Ggra2011.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2011.t1
Unique NameGgra2011.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length110
Homology
BLAST of Ggra2011.t1 vs. uniprot
Match: A0A2V3J652 (Thioredoxin n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J652_9FLOR)

HSP 1 Score: 165 bits (417), Expect = 2.230e-50
Identity = 76/109 (69.72%), Postives = 96/109 (88.07%), Query Frame = 0
Query:    1 MLVLNAGSTTEMDKILDMADGSLVVVDYSTTWCGPCKKIAPEFERISEEHSDVVFVKVMGDADADSGELMKREGIRAVPAFHFWKHKKKVLEFSGAKVDDLQRNVEKFK 109
            MLVL+A ST EMD+IL  AD +LVVVDYST+WCGPCKK AP FE +S++++DVVFVKVMGDA A+S ELMKREGIRAVPAFHFWK ++KVL+F+GA++D+L+RN+ + K
Sbjct:   39 MLVLDATSTAEMDQILQSADENLVVVDYSTSWCGPCKKFAPVFEELSDKYADVVFVKVMGDASAESSELMKREGIRAVPAFHFWKQQQKVLDFTGARMDELERNINELK 147          
BLAST of Ggra2011.t1 vs. uniprot
Match: A0A7S2ZP51 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZP51_9RHOD)

HSP 1 Score: 144 bits (362), Expect = 7.940e-42
Identity = 65/109 (59.63%), Postives = 87/109 (79.82%), Query Frame = 0
Query:    1 MLVLNAGSTTEMDKILDMADGSLVVVDYSTTWCGPCKKIAPEFERISEEHSDVVFVKVMGDADADSGELMKREGIRAVPAFHFWKHKKKVLEFSGAKVDDLQRNVEKFK 109
            MLV + GS  E+DK+L+ A  SLVVVDYST+WCGPCK I P+F+++SEE+SDVVF+KVMGD D D+ E+MK E IRAVPAFHFWK K++V   +GA+ DD++  ++ +K
Sbjct:   53 MLVSDIGSKAELDKVLEGAGSSLVVVDYSTSWCGPCKMIEPKFQQMSEEYSDVVFLKVMGDKDEDTQEMMKTESIRAVPAFHFWKEKERVHTITGARTDDIESAIDTYK 161          
BLAST of Ggra2011.t1 vs. uniprot
Match: A0A1X6NNW6 (Thioredoxin domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NNW6_PORUM)

