Ggra1838.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1838.t1
Unique NameGgra1838.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length215
Homology
BLAST of Ggra1838.t1 vs. uniprot
Match: A0A2V3IU08 (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU08_9FLOR)

HSP 1 Score: 353 bits (905), Expect = 6.780e-122
Identity = 173/214 (80.84%), Postives = 189/214 (88.32%), Query Frame = 0
Query:    1 MTQNDETLEDEINRLLQTNRYDPVILPRLEEFVNYQVSNGFCDSDANLATLKLYQFYPAKYNPTIVAKVLIKALMSLPATDFLACLYLIPERCQVDEPIPVITQLADLLERGEFNMFWDASGACRDLLDSVPGSFAAVREFMTDVVSRTYHTIQLPALCQILNLEADQVQAHVTSRGWTIKNDTITIPPNEDNQPKPPSMDEQLSFAQVASNML 214
            M QN ETLEDEINRLLQTNRYDP ILPRLEEF+ YQ SN FCDSDANLATLKLYQFYPAKYNP IVAK+LIKALMS PA+DFLACLYLIPER QVDEPIPVITQLADLL+RGEF  FWDASGACRDLL+ +PGS  AVR+FMTDVVSRTYHTI    L +IL+L A+ V+AHVTSRGW +++D ITIP NEDNQP+PP+MDEQLSF QVASNML
Sbjct:    1 MAQNGETLEDEINRLLQTNRYDPAILPRLEEFIEYQASNDFCDSDANLATLKLYQFYPAKYNPPIVAKILIKALMSFPASDFLACLYLIPERRQVDEPIPVITQLADLLDRGEFKQFWDASGACRDLLEGIPGSITAVRDFMTDVVSRTYHTITTSVLGEILDLSAEDVKAHVTSRGWVVQDDVITIPLNEDNQPRPPTMDEQLSFKQVASNML 214          
BLAST of Ggra1838.t1 vs. uniprot
Match: R7QDP0 (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDP0_CHOCR)

HSP 1 Score: 261 bits (667), Expect = 1.260e-85
Identity = 129/207 (62.32%), Postives = 157/207 (75.85%), Query Frame = 0
Query:    8 LEDEINRLLQTNRYDPVILPRLEEFVNYQVSNGFCDSDANLATLKLYQFYPAKYNPTIVAKVLIKALMSLPATDFLACLYLIPERCQVDEPIPVITQLADLLERGEFNMFWDASGACRDLLDSVPGSFAAVREFMTDVVSRTYHTIQLPALCQILNLEADQVQAHVTSRGWTIKNDTITIPPNEDNQPKPPSMDEQLSFAQVASNML 214
            L+ E+  LLQ++RYDP ILPRLEEFVN QV++ FCD + NLA LKLYQF+P  YN + V+K+LIKALM+LP +DFL  LYLIPER Q+DEPIPVI+ LA LLE G F  FW ASG+C  LL SVPGS  AVR+FM DVVSRTY +I +P L +ILNL+   V A   +RGW + N T+T P  E+NQP+PP++DE LSF QVAS ML
Sbjct:   11 LDKEVMELLQSHRYDPTILPRLEEFVNCQVTHNFCDPETNLAVLKLYQFHPETYNASTVSKILIKALMNLPTSDFLCSLYLIPERRQIDEPIPVISHLAQLLETGRFTDFWAASGSCAQLLASVPGSLDAVRDFMMDVVSRTYKSIDVPILAEILNLDEPGVVAAANARGWNLANGTVTCPSTEENQPRPPTLDEHLSFRQVASKML 217          
BLAST of Ggra1838.t1 vs. uniprot
Match: A0A1X6NQY4 (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQY4_PORUM)

HSP 1 Score: 196 bits (498), Expect = 7.610e-60
Identity = 107/215 (49.77%), Postives = 137/215 (63.72%), Query Frame = 0
Query:    8 LEDEINRLLQTNRYDPVILPRLEEFVNYQVSNGFCDSDANLATLKLYQFYPAKYNPTIVAKVLIKALMSLPATDFLACLYLIPERCQVDEPIPVITQLADLLERGEFNMFWDASGACRDLLDSVPGSFAAVREFMTDVVSRTYHTIQLPALCQILNLEADQVQAH-------VTSRGWTIKND-TITIPPNEDNQPKPPSMDEQLSFAQVASNML 214
            LED++  LLQ+ RYDP ILP LEE+V  QV+ G  D+ ANLATLKLYQFYPA Y   +V+K+LIKA+M+LP+TDFL  +YLIP     DEPIP + QLA +LE G F  FW A+GA R LLD VPG   AVR FM  V+ RTY  ++   L ++L LE     A        + S GW    +  I +P N +N+ +  ++ EQL+F QVA  ML
Sbjct:   10 LEDKVMTLLQSQRYDPDILPTLEEYVEQQVATGTNDAMANLATLKLYQFYPATYKTAVVSKILIKAIMALPSTDFLCAMYLIPAATADDEPIPALVQLASMLETGRFEDFWPATGAVRQLLDGVPGFDEAVRSFMLVVIGRTYKRVERTVLARLLGLEGVDEAAEEAAVDEVIKSVGWKAGGEGMIVVPGNGENEERAKTVGEQLTFRQVAVKML 224          
BLAST of Ggra1838.t1 vs. uniprot
Match: M2W355 (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W355_GALSU)

