Ggra1864.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1864.t1
Unique NameGgra1864.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length492
Homology
BLAST of Ggra1864.t1 vs. uniprot
Match: A0A2V3ICZ7 (Apoptotic protease-activating factor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICZ7_9FLOR)

HSP 1 Score: 185 bits (469), Expect = 9.230e-47
Identity = 103/260 (39.62%), Postives = 147/260 (56.54%), Query Frame = 0
Query:   11 NTIEALECVKEAVKLAAPYVGRNGREIWFQLYGRLIERKEVYRIGEYLKEITLHAEKPWVRPGARYLSPSGGPLRGIRNMRGGA---VTCAWFGTDGSVFIIHARHVAEVKVWRVY-----GDERWKCIWTIETSEVVFDCTVSDNGSKLSIYLSNGSVEVWDVMQKKRLKCEKRLSHGKGAGVFSADGNLLALRQKRKNIAIWRTDYEKMEPVCQLRNKSRVRGVCWSGDGRSVAVACGNGFFFLWNVNSRSMMNSFPV 262
            +T+EAL+ VK+AV LA PYV RNG+E+WFQLYGRLIE + V  I +YL+ I ++AEKPW+R     L  +GG L       G         +F  D SV  I  +  A   V+ V      G+ +  C+W I+T   +    V + GSKL +   +G VEVWDV  K RL C +   +    G FS+ G L A      N+ IW  D E ++ +C L+N++ V  +C+SGD ++VAV C +G   +W++ SR ++NSF V
Sbjct:  714 STLEALKLVKDAVALAVPYVIRNGKEVWFQLYGRLIESQHVSAISKYLEGIEMYAEKPWLRASPGCLVQAGGVLERTWIPAGDQRWKTQHVFFSKDNSVCCIREKSDALGVVYEVQKLDETGEAKPTCMWRIQTKNCIQKSVVCNRGSKLGVVTHDGCVEVWDVENKVRLNCGEHQQNVTHVGQFSSSGVLWAFVTAHTNVRIWTIDGEDVQELCVLQNENPVSCLCFSGDCKAVAVGCSDGLVVMWDLRSRLVINSFYV 973          
BLAST of Ggra1864.t1 vs. uniprot
Match: A0A2V3IUA7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUA7_9FLOR)

HSP 1 Score: 114 bits (285), Expect = 1.210e-23
Identity = 62/170 (36.47%), Postives = 94/170 (55.29%), Query Frame = 0
Query:   14 EALECVKEAVKLAAPYVGRNGREIWFQLYGRLIERKEVYRIGEYLKEITLHAEKPWVRPGARYLSPSGGPLRGIRNMRGGA--VTCAWFGTDGSVFIIHARHVAEVKVWRVY-----GDERWKCIWTIETSEVVFDCTVSDNGSKLSIYLSNGSVEVWDVMQKKRLKCEK 176
            EALE + +A+ LAAPYV RN REIWFQLYGRL++R+ +   G YL++I  HAE+ W+R   + ++ +GG + G+  M      V   W G D  V +      AE +V+ ++        + K IW +           SDNG KL + + +G +++WD    K+L CE+
Sbjct:  308 EALELISDAITLAAPYVVRNEREIWFQLYGRLLQRESIVLDG-YLEKIRRHAERSWLRAAGKCMTQAGGLITGLWAMDRAKFLVLDVWVGQDDWVLVFGKIKHAESEVYEMWRLEKRSQSKQKRIWFVTIRGKAMQSFASDNGRKLGLVVGDGRLQLWDTENDKQLGCEQ 476          
BLAST of Ggra1864.t1 vs. uniprot
Match: A0A2V3ITH8 (NB-ARC domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITH8_9FLOR)