HSP 1 Score: 135 bits (340), Expect = 1.220e-38
Identity = 62/102 (60.78%), Postives = 81/102 (79.41%), Query Frame = 0
Query:    2 LVLNAGSTTEMDKILDMAD--GSLVVVDYSTTWCGPCKKIAPEFERISEEHSDVVFVKVMGDADADSGELMKREGIRAVPAFHFWKHKKKVLEFSGAKVDDL 101
            LV++ GS  ++  ++D A    +LVV+DYSTTWCGPCK +AP+++ +S+EH  VVF KVMGDADADS  LMKREGIRAVPAFHFWK  ++V E +GAK+DD+
Sbjct:   40 LVVDVGSAEQLQVVIDSASEANALVVIDYSTTWCGPCKVVAPKYDALSDEHPSVVFCKVMGDADADSSALMKREGIRAVPAFHFWKGGERVDEVTGAKIDDV 141          
BLAST of Ggra2011.t1 vs. uniprot
Match: A0A6H5K2L8 (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L8_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 6.800e-36
Identity = 58/108 (53.70%), Postives = 81/108 (75.00%), Query Frame = 0
Query:    1 MLVLNAGSTTEMDKILDMADGSLVVVDYSTTWCGPCKKIAPEFERISEEHSDVVFVKVMGDADADSGELMKREGIRAVPAFHFWKHKKKVLEFSGAKVDDLQRNVEKF 108
            M V++ GS  E+DK+       LVVVDYSTTWCGPCK I P+FE+++E++SD VFVKV+GD+  D+ +LMKREG+R+VP+FHFWK  KKV + +GA  + L++ +  F
Sbjct:   54 MKVIDIGSFAELDKLTSDNKDKLVVVDYSTTWCGPCKMILPKFEKLAEQYSDAVFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVEKVNGANEEALEQTLRDF 161          
BLAST of Ggra2011.t1 vs. uniprot
Match: D7FM89 (Flagellar outer arm dynein 14 kDa light chain LC5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM89_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 5.000e-35
Identity = 56/102 (54.90%), Postives = 77/102 (75.49%), Query Frame = 0
Query:    7 GSTTEMDKILDMADGSLVVVDYSTTWCGPCKKIAPEFERISEEHSDVVFVKVMGDADADSGELMKREGIRAVPAFHFWKHKKKVLEFSGAKVDDLQRNVEKF 108
            GS  E+DK+       LVVVDYSTTWCGPCK I P+FE+++E++SD VFVKV+GD+  D+ +LMKREG+R+VP+FHFWK  KKV + +GA  + L++ +  F
Sbjct:   21 GSFAELDKLTSDNKDKLVVVDYSTTWCGPCKMILPKFEKLAEQYSDAVFVKVIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVEKVNGANEEALEQTLRDF 122          
BLAST of Ggra2011.t1 vs. uniprot
Match: A0A7R9U0I5 (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0I5_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.670e-34
Identity = 59/102 (57.84%), Postives = 75/102 (73.53%), Query Frame = 0
Query:    1 MLVLNAGSTTEMDKILDMADGSLVVVDYSTTWCGPCKKIAPEFERISEEHSDVVFVKVMGDADADSGELMKREGIRAVPAFHFWKHKKKVLEFSGAKVDDLQ 102
            M V+  G T + DK L  A  ++VVVDYSTTWCGPCK IAP F  +SE+H D VF+KV+GD+ A++ +LMKREG+R+VPAFHFWK  +KV   SGA  D L+
Sbjct:   42 MAVVEIGDTDKFDKALSAAGDAVVVVDYSTTWCGPCKVIAPFFAELSEKHQDTVFLKVIGDSSAEATKLMKREGVRSVPAFHFWKGGEKVDIVSGANPDALE 143          
BLAST of Ggra2011.t1 vs. uniprot
Match: A0A7S4M2U2 (Hypothetical protein n=2 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2U2_9EUKA)

HSP 1 Score: 123 bits (308), Expect = 9.310e-34
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = 0
Query:    2 LVLNAGSTTEMDKILDMADGSLVVVDYSTTWCGPCKKIAPEFERISEEHSDVVFVKVMGDADADSGELMKREGIRAVPAFHFWKHKKKVLEFSGAKVDDLQRNVE 106
            +V++  ST E +  L+ A  SLVV+DYST+WCGPCK IAP+F+ +SE++ +V F+KVMGD+  ++ +LM+ +G+RA+P+FHFWK+KK+V   SGAK   LQ  +E
Sbjct:   44 VVIDISSTDEFNDALETAGDSLVVIDYSTSWCGPCKIIAPKFDELSEQYKNVAFLKVMGDSSPEADKLMRSQGVRALPSFHFWKNKKQVDSVSGAKTQALQDAIE 148          
BLAST of Ggra2011.t1 vs. uniprot
Match: A0A7S3BN94 (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BN94_9EUKA)

HSP 1 Score: 122 bits (307), Expect = 1.210e-33
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = 0
Query:    2 LVLNAGSTTEMDKILDMADGSLVVVDYSTTWCGPCKKIAPEFERISEEHSDVVFVKVMGDADADSGELMKREGIRAVPAFHFWKHKKKVLEFSGAKVDDLQRNVE 106
            +V++  ST E +  L+ A  SLVV+DYST+WCGPCK IAP+++ +SE++ +V F+KVMGD+  D+ +LM+ +G+RA+P+FHFWK+KK+V   SGAK   LQ  +E
Sbjct:   41 VVVDITSTDEFNNALETAGDSLVVIDYSTSWCGPCKIIAPKYDELSEQYKNVAFLKVMGDSSPDADKLMRSQGVRALPSFHFWKNKKQVDSVSGAKTQALQDAIE 145          
BLAST of Ggra2011.t1 vs. uniprot
Match: A0A6S9BEG3 (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9BEG3_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.320e-33
Identity = 56/107 (52.34%), Postives = 80/107 (74.77%), Query Frame = 0
Query:    1 MLVLNAGSTTEMDKILDMADGSLVVVDYSTTWCGPCKKIAPEFERISEEHSDVVFVKVMGDADADSGELMKREGIRAVPAFHFWKHKKKVLEFSGAKVDDLQRNVEK 107
            M V++  S  + DK ++ A  SLVVVDYSTTWCGPCK IAP+F+ +SE++SD VFVKV+GDA  D+ +LMKREG+R+VP+FH++K  +KV   +GA  + ++  + K
Sbjct:   43 MAVVDIDSEAKFDKTIESAGDSLVVVDYSTTWCGPCKVIAPKFDELSEQYSDAVFVKVIGDASPDASKLMKREGVRSVPSFHYFKGGEKVEVVNGANAEAIEAAITK 149          
BLAST of Ggra2011.t1 vs. uniprot
Match: A0A0M0JFB9 (Thioredoxin f n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFB9_9EUKA)

