
GCGTCGAGCGCAGCGATGGTAGACCTCAAGGTGAACCCGCCATGTGTCCG
TCCGCTGTGTCAAAGTGCATGTCTATAGGAACTGATATTGCGCTCAACAG
CCAACTGGCTCGTCGTCACAAAGCGCCGTTCCATGCCATTGAGGATGCGC
AACGGGTTGTGCAACTGGTTACGGAGTCGGTGGATGAACTTGCTACACTT
TCAGTGCAGCAGCGAAGCGCCAGGGTGAAGGCATATCATGTGCTGGGTAG
TAACGCCGCCAAGCTGTGGAGTGTGCAGAGCAGCATGCAAGACGCCAGTC
AGGAACGGTTGCAAGTTGTGGCTGAGAGTGAGCGCAGAGGAGGCATGTCA
CACGTTATGCAGCGCGCTTTGCTTGGTGACAACGGACTGGTGGATGTCGA
TGACTTGAGAGTGAATGGCGCCTATGTGGCCCTTGGAATGTGTGTCGATT
CTGTTGGCTGCTCGTCCGCCATGGCGTGGTTGTCCGGTGCCGAACAAATT
GCTACCGACGGCCGTGAGCGATAG

protein sequence of Ggra2113.t1

>Ggra2113.t1 ID=Ggra2113.t1|Name=Ggra2113.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=608bp
MRSALGIRRIADVHVSQVIKATDADILHLRSVLHGWRVPHFSSWPLLLRA
LTHPSISNWAERTLNLRKRSLAPNTLELLGDRVVGTAVALHCLSCQPSAE
RPDAPPSVAHVRPSVWVRAMVGNRGMAIVARNIGIHSLLRWEKPLPPEAH
RHRMDHSGVDYATGLTCNTDINALANAYEAVAAAIYLDSGMPAAHAFVRH
SLLHDVRMVQNANMEVPHFQHKLASELTALLKQPISFVASRKRTARSLMQ
HINCFEPLQCEILDLQRSRAERREHDLFYCAVAVRKRDELPQPFHERDFV
CVASHFSVETARIAALEQAIDIINAVRTPHTPEHLTDIKPLQLQMRASAL
GEQVPEMEVHFSSDGRWQYDADYHHMASLLERVGAPGVTAAWHQLDAQQI
QQKIQTLRRDASEKDDGWDAHDGRYDAFLGVRKSVERSDGRPQGEPAMCP
SAVSKCMSIGTDIALNSQLARRHKAPFHAIEDAQRVVQLVTESVDELATL
SVQQRSARVKAYHVLGSNAAKLWSVQSSMQDASQERLQVVAESERRGGMS
HVMQRALLGDNGLVDVDDLRVNGAYVALGMCVDSVGCSSAMAWLSGAEQI
ATDGRER*