HSP 1 Score: 73.2 bits (178), Expect = 6.670e-10
Identity = 78/332 (23.49%), Postives = 129/332 (38.86%), Query Frame = 0
Query:   13 IEALECVKEAVKLAAPYVGRNGREIWFQLYGRLIERKEVYR-IGEYLKEITLHAEKPWVRPGARYLSPSGG------PLRGIRNMRGGAVTCAWFGTDGSVFIIHARHVAEVKVWRVYGDERWKCIWTIETSEVVFDCTVSDNGSKLSIYLSNGSVEVWDVMQKKRLKCEKRLSHGKGAGVFSADGNLLALRQKRKNIAIW--RTDYEKMEPVCQLRNKSRVRGVCWSGDGRSVAVACGNGFFFLWNVNSRSMMNSFPVGKTKVWIHMAWSSKNMIATSYCKETCVRDVTGESVKLVFSTSERCF---SLKWSDDGLRLATGGALGMTIWKA 332
            I AL  +  A +L+A  V RN +E+W+QLYGRL+  KE    + +YL+ I  HA++PW++P    L   G       P+  + N+R  ++       D  + ++      E+++W+   D           SE V D +        + +    +V++                       FS DGNL A   K   + +W  R   +K E      N   +R   WS DG  +A A  N   ++W       +   P  K +    +A S       S   +   + V  ++  ++    E C+   S+ W  +   LA        IW A
Sbjct:  675 IRALRVILRAAQLSAHAVSRNQKEVWYQLYGRLVSFKEENSTLNDYLERIEEHAKRPWMKPSPGILQAPGCAITETLPIPPLNNIRDFSINR----DDTILAVLVENQGTELRLWKRRTD----------ASEKVADLS--------NPFQRPSAVDIVS---------------------FSKDGNLFATGHKNGYVVLWDSRDGKKKCELPFHDENYDILRQFSWSMDGERLA-ALTNVCIYVWETQRGERVGLLPGRKIQC---IALSPTGSRVISAIAKEYAQIVEVDNGLVLQEMKEYCWKTKSMHWLSESTILACAEVPTFMIWNA 959          
The following BLAST results are available for this feature:
BLAST of Ggra1864.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3ICZ79.230e-4739.62Apoptotic protease-activating factor 1 n=1 Tax=Gra... [more]
A0A2V3IUA71.210e-2336.47Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ITH86.670e-1023.49NB-ARC domain-containing protein n=1 Tax=Gracilari... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 293..331
e-value: 2.1
score: 14.9
coord: 339..374
e-value: 53.0
score: 6.1
coord: 212..250
e-value: 0.0022
score: 27.2
coord: 127..165
e-value: 2.8
score: 14.2
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 188..275
e-value: 4.5E-10
score: 39.7
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 184..291
e-value: 5.4E-11
score: 44.3
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 296..490
e-value: 2.0E-12
score: 48.7
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 79..183
e-value: 7.5E-6
score: 26.9
NoneNo IPR availablePANTHERPTHR15622:SF2SUBFAMILY NOT NAMEDcoord: 100..282
NoneNo IPR availablePANTHERPTHR15622WD40 REPEAT PROTEINcoord: 293..461
NoneNo IPR availablePANTHERPTHR15622WD40 REPEAT PROTEINcoord: 100..282
NoneNo IPR availablePANTHERPTHR15622:SF2SUBFAMILY NOT NAMEDcoord: 293..461
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 93..407

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000907_piloncontigtig00000907_pilon:27754..29229 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1864.t1Ggra1864.t1Gracilaria gracilis GNS1m malemRNAtig00000907_pilon 27754..29229 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1864.t1 ID=Ggra1864.t1|Name=Ggra1864.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=492bp
MEEAYRTKILNTIEALECVKEAVKLAAPYVGRNGREIWFQLYGRLIERKE
VYRIGEYLKEITLHAEKPWVRPGARYLSPSGGPLRGIRNMRGGAVTCAWF
GTDGSVFIIHARHVAEVKVWRVYGDERWKCIWTIETSEVVFDCTVSDNGS
KLSIYLSNGSVEVWDVMQKKRLKCEKRLSHGKGAGVFSADGNLLALRQKR
KNIAIWRTDYEKMEPVCQLRNKSRVRGVCWSGDGRSVAVACGNGFFFLWN
VNSRSMMNSFPVGKTKVWIHMAWSSKNMIATSYCKETCVRDVTGESVKLV
FSTSERCFSLKWSDDGLRLATGGALGMTIWKADEASQMKKKKYGNFKSIY
EVRWSRDGKRLAAICCLGAVRVVQVSPTLEYGNSKEHWRFVRWCESGTML
SSLCDDGLGLWSSNGKREAKGRLLCAENGKNRRGHAVDLAWAAEGEVLAA
VFEHEVQLWKTSLHKQELISVLSAPCGRKLCTAALNVDVRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR024977Apc4_WD40_dom
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf