Ggra2011.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2011.t1
Unique NameGgra2011.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length110
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:139841..140170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FM89
Preferred nameTrx-f
PFAMsPAW,Thioredoxin,Transglut_core
Max annot lvl2759|Eukaryota
KEGG koko:K01456,ko:K03671
KEGG Pathwayko04141,ko04621,ko05418,map04141,map04621,map05418
GOsGO:0000224,GO:0001558,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006516,GO:0006517,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008361,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010721,GO:0010769,GO:0010771,GO:0010975,GO:0010977,GO:0015035,GO:0015036,GO:0016043,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016787,GO:0016810,GO:0016811,GO:0019538,GO:0019725,GO:0019941,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0030163,GO:0030308,GO:0030433,GO:0031344,GO:0031345,GO:0032501,GO:0032502,GO:0032535,GO:0033554,GO:0034976,GO:0036211,GO:0036503,GO:0040008,GO:0042221,GO:0042592,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045926,GO:0047134,GO:0048519,GO:0048523,GO:0048638,GO:0048640,GO:0048670,GO:0048671,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050770,GO:0050771,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051603,GO:0051716,GO:0051960,GO:0051961,GO:0055114,GO:0060284,GO:0061387,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0090066,GO:0120035,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:2000026
Evalue1.52e-36
EggNOG OGsCOG0526@1|root,KOG0907@2759|Eukaryota
EC3.5.1.52
Descriptioncell redox homeostasis
COG categoryCO
BRITEko00000,ko00001,ko01000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2011Ggra2011Gracilaria gracilis GNS1m malegenetig00000925_pilon 139841..140170 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2011.t1.start1Ggra2011.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 139841..139843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2011.t1.CDS1Ggra2011.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 139841..140170 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2011.t1.exon1Ggra2011.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 139841..140170 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2011.t1.stop1Ggra2011.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 140168..140170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2011.t1Ggra2011.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 139841..140170 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2011.t1 ID=Ggra2011.t1|Name=Ggra2011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=110bp
MLVLNAGSTTEMDKILDMADGSLVVVDYSTTWCGPCKKIAPEFERISEEH
SDVVFVKVMGDADADSGELMKREGIRAVPAFHFWKHKKKVLEFSGAKVDD
LQRNVEKFK*
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spliced messenger RNA

>Ggra2011.t1 ID=Ggra2011.t1|Name=Ggra2011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=330bp|location=Sequence derived from alignment at tig00000925_pilon:139841..140170+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGTGCTCAACGCGGGCAGCACGACGGAGATGGACAAGATTCTGGA
CATGGCGGACGGCTCGCTGGTGGTGGTGGACTACTCCACCACGTGGTGCG
GCCCGTGCAAGAAGATAGCGCCCGAGTTTGAGCGCATCAGCGAGGAGCAC
TCGGACGTGGTGTTCGTCAAGGTGATGGGCGACGCCGACGCCGACAGCGG
CGAATTGATGAAGCGCGAGGGCATTCGCGCCGTGCCCGCCTTCCACTTCT
GGAAGCACAAGAAGAAGGTGTTGGAGTTTAGCGGCGCCAAGGTGGACGAC
CTGCAGCGCAACGTGGAAAAGTTCAAGTAA
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protein sequence of Ggra2011.t1

>Ggra2011.t1 ID=Ggra2011.t1|Name=Ggra2011.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=110bp
MLVLNAGSTTEMDKILDMADGSLVVVDYSTTWCGPCKKIAPEFERISEEH
SDVVFVKVMGDADADSGELMKREGIRAVPAFHFWKHKKKVLEFSGAKVDD
LQRNVEKFK*
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mRNA from alignment at tig00000925_pilon:139841..140170+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2011.t1 ID=Ggra2011.t1|Name=Ggra2011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=330bp|location=Sequence derived from alignment at tig00000925_pilon:139841..140170+ (Gracilaria gracilis GNS1m male)
ATGCTGGTGCTCAACGCGGGCAGCACGACGGAGATGGACAAGATTCTGGA
CATGGCGGACGGCTCGCTGGTGGTGGTGGACTACTCCACCACGTGGTGCG
GCCCGTGCAAGAAGATAGCGCCCGAGTTTGAGCGCATCAGCGAGGAGCAC
TCGGACGTGGTGTTCGTCAAGGTGATGGGCGACGCCGACGCCGACAGCGG
CGAATTGATGAAGCGCGAGGGCATTCGCGCCGTGCCCGCCTTCCACTTCT
GGAAGCACAAGAAGAAGGTGTTGGAGTTTAGCGGCGCCAAGGTGGACGAC
CTGCAGCGCAACGTGGAAAAGTTCAAGTAA
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Coding sequence (CDS) from alignment at tig00000925_pilon:139841..140170+

>Ggra2011.t1 ID=Ggra2011.t1|Name=Ggra2011.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=330bp|location=Sequence derived from alignment at tig00000925_pilon:139841..140170+ (Gracilaria gracilis GNS1m male)
ATGCTGGTGCTCAACGCGGGCAGCACGACGGAGATGGACAAGATTCTGGA
CATGGCGGACGGCTCGCTGGTGGTGGTGGACTACTCCACCACGTGGTGCG
GCCCGTGCAAGAAGATAGCGCCCGAGTTTGAGCGCATCAGCGAGGAGCAC
TCGGACGTGGTGTTCGTCAAGGTGATGGGCGACGCCGACGCCGACAGCGG
CGAATTGATGAAGCGCGAGGGCATTCGCGCCGTGCCCGCCTTCCACTTCT
GGAAGCACAAGAAGAAGGTGTTGGAGTTTAGCGGCGCCAAGGTGGACGAC
CTGCAGCGCAACGTGGAAAAGTTCAAGTAA
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