Ggra2040.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2040.t1
Unique NameGgra2040.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length124
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000030_piloncontigtig00000030_pilon:129917..130288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMA090CT
Preferred nameNDUFA8
PFAMsCHCH
Max annot lvl2759|Eukaryota
KEGG koko:K03952
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005758,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009536,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue3.42e-28
EggNOG OGsKOG3458@1|root,KOG3458@2759|Eukaryota
Descriptionmitochondrial electron transport, NADH to ubiquinone
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2040Ggra2040Gracilaria gracilis GNS1m malegenetig00000030_pilon 129917..130288 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2040.t1.stop1Ggra2040.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000030_pilon 129917..129919 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2040.t1.CDS1Ggra2040.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000030_pilon 129917..130288 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2040.t1.exon1Ggra2040.t1.exon1Gracilaria gracilis GNS1m maleexontig00000030_pilon 129917..130288 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2040.t1.start1Ggra2040.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000030_pilon 130286..130288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2040.t1Ggra2040.t1Gracilaria gracilis GNS1m malepolypeptidetig00000030_pilon 129917..130288 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2040.t1 ID=Ggra2040.t1|Name=Ggra2040.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=124bp
MATSSVLYAAAKEIGATCDAENRAFLKCKSIDEDPAACLDKGEAVQTCAL
SVLKSAMATCESTFQSYATCLDNQISQEYMFERCRKQEHAFTECRNRAKS
PESVVAAAPSESGKHKDADRRAA*
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spliced messenger RNA

>Ggra2040.t1 ID=Ggra2040.t1|Name=Ggra2040.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp|location=Sequence derived from alignment at tig00000030_pilon:129917..130288- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACCTCGTCAGTTCTCTACGCGGCCGCGAAGGAGATCGGAGCTAC
GTGTGATGCGGAGAATCGTGCCTTTCTGAAATGCAAGAGTATCGATGAAG
ATCCAGCGGCGTGCCTGGACAAAGGCGAAGCCGTACAAACATGCGCACTG
AGCGTTCTCAAGTCCGCCATGGCTACATGCGAAAGTACTTTTCAAAGCTA
CGCTACGTGTTTGGACAATCAGATTTCGCAGGAGTACATGTTTGAGCGAT
GTCGGAAACAAGAGCATGCGTTTACTGAGTGCAGAAACAGAGCCAAGAGT
CCTGAATCGGTCGTTGCCGCAGCTCCTTCCGAAAGCGGAAAGCACAAGGA
TGCTGATCGCCGGGCAGCCTGA
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protein sequence of Ggra2040.t1

>Ggra2040.t1 ID=Ggra2040.t1|Name=Ggra2040.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=124bp
MATSSVLYAAAKEIGATCDAENRAFLKCKSIDEDPAACLDKGEAVQTCAL
SVLKSAMATCESTFQSYATCLDNQISQEYMFERCRKQEHAFTECRNRAKS
PESVVAAAPSESGKHKDADRRAA*
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mRNA from alignment at tig00000030_pilon:129917..130288-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2040.t1 ID=Ggra2040.t1|Name=Ggra2040.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp|location=Sequence derived from alignment at tig00000030_pilon:129917..130288- (Gracilaria gracilis GNS1m male)
ATGGCAACCTCGTCAGTTCTCTACGCGGCCGCGAAGGAGATCGGAGCTAC
GTGTGATGCGGAGAATCGTGCCTTTCTGAAATGCAAGAGTATCGATGAAG
ATCCAGCGGCGTGCCTGGACAAAGGCGAAGCCGTACAAACATGCGCACTG
AGCGTTCTCAAGTCCGCCATGGCTACATGCGAAAGTACTTTTCAAAGCTA
CGCTACGTGTTTGGACAATCAGATTTCGCAGGAGTACATGTTTGAGCGAT
GTCGGAAACAAGAGCATGCGTTTACTGAGTGCAGAAACAGAGCCAAGAGT
CCTGAATCGGTCGTTGCCGCAGCTCCTTCCGAAAGCGGAAAGCACAAGGA
TGCTGATCGCCGGGCAGCCTGA
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Coding sequence (CDS) from alignment at tig00000030_pilon:129917..130288-

>Ggra2040.t1 ID=Ggra2040.t1|Name=Ggra2040.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=372bp|location=Sequence derived from alignment at tig00000030_pilon:129917..130288- (Gracilaria gracilis GNS1m male)
ATGGCAACCTCGTCAGTTCTCTACGCGGCCGCGAAGGAGATCGGAGCTAC
GTGTGATGCGGAGAATCGTGCCTTTCTGAAATGCAAGAGTATCGATGAAG
ATCCAGCGGCGTGCCTGGACAAAGGCGAAGCCGTACAAACATGCGCACTG
AGCGTTCTCAAGTCCGCCATGGCTACATGCGAAAGTACTTTTCAAAGCTA
CGCTACGTGTTTGGACAATCAGATTTCGCAGGAGTACATGTTTGAGCGAT
GTCGGAAACAAGAGCATGCGTTTACTGAGTGCAGAAACAGAGCCAAGAGT
CCTGAATCGGTCGTTGCCGCAGCTCCTTCCGAAAGCGGAAAGCACAAGGA
TGCTGATCGCCGGGCAGCCTGA
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