Ggra2040.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2040.t1
Unique NameGgra2040.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length124
Homology
BLAST of Ggra2040.t1 vs. uniprot
Match: A0A2V3J433 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J433_9FLOR)

HSP 1 Score: 186 bits (473), Expect = 4.310e-59
Identity = 95/111 (85.59%), Postives = 100/111 (90.09%), Query Frame = 0
Query:    1 MATSSVLYAAAKEIGATCDAENRAFLKCKSIDEDPAACLDKGEAVQTCALSVLKSAMATCESTFQSYATCLDNQISQEYMFERCRKQEHAFTECRNRAKSPESVVAAAPSE 111
            MATSSVLYAAAKEIGATCDAENRAFLKCK+ DEDPAACLDKGEAVQ+CAL VLKSAMATC+ TFQSYATCLDNQISQEYMFERCRKQE AF ECR +A S  SVVAA P +
Sbjct:    1 MATSSVLYAAAKEIGATCDAENRAFLKCKNADEDPAACLDKGEAVQSCALGVLKSAMATCQKTFQSYATCLDNQISQEYMFERCRKQESAFAECRQKANSSASVVAATPKD 111          
BLAST of Ggra2040.t1 vs. uniprot
Match: R7Q9X9 (NADH-ubiquinone oxidoreductase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9X9_CHOCR)

HSP 1 Score: 164 bits (414), Expect = 5.950e-50
Identity = 82/111 (73.87%), Postives = 93/111 (83.78%), Query Frame = 0
Query:    1 MATSSVLYAAAKEIGATCDAENRAFLKCKSIDEDPAACLDKGEAVQTCALSVLKSAMATCESTFQSYATCLDNQISQEYMFERCRKQEHAFTECRNRAKSPESVVAAAPSE 111
            MATSSVLYAAAKEIG TCDA NR FL+CK  DEDPAACLDKGEAVQ CAL VLKSAM TC+ +FQ+YA C+D+QIS+EYMFERCRK+EH F  CR+ AK   SVVA+A +E
Sbjct:    1 MATSSVLYAAAKEIGVTCDATNRDFLQCKVADEDPAACLDKGEAVQACALGVLKSAMETCKESFQAYADCIDSQISEEYMFERCRKEEHTFANCRSAAKGANSVVASATTE 111          
BLAST of Ggra2040.t1 vs. uniprot
Match: M2X817 (NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex 8 isoform 2 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X817_GALSU)

HSP 1 Score: 101 bits (252), Expect = 2.520e-25
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 0
Query:    1 MATSSVLYAAAKEIGATCDAENRAFLKCKSIDEDPAACLDKGEAVQTCALSVLKSAMATCESTFQSYATCLDNQISQEYMFERCRKQEHA 90
            + TSSVLYAAA+EIG  C  ENRAFL+CKS +++P  CL +GE V  C L +LK   ATC   F+ Y+ CLD Q SQ Y+F+RCRK E +
Sbjct:    9 LTTSSVLYAAAREIGRRCAKENRAFLECKSKEDNPEECLREGEKVTNCVLQLLKELNATCPKEFEDYSACLDRQSSQLYLFDRCRKFERS 98          
BLAST of Ggra2040.t1 vs. uniprot
Match: A0A1X6PIW6 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PIW6_PORUM)

HSP 1 Score: 101 bits (251), Expect = 3.370e-25
Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = 0
Query:    1 MATSSVLYAAAKEIGATCDAENRAFLKCKSIDEDPAACLDKGEAVQTCALSVLKSAMATCESTFQSYATCLDNQISQEYMFERCRKQEHAFTECRNRAKSPES----VVAAAPSE 111
            +ATS+VLYAAA+E+   C   N  FL CK+ D +PAACL +GE VQ C+L+++K   + C S    Y++C+D Q S+EYMFERCR+++ A   CR  A    +    VVAAA S+
Sbjct:   10 VATSAVLYAAARELSRVCGRVNAEFLACKAKDGNPAACLAEGERVQRCSLNLIKELSSKCPSELSGYSSCIDRQSSEEYMFERCRREQAALARCRGTAARVPAEAAPVVAAAASK 124          
BLAST of Ggra2040.t1 vs. uniprot
Match: A0A1Y1I6V0 (NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex 8 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I6V0_KLENI)

HSP 1 Score: 82.4 bits (202), Expect = 1.560e-17
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 0
Query:    1 MATSSVLYAAAKEIGATCDAENRAFLKCKSIDEDPAACLDKGEAVQTCALSVLKSAMATCESTFQSYATCLDNQISQEYMFERCRKQEHAF 91
            +ATS+VL +AAK IG  C  EN AFL CK  DE P +CLDKGE V  C +S+LK     C   F +Y  C+D + ++   F+ CRK++  F
Sbjct:   57 VATSAVLMSAAKHIGKNCARENHAFLDCKRADETPESCLDKGEQVSRCVVSLLKELNGKCPKAFNAYVKCMDYRTNE---FDLCRKEQAEF 144          
BLAST of Ggra2040.t1 vs. uniprot
Match: A9TVP2 (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TVP2_PHYPA)

