Ggra1862.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1862.t1
Unique NameGgra1862.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length112
Homology
BLAST of Ggra1862.t1 vs. uniprot
Match: Q7XY47 (Thioredoxin n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY47_GRIJA)

HSP 1 Score: 105 bits (261), Expect = 1.400e-26
Identity = 50/114 (43.86%), Postives = 75/114 (65.79%), Query Frame = 0
Query:    1 MVQEIVEATEFESATKEAAIVVVDFYAVWCGPCRFISPIIEDMESELKTSHP---GKTLFYKVDVDKNVELSEKMGITAMPSFQVYFNGELHHTVIGANHEQLRKTVNELLEKL 111
            MV+ I    +F++A   + +VV DFYA WCGPCRFI+P I+ ++  L        GK  FYKV+VD+N  L+ KM ++AMP+F +Y+NG +  T++GAN  +L+  V + L+KL
Sbjct:    1 MVKHIDVEQDFDAAINASPVVVFDFYADWCGPCRFIAPEIQKLDEHLNADTADTKGKVAFYKVNVDQNQALAVKMDVSAMPTFIIYYNGSVVSTIVGANFPKLKHAVTDYLDKL 114          
BLAST of Ggra1862.t1 vs. uniprot
Match: M2Y6C1 (Thioredoxin n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y6C1_GALSU)

HSP 1 Score: 98.6 bits (244), Expect = 1.510e-24
Identity = 44/106 (41.51%), Postives = 73/106 (68.87%), Query Frame = 0
Query:    1 MVQEIVEATEFESATKEAAIVVVDFYAVWCGPCRFISPIIEDMESELKTSHPGKTLFYKVDVDKNVELSEKMGITAMPSFQVYFNGELHHTVIGANHEQLRKTVNE 106
            +V+E+   T+F+ A +   +VV+DFYA WCGPCR ISP +E++ S+   +  G  LFYKVDVDK  ++++++GITAMP+F  Y  G+    ++GA+ ++L+  + +
Sbjct:    2 VVKELTSKTDFDHAIQADKLVVIDFYATWCGPCRMISPYLEELSSDATLNEKG-VLFYKVDVDKLADVAQEVGITAMPTFICYRKGKKVEELVGASKDRLKHMIEK 106          
BLAST of Ggra1862.t1 vs. uniprot
Match: A0A1D2VPK0 (Thioredoxin n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VPK0_9ASCO)

HSP 1 Score: 97.1 bits (240), Expect = 5.300e-24
Identity = 48/106 (45.28%), Postives = 72/106 (67.92%), Query Frame = 0
Query:    1 MVQEIVEATEFESATKEAAIVVVDFYAVWCGPCRFISPIIEDMESELKTSHPGKTLFYKVDVDKNVELSEKMGITAMPSFQVYFNGELHHTVIGANHEQLRKTVNE 106
            MVQ +   T+FE+A K   +VVVDF+A WCGPC+ I+PI+E    +L   H G + FYKVDVD   ++S    ITAMP+ + + +G+L  TV+GAN +++++T+ E
Sbjct:    1 MVQTLTSKTDFEAAIKSEKLVVVDFFATWCGPCKMIAPILE----KLSEKHTGVS-FYKVDVDAVPDVSHDQDITAMPTLKFFKDGKLIKTVVGANIQEIQRTIVE 101          
BLAST of Ggra1862.t1 vs. uniprot
Match: A0A177T472 (Thioredoxin n=2 Tax=Tilletia TaxID=13289 RepID=A0A177T472_9BASI)

HSP 1 Score: 92.8 bits (229), Expect = 2.840e-22
Identity = 44/101 (43.56%), Postives = 68/101 (67.33%), Query Frame = 0
Query:    9 TEFESATKEAAIVVVDFYAVWCGPCRFISPIIEDMESELKTSHPGKTLFYKVDVDKNVELSEKMGITAMPSFQVYFNGELHHTVIGANHEQLRKTVNELLE 109
            +EF+SA K+  +V++DF+A WCGPCR ISPI E    +L   H  K  F+KVDVD   ++S+++GI AMP+F ++ NGE    V+GA   +L+  +++ +E
Sbjct:   10 SEFQSAIKDNKVVLIDFWAEWCGPCRMISPIFE----KLAEQHGEKVKFFKVDVDAAPDVSQELGIKAMPTFLLFVNGEKAGEVVGAVPAKLQTLISQAVE 106          
BLAST of Ggra1862.t1 vs. uniprot
Match: LECA THIOREDOXIN n=1 Tax=synthetic construct TaxID=32630 RepID=UPI00038A5F66 (LECA THIOREDOXIN n=1 Tax=synthetic construct TaxID=32630 RepID=UPI00038A5F66)

