Ggra2007.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2007.t1
Unique NameGgra2007.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000925_piloncontigtig00000925_pilon:132515..133444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2007Ggra2007Gracilaria gracilis GNS1m malegenetig00000925_pilon 132515..133444 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2007.t1.start1Ggra2007.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000925_pilon 132515..132517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2007.t1.CDS1Ggra2007.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000925_pilon 132515..133444 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2007.t1.exon1Ggra2007.t1.exon1Gracilaria gracilis GNS1m maleexontig00000925_pilon 132515..133444 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2007.t1.stop1Ggra2007.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000925_pilon 133442..133444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2007.t1Ggra2007.t1Gracilaria gracilis GNS1m malepolypeptidetig00000925_pilon 132515..133444 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2007.t1 ID=Ggra2007.t1|Name=Ggra2007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=310bp
MPQNSVRSKISRCLWLLLAIIVIREHVSQRSSIAKHPKNQASEHSVHELE
SKLKDEGTERTSSGVIVYRVCTENCDAPQANPLNVPSHLRDVAKVGNIVE
AKVPDEESLDLYDPPIPIIGTDLHNARNIYASDVAIFQTHVNIWRDLYHG
GSTWTLVFNCKLNNMERIIAHLIETRVWDKMTSEWSSHDFEWDMLMLSSA
QSKDATRNAPEEVVKSASQIRVDDVHAYALHKRGSEILLSHTKAFTLPLS
EFLDVVLMRATEFRVGRMTMTFVSLSDICEKRTRFIPSNLLPFYPPLHWT
YTKGKPQQP*
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spliced messenger RNA

>Ggra2007.t1 ID=Ggra2007.t1|Name=Ggra2007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000925_pilon:132515..133444+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCAGAACAGTGTGCGTTCCAAGATTTCGCGGTGTTTGTGGCTTCT
TCTCGCGATAATCGTTATTAGGGAGCACGTGAGCCAGAGATCGTCGATAG
CCAAACACCCAAAGAATCAAGCTTCGGAACACAGTGTTCATGAGTTAGAA
TCAAAACTGAAGGACGAAGGGACTGAACGTACATCCAGCGGGGTTATAGT
GTATCGGGTATGCACCGAAAATTGTGATGCACCCCAAGCTAACCCACTCA
ACGTTCCGTCCCATTTGAGGGATGTTGCGAAGGTGGGCAATATAGTCGAG
GCTAAAGTGCCCGACGAAGAATCGCTTGACCTATATGATCCGCCGATACC
AATCATTGGAACCGACCTCCACAACGCTCGAAACATTTACGCAAGTGATG
TTGCGATATTCCAGACTCATGTCAACATCTGGCGGGATCTATATCACGGA
GGCAGTACTTGGACATTGGTCTTCAACTGCAAATTGAACAACATGGAACG
AATCATTGCGCATCTAATCGAAACCAGAGTGTGGGACAAAATGACTAGCG
AATGGAGCAGCCATGATTTTGAATGGGACATGCTGATGTTGAGCTCTGCT
CAGTCAAAGGACGCAACTAGAAATGCTCCGGAAGAGGTGGTCAAGAGCGC
CTCCCAAATTCGCGTTGATGACGTTCATGCTTACGCACTACACAAGCGAG
GCTCTGAAATTCTACTGTCACACACCAAAGCCTTCACGCTGCCCCTGAGT
GAATTCTTGGATGTCGTGTTGATGCGCGCTACAGAATTCAGAGTAGGGAG
AATGACCATGACATTCGTCAGTCTTTCTGATATATGCGAAAAACGAACGA
GATTCATACCCAGCAATCTGCTTCCATTCTACCCCCCATTGCACTGGACG
TACACGAAAGGAAAACCTCAACAGCCGTGA
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protein sequence of Ggra2007.t1

