Ggra1866.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra1866.t2
Unique Name	Ggra1866.t2
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	918

Homology

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BLAST of Ggra1866.t2 vs. uniprot
Match: A0A2V3IPL7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPL7_9FLOR)

HSP 1 Score: 245 bits (626), Expect = 7.600e-67
Identity = 213/652 (32.67%), Postives = 311/652 (47.70%), Query Frame = 0

Query:  315 VPWPLRMIVTDAPDLEMPAIQLWLDQLDKKHIDPFSDQP-LCTIPSRHSSILSSSP--NRVNDFNEADEAAKSKEEAIFECSIRAATAAAKGEEPLAVLHLGLLFELRFRNLSQKFAMQAPMAAKALRDAYDYYAVAAELQNTSALHHIARLLYQA----WYDRKATLPALSQSQILSLLLESAIRQNFGAYRALETVCEHGIRVAMETSSPDKNIKRLGSV-SHEGSSSVVDSDLMNVMYRMGLVLRRGDNDIHIDDKLAVGCFFIARNLGHLGASLELGLFLVERAVSLDEVRQGIDMLQTLANWPLGGNTGSVESLEACFRLGRWCLLGLPHDF------------------GRPDMKNKL--MAIRYLKPAAEQNHKEAMVQYGMLHERKIIPNGNTEGH--DALEWISKAGDCPSAFSALATLEWRKAVRNWNLQTRRALNTSFGSGSAPSGDDATTGETQQARXXXXXFFRKRGP---GSKGSDQRSXXXXXXGSLTDSSSHDEALPELRRQTARILRTAEKMFQRSQQPNDL---------------------------YPEKQYDPLPLYKLGYFYNNVKDIWGICDPNVRAADLEQKARSLLSKAIERTSSSYEGIKWKRNRRNWILEDQAVVREAESLFQKL 906
            VPWPLRM+VTDA  + +    LWL +L  + IDP S QP  C  P+ ++  LSS+P    +N  + +    K++++ + EC +R+   A++  EP A LHL + FEL  ++L+++   +   A      AYDYY  AA+L +  AL H+ARL  +A    W   + + P  +   +L+LLL +A + +  A++AL  V + G+  A++   P  + +   S  S    + V++ +L NV YR+ L LR G   +   + LAV    IA    H  +SLELGL++V+ A S +E R G+D+L  L N      T + E L+ACFRLGRW   GLPH+F                  GR   +N     A   +K AAE   +EAMV YG L  +K       +G+  +   WI KAG CP A+ A A L   +A  ++  + +     SFGS         T+G      XXXXX      P   GSK S +R         L +SSS   AL  + +     L +AE + Q + Q  D                            +P +  +P P YK   F      IW  CDP+   A L+++AR LL K  E    S++   W+  RRNW  ED   VR+A  L  K+
Sbjct:    3 VPWPLRMLVTDALQIPLEVAHLWLSKLKNRTIDPDSLQPPFCPYPAPYN--LSSTPVSTSLNGHHPSKPPFKTEDQVLQECRLRSVVTASETAEPQAALHLAIHFELHHKHLARQQFGKHQDAVTQFCHAYDYYLAAAKLGSVPALVHVARLQSRALHFHWQYVEIS-PTPTVESVLALLLAAAFQGSVQAFQALPRVMDDGVFNALKPFEPSLDTRAAKSGRSFAEQNCVIERELFNVTYRVALDLRVGTKHLPQREDLAVALLHIAHRRRHSRSSLELGLYMVQTARSFEEARAGMDILSKLTN------TDAHEGLQACFRLGRWLYYGLPHEFACSNGRITASTQHSNRQQGRQRQENMDHDQATCLVKTAAEGGLREAMVLYGTLL-KKWAARHPDQGYLDEGNYWIKKAGTCPMAYYAKALLLIYEAESSFKPRCKMTGAESFGS--------TTSGXXXXXXXXXXXXXXXXTPSRIGSKKSKKRGEKKKLLKWLQNSSSG--ALEVIEKPNRSTL-SAETLTQDASQIEDNAMNKAIQKKFEKVYNILVDGPAALAKDFPGENLNPYPYYKAAEFMIGFGYIWADCDPSKTEAGLKEEARILLKKVTE-IPRSHDPTTWEHLRRNWRQEDMFYVRKARDLETKM 632

The following BLAST results are available for this feature:

BLAST of Ggra1866.t2 vs. uniprot

BLAST of Ggra1866.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IPL7	7.600e-67	32.67	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 74..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 769..789
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 730..747
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 730..799
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 438..687
IPR006597	Sel1-like repeat	SMART	SM00671	sel1	coord: 543..579 e-value: 42.0 score: 8.2 coord: 625..666 e-value: 0.38 score: 19.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 377..732 e-value: 1.4E-18 score: 68.6

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000907_pilon	contig	tig00000907_pilon:38838..41591 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1866.t2	Ggra1866.t2	Gracilaria gracilis GNS1m male	mRNA	tig00000907_pilon 38838..41591 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra1866.t2 ID=Ggra1866.t2|Name=Ggra1866.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=918bp
MHDNDPDAHNSTTEKLARMLPSEELLHQHRFLIPDAEARSQVSLMEHTIR
MFLRKDRYSELLDTAACYQSHEVTDRILHNVAQLRNEIRAMRQENNVSRY
IPHCLNTDGAQALRCEPHIRILGLDSNHERVSKPIHQLDQRLGAIPCWGT
SPQSPPLFANEHNLSTRFRILMDVATAFTVAHQAGWYHGRLCPDMIRIMQ
LRTPQKTTSTESIESFPSAIVLHFADRQNGIGCRACEYCCSREKEVKRTN
HRESSNLNSMDFSFRHRPQSELISILPEAEDRYIFGNLVCWLYSAQCFDY
NEPNCQHNYDLLQHVPWPLRMIVTDAPDLEMPAIQLWLDQLDKKHIDPFS
DQPLCTIPSRHSSILSSSPNRVNDFNEADEAAKSKEEAIFECSIRAATAA
AKGEEPLAVLHLGLLFELRFRNLSQKFAMQAPMAAKALRDAYDYYAVAAE
LQNTSALHHIARLLYQAWYDRKATLPALSQSQILSLLLESAIRQNFGAYR
ALETVCEHGIRVAMETSSPDKNIKRLGSVSHEGSSSVVDSDLMNVMYRMG
LVLRRGDNDIHIDDKLAVGCFFIARNLGHLGASLELGLFLVERAVSLDEV
RQGIDMLQTLANWPLGGNTGSVESLEACFRLGRWCLLGLPHDFGRPDMKN
KLMAIRYLKPAAEQNHKEAMVQYGMLHERKIIPNGNTEGHDALEWISKAG
DCPSAFSALATLEWRKAVRNWNLQTRRALNTSFGSGSAPSGDDATTGETQ
QARRRKPPFFRKRGPGSKGSDQRSQSSSSSGSLTDSSSHDEALPELRRQT
ARILRTAEKMFQRSQQPNDLYPEKQYDPLPLYKLGYFYNNVKDIWGICDP
NVRAADLEQKARSLLSKAIERTSSSYEGIKWKRNRRNWILEDQAVVREAE
SLFQKLVEPVKLSGRGH*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006597	Sel1-like
IPR011990	TPR-like_helical_dom_sf