HSP 1 Score: 92.4 bits (228), Expect = 3.810e-22
Identity = 44/105 (41.90%), Postives = 70/105 (66.67%), Query Frame = 0
Query:    1 MVQEIVEATEFESATKEA-AIVVVDFYAVWCGPCRFISPIIEDMESELKTSHPGKTLFYKVDVDKNVELSEKMGITAMPSFQVYFNGELHHTVIGANHEQLRKTV 104
            MV ++    EFE+   EA  +VVVDF+A WCGPC+ I+P  E++  E    +P K +F KVDVD+  +++ K GIT+MP+F+ + NG+    ++GAN E+L++ +
Sbjct:    1 MVIQVTNKEEFEAILSEADKLVVVDFFATWCGPCKMIAPFFEELSEE----YPDKVVFIKVDVDEVPDVAAKYGITSMPTFKFFKNGKKVDELVGANQEKLKQMI 101          
BLAST of Ggra1862.t1 vs. uniprot
Match: A0A6P5A7E7 (Thioredoxin n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5A7E7_BRABE)

HSP 1 Score: 92.0 bits (227), Expect = 4.970e-22
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 0
Query:   10 EFESATKEAAIVVVDFYAVWCGPCRFISPIIEDMESELKTSHPGKTLFYKVDVDKNVELSEKMGITAMPSFQVYFNGELHHTVIGANHEQLRKTVNELLEKL 111
            EFE+   E A VVVDF AVWCGPC+ I P  +DME E  T       F KVDVD+N E++ + G++AMP+F+ Y NG+    V+GA+  +LR    E++EK+
Sbjct:   10 EFEALLNENATVVVDFTAVWCGPCKTIGPKFDDMEKEFPTIK-----FAKVDVDQNSEVAMEQGVSAMPTFKCYVNGQKVDEVVGADEAKLR----EMIEKV 102          
BLAST of Ggra1862.t1 vs. uniprot
Match: thioredoxin-like n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI00189A1683 (thioredoxin-like n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI00189A1683)

HSP 1 Score: 92.8 bits (229), Expect = 7.540e-22
Identity = 50/109 (45.87%), Postives = 62/109 (56.88%), Query Frame = 0
Query:    1 MVQEIVEATEFESATKEAA--IVVVDFYAVWCGPCRFISPIIEDMESELKTSHPGKTLFYKVDVDKNVELSEKMGITAMPSFQVYFNGELHHTVIGANHEQLRKTVNEL 107
            MV+EI    EF++    A   +VVVDF A WCGPC+ I P+ E    EL   H  K +F KVDVD+  ++S   GI  MP+F  Y NG+      GAN E LRK V EL
Sbjct:   39 MVREITSKAEFDAVLASAGDKLVVVDFTATWCGPCKMIGPVFE----ELSVQHKDKVIFIKVDVDEAADVSSDCGINCMPTFHFYKNGQKVFEFSGANQETLRKKVVEL 143          
BLAST of Ggra1862.t1 vs. uniprot
Match: A0A8B6HLR6 (Thioredoxin n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6HLR6_MYTGA)

HSP 1 Score: 90.9 bits (224), Expect = 1.630e-21
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 0
Query:    5 IVEATEFESATK-EAAIVVVDFYAVWCGPCRFISPIIEDMESELKTSHPGKTLFYKVDVDKNVELSEKMGITAMPSFQVYFNGELHHTVIGANHEQLRKTVNE 106
            +V   EFE+  K E+ ++VVDFYA WCGPC+ I+P +++M  E         +F KVDVD+  EL++  GI+AMP+FQ+Y  GE    + GAN E+L++ + E
Sbjct:    9 LVNQDEFEALKKKESRLLVVDFYATWCGPCKMIAPKLQEMAKEF-----SDVMFLKVDVDEEEELAQSCGISAMPTFQLYKGGEKVGEITGANAEKLKELIAE 106          
BLAST of Ggra1862.t1 vs. uniprot
Match: A0A8C6WUN3 (Thioredoxin n=2 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6WUN3_9GOBI)