>Ggra2007.t1 ID=Ggra2007.t1|Name=Ggra2007.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=310bp
MPQNSVRSKISRCLWLLLAIIVIREHVSQRSSIAKHPKNQASEHSVHELE
SKLKDEGTERTSSGVIVYRVCTENCDAPQANPLNVPSHLRDVAKVGNIVE
AKVPDEESLDLYDPPIPIIGTDLHNARNIYASDVAIFQTHVNIWRDLYHG
GSTWTLVFNCKLNNMERIIAHLIETRVWDKMTSEWSSHDFEWDMLMLSSA
QSKDATRNAPEEVVKSASQIRVDDVHAYALHKRGSEILLSHTKAFTLPLS
EFLDVVLMRATEFRVGRMTMTFVSLSDICEKRTRFIPSNLLPFYPPLHWT
YTKGKPQQP*
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mRNA from alignment at tig00000925_pilon:132515..133444+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2007.t1 ID=Ggra2007.t1|Name=Ggra2007.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000925_pilon:132515..133444+ (Gracilaria gracilis GNS1m male)
ATGCCTCAGAACAGTGTGCGTTCCAAGATTTCGCGGTGTTTGTGGCTTCT
TCTCGCGATAATCGTTATTAGGGAGCACGTGAGCCAGAGATCGTCGATAG
CCAAACACCCAAAGAATCAAGCTTCGGAACACAGTGTTCATGAGTTAGAA
TCAAAACTGAAGGACGAAGGGACTGAACGTACATCCAGCGGGGTTATAGT
GTATCGGGTATGCACCGAAAATTGTGATGCACCCCAAGCTAACCCACTCA
ACGTTCCGTCCCATTTGAGGGATGTTGCGAAGGTGGGCAATATAGTCGAG
GCTAAAGTGCCCGACGAAGAATCGCTTGACCTATATGATCCGCCGATACC
AATCATTGGAACCGACCTCCACAACGCTCGAAACATTTACGCAAGTGATG
TTGCGATATTCCAGACTCATGTCAACATCTGGCGGGATCTATATCACGGA
GGCAGTACTTGGACATTGGTCTTCAACTGCAAATTGAACAACATGGAACG
AATCATTGCGCATCTAATCGAAACCAGAGTGTGGGACAAAATGACTAGCG
AATGGAGCAGCCATGATTTTGAATGGGACATGCTGATGTTGAGCTCTGCT
CAGTCAAAGGACGCAACTAGAAATGCTCCGGAAGAGGTGGTCAAGAGCGC
CTCCCAAATTCGCGTTGATGACGTTCATGCTTACGCACTACACAAGCGAG
GCTCTGAAATTCTACTGTCACACACCAAAGCCTTCACGCTGCCCCTGAGT
GAATTCTTGGATGTCGTGTTGATGCGCGCTACAGAATTCAGAGTAGGGAG
AATGACCATGACATTCGTCAGTCTTTCTGATATATGCGAAAAACGAACGA
GATTCATACCCAGCAATCTGCTTCCATTCTACCCCCCATTGCACTGGACG
TACACGAAAGGAAAACCTCAACAGCCGTGA
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Coding sequence (CDS) from alignment at tig00000925_pilon:132515..133444+

>Ggra2007.t1 ID=Ggra2007.t1|Name=Ggra2007.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=930bp|location=Sequence derived from alignment at tig00000925_pilon:132515..133444+ (Gracilaria gracilis GNS1m male)
ATGCCTCAGAACAGTGTGCGTTCCAAGATTTCGCGGTGTTTGTGGCTTCT
TCTCGCGATAATCGTTATTAGGGAGCACGTGAGCCAGAGATCGTCGATAG
CCAAACACCCAAAGAATCAAGCTTCGGAACACAGTGTTCATGAGTTAGAA
TCAAAACTGAAGGACGAAGGGACTGAACGTACATCCAGCGGGGTTATAGT
GTATCGGGTATGCACCGAAAATTGTGATGCACCCCAAGCTAACCCACTCA
ACGTTCCGTCCCATTTGAGGGATGTTGCGAAGGTGGGCAATATAGTCGAG
GCTAAAGTGCCCGACGAAGAATCGCTTGACCTATATGATCCGCCGATACC
AATCATTGGAACCGACCTCCACAACGCTCGAAACATTTACGCAAGTGATG
TTGCGATATTCCAGACTCATGTCAACATCTGGCGGGATCTATATCACGGA
GGCAGTACTTGGACATTGGTCTTCAACTGCAAATTGAACAACATGGAACG
AATCATTGCGCATCTAATCGAAACCAGAGTGTGGGACAAAATGACTAGCG
AATGGAGCAGCCATGATTTTGAATGGGACATGCTGATGTTGAGCTCTGCT
CAGTCAAAGGACGCAACTAGAAATGCTCCGGAAGAGGTGGTCAAGAGCGC
CTCCCAAATTCGCGTTGATGACGTTCATGCTTACGCACTACACAAGCGAG
GCTCTGAAATTCTACTGTCACACACCAAAGCCTTCACGCTGCCCCTGAGT
GAATTCTTGGATGTCGTGTTGATGCGCGCTACAGAATTCAGAGTAGGGAG
AATGACCATGACATTCGTCAGTCTTTCTGATATATGCGAAAAACGAACGA
GATTCATACCCAGCAATCTGCTTCCATTCTACCCCCCATTGCACTGGACG
TACACGAAAGGAAAACCTCAACAGCCGTGA
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