mRNA from alignment at tig00000900_pilon:321557..323380+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra2113.t1 ID=Ggra2113.t1|Name=Ggra2113.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1824bp|location=Sequence derived from alignment at tig00000900_pilon:321557..323380+ (Gracilaria gracilis GNS1m male)
ATGCGGTCCGCGCTCGGCATTCGGCGCATTGCCGACGTGCACGTCAGTCA
GGTGATCAAAGCCACGGACGCTGACATTCTTCACCTGCGCTCCGTTCTTC
ACGGCTGGCGCGTGCCGCACTTCAGCAGCTGGCCGCTGTTGCTGCGCGCG
CTCACGCACCCCAGCATTTCCAACTGGGCCGAGCGCACGCTCAACCTGCG
CAAGCGCTCGCTGGCCCCCAACACGCTGGAGCTGCTGGGCGATCGCGTTG
TGGGCACCGCCGTCGCTCTGCACTGCCTCTCCTGCCAGCCGTCTGCTGAG
CGCCCCGATGCGCCGCCGTCCGTCGCGCACGTCAGGCCCTCTGTCTGGGT
GCGCGCCATGGTGGGAAACCGCGGAATGGCCATTGTTGCACGAAACATTG
GCATACACTCGCTGTTGAGATGGGAAAAGCCACTGCCCCCGGAAGCTCAC
CGCCATCGCATGGATCACAGCGGCGTCGATTACGCCACCGGCCTCACGTG
CAACACCGACATTAACGCCTTGGCAAACGCATACGAAGCAGTAGCCGCCG
CCATATATCTCGACTCCGGCATGCCCGCCGCCCATGCCTTTGTGCGCCAC
TCGCTGCTGCACGACGTTCGCATGGTGCAAAACGCCAACATGGAGGTGCC
CCACTTCCAGCACAAGCTGGCCAGCGAGCTCACTGCGCTGCTCAAGCAGC
CCATATCGTTCGTGGCCTCGCGCAAGCGCACCGCGCGCTCGCTCATGCAG
CACATCAACTGCTTCGAACCGCTGCAGTGCGAGATTCTAGACCTGCAGCG
CAGCCGCGCCGAGCGCCGCGAACACGACCTGTTTTACTGCGCCGTGGCCG
TTCGGAAGCGAGATGAGCTGCCTCAACCTTTTCATGAGCGCGACTTTGTT
TGCGTCGCGTCGCACTTTTCGGTCGAGACTGCGCGCATCGCTGCGTTGGA
GCAGGCCATTGACATAATCAACGCCGTCAGAACGCCGCACACTCCCGAGC
ACCTGACGGATATCAAACCGCTGCAGCTGCAGATGCGTGCGAGTGCGTTG
GGCGAGCAGGTGCCAGAGATGGAGGTGCACTTCTCGAGCGACGGACGTTG
GCAGTATGATGCAGATTACCATCACATGGCCAGCCTTCTTGAGCGTGTAG
GCGCGCCCGGTGTCACTGCCGCATGGCACCAGCTAGACGCGCAGCAGATT
CAACAAAAAATCCAAACGCTGCGACGAGACGCAAGCGAAAAAGACGACGG
CTGGGACGCGCATGATGGCCGATATGATGCCTTTCTTGGTGTTCGTAAAA
GCGTCGAGCGCAGCGATGGTAGACCTCAAGGTGAACCCGCCATGTGTCCG
TCCGCTGTGTCAAAGTGCATGTCTATAGGAACTGATATTGCGCTCAACAG
CCAACTGGCTCGTCGTCACAAAGCGCCGTTCCATGCCATTGAGGATGCGC
AACGGGTTGTGCAACTGGTTACGGAGTCGGTGGATGAACTTGCTACACTT
TCAGTGCAGCAGCGAAGCGCCAGGGTGAAGGCATATCATGTGCTGGGTAG
TAACGCCGCCAAGCTGTGGAGTGTGCAGAGCAGCATGCAAGACGCCAGTC
AGGAACGGTTGCAAGTTGTGGCTGAGAGTGAGCGCAGAGGAGGCATGTCA
CACGTTATGCAGCGCGCTTTGCTTGGTGACAACGGACTGGTGGATGTCGA
TGACTTGAGAGTGAATGGCGCCTATGTGGCCCTTGGAATGTGTGTCGATT
CTGTTGGCTGCTCGTCCGCCATGGCGTGGTTGTCCGGTGCCGAACAAATT
GCTACCGACGGCCGTGAGCGATAG

Coding sequence (CDS) from alignment at tig00000900_pilon:321557..323380+

>Ggra2113.t1 ID=Ggra2113.t1|Name=Ggra2113.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1824bp|location=Sequence derived from alignment at tig00000900_pilon:321557..323380+ (Gracilaria gracilis GNS1m male)
ATGCGGTCCGCGCTCGGCATTCGGCGCATTGCCGACGTGCACGTCAGTCA
GGTGATCAAAGCCACGGACGCTGACATTCTTCACCTGCGCTCCGTTCTTC
ACGGCTGGCGCGTGCCGCACTTCAGCAGCTGGCCGCTGTTGCTGCGCGCG
CTCACGCACCCCAGCATTTCCAACTGGGCCGAGCGCACGCTCAACCTGCG
CAAGCGCTCGCTGGCCCCCAACACGCTGGAGCTGCTGGGCGATCGCGTTG
TGGGCACCGCCGTCGCTCTGCACTGCCTCTCCTGCCAGCCGTCTGCTGAG
CGCCCCGATGCGCCGCCGTCCGTCGCGCACGTCAGGCCCTCTGTCTGGGT
GCGCGCCATGGTGGGAAACCGCGGAATGGCCATTGTTGCACGAAACATTG
GCATACACTCGCTGTTGAGATGGGAAAAGCCACTGCCCCCGGAAGCTCAC
CGCCATCGCATGGATCACAGCGGCGTCGATTACGCCACCGGCCTCACGTG
CAACACCGACATTAACGCCTTGGCAAACGCATACGAAGCAGTAGCCGCCG
CCATATATCTCGACTCCGGCATGCCCGCCGCCCATGCCTTTGTGCGCCAC
TCGCTGCTGCACGACGTTCGCATGGTGCAAAACGCCAACATGGAGGTGCC
CCACTTCCAGCACAAGCTGGCCAGCGAGCTCACTGCGCTGCTCAAGCAGC
CCATATCGTTCGTGGCCTCGCGCAAGCGCACCGCGCGCTCGCTCATGCAG
CACATCAACTGCTTCGAACCGCTGCAGTGCGAGATTCTAGACCTGCAGCG
CAGCCGCGCCGAGCGCCGCGAACACGACCTGTTTTACTGCGCCGTGGCCG
TTCGGAAGCGAGATGAGCTGCCTCAACCTTTTCATGAGCGCGACTTTGTT
TGCGTCGCGTCGCACTTTTCGGTCGAGACTGCGCGCATCGCTGCGTTGGA
GCAGGCCATTGACATAATCAACGCCGTCAGAACGCCGCACACTCCCGAGC
ACCTGACGGATATCAAACCGCTGCAGCTGCAGATGCGTGCGAGTGCGTTG
GGCGAGCAGGTGCCAGAGATGGAGGTGCACTTCTCGAGCGACGGACGTTG
GCAGTATGATGCAGATTACCATCACATGGCCAGCCTTCTTGAGCGTGTAG
GCGCGCCCGGTGTCACTGCCGCATGGCACCAGCTAGACGCGCAGCAGATT
CAACAAAAAATCCAAACGCTGCGACGAGACGCAAGCGAAAAAGACGACGG
CTGGGACGCGCATGATGGCCGATATGATGCCTTTCTTGGTGTTCGTAAAA
GCGTCGAGCGCAGCGATGGTAGACCTCAAGGTGAACCCGCCATGTGTCCG
TCCGCTGTGTCAAAGTGCATGTCTATAGGAACTGATATTGCGCTCAACAG
CCAACTGGCTCGTCGTCACAAAGCGCCGTTCCATGCCATTGAGGATGCGC
AACGGGTTGTGCAACTGGTTACGGAGTCGGTGGATGAACTTGCTACACTT
TCAGTGCAGCAGCGAAGCGCCAGGGTGAAGGCATATCATGTGCTGGGTAG
TAACGCCGCCAAGCTGTGGAGTGTGCAGAGCAGCATGCAAGACGCCAGTC
AGGAACGGTTGCAAGTTGTGGCTGAGAGTGAGCGCAGAGGAGGCATGTCA
CACGTTATGCAGCGCGCTTTGCTTGGTGACAACGGACTGGTGGATGTCGA
TGACTTGAGAGTGAATGGCGCCTATGTGGCCCTTGGAATGTGTGTCGATT
CTGTTGGCTGCTCGTCCGCCATGGCGTGGTTGTCCGGTGCCGAACAAATT
GCTACCGACGGCCGTGAGCGATAG