HSP 1 Score: 73.6 bits (179), Expect = 1.370e-14
Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = 0
Query:    3 TSSVLYAAAKEIGATCDAENRAFLKCKSIDEDPAACLDKGEAVQTCALSVLKSAMATCESTFQSYATCLDNQISQEYMFERCRKQEHAFTEC 94
            TS+VL +A+K I + C A NRAFL CK  D +P  CL +G+ V  C +S+L+     C    +SY  C+D   ++   FE CRK++  F  C
Sbjct:   12 TSAVLMSASKYINSKCSAHNRAFLDCKKNDPNPEKCLQQGQNVTRCVISLLRELNTKCPKAMESYTKCMDYYSNE---FELCRKEQREFESC 100          
BLAST of Ggra2040.t1 vs. uniprot
Match: A9TBG6 (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TBG6_PHYPA)

HSP 1 Score: 73.6 bits (179), Expect = 1.480e-14
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0
Query:    3 TSSVLYAAAKEIGATCDAENRAFLKCKSIDEDPAACLDKGEAVQTCALSVLKSAMATCESTFQSYATCLDNQISQEYMFERCRKQEHAF 91
            TS+VL +++K I + C AENRAFL CK  D +P  CL KG+ V  C +S+L+     C    +SY  C+D   ++   FE CRK++  F
Sbjct:   15 TSAVLMSSSKHIASKCGAENRAFLDCKKNDPNPEKCLQKGQNVTQCVISLLRELNTKCPKAMESYTKCMDYYSNE---FELCRKEQREF 100          
BLAST of Ggra2040.t1 vs. uniprot
Match: W1PT74 (CHCH domain-containing protein n=2 Tax=Amborella trichopoda TaxID=13333 RepID=W1PT74_AMBTC)

HSP 1 Score: 73.2 bits (178), Expect = 2.150e-14
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 0
Query:    3 TSSVLYAAAKEIGATCDAENRAFLKCKSIDEDPAACLDKGEAVQTCALSVLKSAMATCESTFQSYATCLDNQISQEYMFERCRKQEHAF 91
            TS+VL AA+K I   C AENR FL CK  D +P  CLDKG+ V  C LS+LK    TC     +Y  C+    ++   FE CRK++  F
Sbjct:   14 TSAVLMAASKHIARKCRAENRDFLNCKRKDPNPEKCLDKGQEVTRCVLSLLKGLHRTCGKEMDAYVGCMYYHTNE---FELCRKEQELF 99          
BLAST of Ggra2040.t1 vs. uniprot
Match: A0A443PS82 (NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 8-B-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PS82_9MAGN)

HSP 1 Score: 73.2 bits (178), Expect = 2.150e-14
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 0
Query:    3 TSSVLYAAAKEIGATCDAENRAFLKCKSIDEDPAACLDKGEAVQTCALSVLKSAMATCESTFQSYATCLDNQISQEYMFERCRKQEHAF 91
            TS+VL A++K I  +C AEN AFL+CK  D +P  CLDKG+ V  C LS+LK     C     +YA C+    ++   FE CRK++  F
Sbjct:   14 TSAVLMASSKHIATSCRAENVAFLQCKKNDPNPEKCLDKGQQVTRCVLSLLKGLHQRCSKEMDAYAGCMYYHTNE---FELCRKEQREF 99          
BLAST of Ggra2040.t1 vs. uniprot
Match: A0A5P1E9V3 (CHCH domain-containing protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1E9V3_ASPOF)

HSP 1 Score: 72.4 bits (176), Expect = 4.650e-14
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 0
Query:    3 TSSVLYAAAKEIGATCDAENRAFLKCKSIDEDPAACLDKGEAVQTCALSVLKSAMATCESTFQSYATCLDNQISQEYMFERCRKQEHAF 91
            TS+VL A++K I A C +EN AF+ CK  D +P  CL+KG+ V  C L++LKS    C     +YA C+    ++   F+ CRK++ AF
Sbjct:   16 TSAVLMASSKHIAAACRSENMAFINCKKKDPNPEKCLEKGQQVSRCVLTLLKSLHQRCTKEMDAYAGCMYYHTNE---FDLCRKEQQAF 101          
The following BLAST results are available for this feature:
BLAST of Ggra2040.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4334.310e-5985.59NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
R7Q9X95.950e-5073.87NADH-ubiquinone oxidoreductase n=1 Tax=Chondrus cr... [more]
M2X8172.520e-2555.56NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex... [more]
A0A1X6PIW63.370e-2546.96Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1Y1I6V01.560e-1746.15NADH dehydrogenase (Ubiquinone) 1 alpha subcomplex... [more]
A9TVP21.370e-1440.22Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A9TBG61.480e-1441.57Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
W1PT742.150e-1444.94CHCH domain-containing protein n=2 Tax=Amborella t... [more]
A0A443PS822.150e-1443.82NADH dehydrogenase ubiquinone 1 alpha subcomplex s... [more]
A0A5P1E9V34.650e-1441.57CHCH domain-containing protein n=1 Tax=Asparagus o... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..123
NoneNo IPR availablePANTHERPTHR13344:SF0NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 8coord: 2..96
IPR016680NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 8PANTHERPTHR13344NADH-UBIQUINONE OXIDOREDUCTASEcoord: 2..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000030_piloncontigtig00000030_pilon:129917..130288 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2040.t1Ggra2040.t1Gracilaria gracilis GNS1m malemRNAtig00000030_pilon 129917..130288 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2040.t1 ID=Ggra2040.t1|Name=Ggra2040.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=124bp
MATSSVLYAAAKEIGATCDAENRAFLKCKSIDEDPAACLDKGEAVQTCAL
SVLKSAMATCESTFQSYATCLDNQISQEYMFERCRKQEHAFTECRNRAKS
PESVVAAAPSESGKHKDADRRAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016680NDUFA8