HSP 1 Score: 90.5 bits (223), Expect = 2.130e-21
Identity = 50/109 (45.87%), Postives = 68/109 (62.39%), Query Frame = 0
Query:    1 MVQEIVEATEFESATKEAA--IVVVDFYAVWCGPCRFISPIIEDMESELKTSHPGKTLFYKVDVDKNVELSEKMGITAMPSFQVYFNGELHHTVIGANHEQLRKTVNEL 107
            MV+ +   ++FE   K A   +VVVDF A WCGPC+ I+P+ E M  E K       +F KVDVD+  ++SEK GI++MP+FQ Y NGE      GA+ E+LR TV +L
Sbjct:    1 MVKFVTSLSDFEEELKAAGSKLVVVDFTASWCGPCKMIAPVFEKMADENKD-----VVFLKVDVDEASDVSEKCGISSMPTFQFYKNGEKLEQFSGASEEKLRATVAKL 104          
BLAST of Ggra1862.t1 vs. uniprot
Match: thioredoxin n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI0018992F5B (thioredoxin n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI0018992F5B)

HSP 1 Score: 90.5 bits (223), Expect = 2.180e-21
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 0
Query:    1 MVQEIVEATEFES--ATKEAAIVVVDFYAVWCGPCRFISPIIEDMESELKTSHPGKTLFYKVDVDKNVELSEKMGITAMPSFQVYFNGELHHTVIGANHEQLRKTVNEL 107
            MV+ I    EF++  AT    +VVVDF A WCGPC+ I+P+ E    EL   + G+ +F KVDVD+  +L ++ GI +MP+FQ Y NG+  H   GAN  +L + V+EL
Sbjct:    1 MVKLINSMAEFDNELATAGGKLVVVDFTATWCGPCKMIAPVFE----ELSIRYKGQVIFLKVDVDEVADLCQQCGIRSMPTFQFYKNGKKVHEFSGANQSKLHQKVDEL 105          
The following BLAST results are available for this feature:
BLAST of Ggra1862.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q7XY471.400e-2643.86Thioredoxin n=1 Tax=Griffithsia japonica TaxID=832... [more]
M2Y6C11.510e-2441.51Thioredoxin n=1 Tax=Galdieria sulphuraria TaxID=13... [more]
A0A1D2VPK05.300e-2445.28Thioredoxin n=1 Tax=Ascoidea rubescens DSM 1968 Ta... [more]
A0A177T4722.840e-2243.56Thioredoxin n=2 Tax=Tilletia TaxID=13289 RepID=A0A... [more]
LECA THIOREDOXIN n=1 Tax=synthetic construct TaxID=32630 RepID=UPI00038A5F663.810e-2241.90LECA THIOREDOXIN n=1 Tax=synthetic construct TaxID... [more]
A0A6P5A7E74.970e-2247.06Thioredoxin n=1 Tax=Branchiostoma belcheri TaxID=7... [more]
thioredoxin-like n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI00189A16837.540e-2245.87thioredoxin-like n=1 Tax=Nematolebias whitei TaxID... [more]
A0A8B6HLR61.630e-2143.69Thioredoxin n=2 Tax=Mytilus galloprovincialis TaxI... [more]
A0A8C6WUN32.130e-2145.87Thioredoxin n=2 Tax=Neogobius melanostomus TaxID=4... [more]
thioredoxin n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI0018992F5B2.180e-2144.04thioredoxin n=1 Tax=Nematolebias whitei TaxID=4517... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00421THIOREDOXINcoord: 73..84
score: 21.76
coord: 21..29
score: 60.37
coord: 29..38
score: 59.94
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 1..110
e-value: 2.6E-29
score: 103.3
NoneNo IPR availablePANTHERPTHR46115THIOREDOXIN-LIKE PROTEIN 1coord: 1..109
NoneNo IPR availableCDDcd02947TRX_familycoord: 10..105
e-value: 1.15821E-29
score: 100.325
IPR005746ThioredoxinPIRSFPIRSF000077Thioredoxincoord: 1..108
e-value: 7.9E-27
score: 91.3
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 5..105
e-value: 8.5E-24
score: 83.5
IPR013766Thioredoxin domainPROSITEPS51352THIOREDOXIN_2coord: 2..109
score: 11.542143
IPR017937Thioredoxin, conserved sitePROSITEPS00194THIOREDOXIN_1coord: 22..40
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 2..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:974693..975108 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1862.t1Ggra1862.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 974693..975108 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1862.t1 ID=Ggra1862.t1|Name=Ggra1862.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=112bp
MVQEIVEATEFESATKEAAIVVVDFYAVWCGPCRFISPIIEDMESELKTS
HPGKTLFYKVDVDKNVELSEKMGITAMPSFQVYFNGELHHTVIGANHEQL
RKTVNELLEKL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
IPR017937Thioredoxin_CS
IPR036249Thioredoxin-like_sf