Ggra2007.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra2007.t1
Unique NameGgra2007.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length310
Homology
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BLAST of Ggra2007.t1 vs. uniprot
Match: A0A2V3J600 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J600_9FLOR)

HSP 1 Score: 190 bits (482), Expect = 9.600e-55
Identity = 114/311 (36.66%), Postives = 172/311 (55.31%), Query Frame = 0 
Query:    8 SKISRCLWLLLAIIVIREHVSQRS--SIAKHPKNQASEHSVHELESKLKDEGTERTSSG------VIVYRVCTENCDAPQANPLNVPSHLRDVAKVGNIVEAKVPDEESLDLYDPPIPIIGTDLHNARNIYASDVAIFQTHVNIWRDLYHGGSTWTLVFNCKLNNMERIIAHLIETRVWDKMTSE--WSSHDFEWDMLMLSSAQSKDATRNAPEEVV---KSASQIRVDDVHAYALHKRGSEILLSHTKAFTLPLSEFLDVVLMRATEFRVGRMTMTFVSLSDICEKRTRFIPSNLLPFYPPLHWTYTKGK 305
            S+ S+ LW +L +I+I E + ++S  +I    K  + + S+H   +K   EG  R + G      + +++VC   C +      N   H    AK G I    V +  S+D +DPPIPIIGTD  N R+IYASDVA F THV IWR+++H   +  LV +C++NN++ ++  L+  ++ D M  +         W+ML+  +   K   R+   E +   K   Q+   D+  YAL+KRG+++LLS+TKA+T+PL  FL  V+ R  +FRVGR+      L   C +    + SNLLPFYPPL+WTY   K
Sbjct:    4 SRTSKQLWFVLLVIIISECIRKKSLSAIRDQSKRASYKESIHSF-NKFAAEGHNRETRGSELNGSLSIFQVCL--CRSQNNLSTNASIHTIVNAKGGTITRIDVQNSSSVDFFDPPIPIIGTDDANTRDIYASDVAEFATHVKIWREVFHMKHSCALVISCEVNNVDEVLNRLLGEKLCDIMQRDNGIERKPKAWEMLVFGA---KRVHRHQDYEALGSTKEIDQVLSGDMLVYALNKRGADLLLSYTKAYTVPLEAFLHAVITRKKQFRVGRLNAARAMLGHECTRSGHAMKSNLLPFYPPLYWTYLASK 308
The following BLAST results are available for this feature:
BLAST of Ggra2007.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J6009.600e-5536.66Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..53
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..309
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:132515..133444 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2007.t1Ggra2007.t1Gracilaria gracilis GNS1m malemRNAtig00000925_pilon 132515..133444 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra2007.t1 ID=Ggra2007.t1|Name=Ggra2007.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=310bp
MPQNSVRSKISRCLWLLLAIIVIREHVSQRSSIAKHPKNQASEHSVHELE
SKLKDEGTERTSSGVIVYRVCTENCDAPQANPLNVPSHLRDVAKVGNIVE
AKVPDEESLDLYDPPIPIIGTDLHNARNIYASDVAIFQTHVNIWRDLYHG
GSTWTLVFNCKLNNMERIIAHLIETRVWDKMTSEWSSHDFEWDMLMLSSA
QSKDATRNAPEEVVKSASQIRVDDVHAYALHKRGSEILLSHTKAFTLPLS
EFLDVVLMRATEFRVGRMTMTFVSLSDICEKRTRFIPSNLLPFYPPLHWT
YTKGKPQQP*
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