HSP 1 Score: 121 bits (304), Expect = 3.770e-33
Identity = 54/105 (51.43%), Postives = 78/105 (74.29%), Query Frame = 0
Query:    2 LVLNAGSTTEMDKILDMADGSLVVVDYSTTWCGPCKKIAPEFERISEEHSDVVFVKVMGDADADSGELMKREGIRAVPAFHFWKHKKKVLEFSGAKVDDLQRNVE 106
            +V++  ST E +K LD A  +LVVVDYST+WCGPCK IAP+F+  SE++  V F+KVMGD+   + +LM+ +G+RA+P+FHFWK+K+++   SGAK   LQ  +E
Sbjct:   44 VVVDISSTEEFEKALDEAGPALVVVDYSTSWCGPCKIIAPKFDEFSEQYKSVTFLKVMGDSSPAADKLMRSQGVRALPSFHFWKNKEQIESISGAKTQALQDAIE 148          
The following BLAST results are available for this feature:
BLAST of Ggra2011.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6522.230e-5069.72Thioredoxin n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
A0A7S2ZP517.940e-4259.63Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6NNW61.220e-3860.78Thioredoxin domain-containing protein n=1 Tax=Porp... [more]
A0A6H5K2L86.800e-3653.70Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
D7FM895.000e-3554.90Flagellar outer arm dynein 14 kDa light chain LC5 ... [more]
A0A7R9U0I51.670e-3457.84Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4M2U29.310e-3451.43Hypothetical protein n=2 Tax=Prymnesium polylepis ... [more]
A0A7S3BN941.210e-3351.43Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A6S9BEG31.320e-3352.34Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A0M0JFB93.770e-3351.43Thioredoxin f n=1 Tax=Chrysochromulina tobinii Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 98..109
NoneNo IPR availablePRINTSPR00421THIOREDOXINcoord: 32..41
score: 68.39
coord: 74..85
score: 28.29
coord: 24..32
score: 37.9
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 2..109
e-value: 2.4E-28
score: 100.3
NoneNo IPR availablePANTHERPTHR46115THIOREDOXIN-LIKE PROTEIN 1coord: 3..109
NoneNo IPR availablePANTHERPTHR46115:SF1THIOREDOXIN-LIKE PROTEIN 1coord: 3..109
NoneNo IPR availableCDDcd02947TRX_familycoord: 18..106
e-value: 6.69192E-25
score: 87.9988
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 20..106
e-value: 6.7E-19
score: 67.8
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 4..109
score: 11.674513
IPR017937Thioredoxin, conserved sitePROSITEPS00194THIOREDOXIN_1coord: 25..43
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 11..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:139841..140170 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2011.t1Ggra2011.t1Gracilaria gracilis GNS1m malemRNAtig00000925_pilon 139841..140170 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2011.t1 ID=Ggra2011.t1|Name=Ggra2011.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=110bp
MLVLNAGSTTEMDKILDMADGSLVVVDYSTTWCGPCKKIAPEFERISEEH
SDVVFVKVMGDADADSGELMKREGIRAVPAFHFWKHKKKVLEFSGAKVDD
LQRNVEKFK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013766Thioredoxin_domain
IPR017937Thioredoxin_CS
IPR036249Thioredoxin-like_sf