HSP 1 Score: 171 bits (434), Expect = 2.640e-50
Identity = 92/209 (44.02%), Postives = 130/209 (62.20%), Query Frame = 0
Query:    6 ETLEDEINRLLQTNRYDPVILPRLEEFVNYQVSNGFCDSDANLATLKLYQFYPAKYNPTIVAKVLIKALMSLPATDFLACLYLIPERCQVDEPIPVITQLADLLERGEFNMFWDASGACRDLLDSVPGSFAAVREFMTDVVSRTYHTIQLPALCQILNLEADQVQAHVTSRGWT-IKNDTITIPPNEDNQPKPPSMDEQLSFAQVASNM 213
            E L  ++N LLQ+ RYDP IL  LE +V  Q   G  D DANLA LKLYQFYP K N +IV+K+L+KAL +LP++DF++CLYL+ E+ Q + P+  +   AD LE G F  FW++    +D++  +PG   + REFM  V+SRTY  I L  L ++L L  D +   +   G T I ND +  P  E+NQP+P ++ EQL   +V  ++
Sbjct:    2 EELSQQVNDLLQSRRYDPDILIDLERYVEAQCLEGAYDGDANLACLKLYQFYPEKTNFSIVSKILLKALAALPSSDFISCLYLLGEKTQREVPVATVISWADALESGNFVDFWNSLQNNKDIIKGLPGIEDSFREFMLAVISRTYFRIHLSVLQKLLCLSQDDLIRFLNKHGMTNITNDILQFPSTEENQPRPKTIGEQLPLRKVLESL 210          
BLAST of Ggra1838.t1 vs. uniprot
Match: A0A5J4YQF4 (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQF4_PORPP)

HSP 1 Score: 166 bits (419), Expect = 5.960e-48
Identity = 85/209 (40.67%), Postives = 128/209 (61.24%), Query Frame = 0
Query:    5 DETLEDEINRLLQTNRYDPVILPRLEEFVNYQVSNGFCDSDANLATLKLYQFYPAKYNPTIVAKVLIKALMSLPATDFLACLYLIPERCQVDEPIPVITQLADLLERGEFNMFWDASGACRDLLDSVPGSFAAVREFMTDVVSRTYHTIQLPALCQILNLEADQVQAHVTSRGWTIKNDTITIPPNEDNQPKPPS-MDEQLSFAQVASN 212
            D  +E+++  +L   RY+P I+PRLEE+V++Q+     D DAN+  LKLYQF+P K N   + +++ KA+++LPA DFL+ LYL+P++    EP+  + +L  LLE   F +FW        L  ++ G   AVR F+ DVV+RTY +I+L  L Q+LN   +   + V   GW ++ D  TIPPN +N  KP +   EQL FA +AS+
Sbjct:   12 DMLVEEQVANMLLHQRYNPAIIPRLEEYVDHQLQKEKYDYDANMGLLKLYQFHPEKSNSKKIVQIMAKAMLALPAQDFLSGLYLVPQQSLSQEPMATLVELVSLLETCMFELFWQRLAGIDSLRKTIVGFDDAVRRFILDVVARTYSSIRLDLLGQLLNASTEDTTSAVLKFGWAVEGDVATIPPNTENTAKPSNDRGEQLGFAVIASS 220          
BLAST of Ggra1838.t1 vs. uniprot
Match: A0A7S4N835 (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4N835_9EUKA)

HSP 1 Score: 160 bits (406), Expect = 6.270e-46
Identity = 89/188 (47.34%), Postives = 119/188 (63.30%), Query Frame = 0
Query:   15 LLQTNRYDPVILPRLEEFVNYQVSNGFCDSDANLATLKLYQFYPAKYNPTIVAKVLIKALMSLPATDFLACLYLIPERCQVDEPIPVITQLADLLERGEFNMFWDASGACRDLLDSVPGSFAAVREFMTDVVSRTYHTIQLPALCQILNLEADQ-VQAHVTSRGWTIKNDTITIPPNEDNQPKPPSMD 201
            LL+ +RYDP ILP+LEE+VN Q ++   + D NLATLKLYQF+  K NP IVAK+L+KALM+LP TD+L C+YL+PE  Q  E I  I+ +A LLE   F   W + G+  +LL +VPG   A+REFM   +  TY  +      + L L+ D  +QA V ++GWT +   I I PN DN  KP  +D
Sbjct:   23 LLEKSRYDPEILPQLEEYVNTQCASNTYNLDCNLATLKLYQFHTEKSNPEIVAKILVKALMNLPNTDYLLCMYLVPESVQELEQIKNISAVAQLLEGCSFRAVWGSLGSLSELLAAVPGFDDAIREFMLTTLQITYQAVPDAHAKESLGLKDDAALQALVAAKGWTREGGAIHISPNPDNTAKPKKVD 210          
BLAST of Ggra1838.t1 vs. uniprot
Match: A0A7S0ZJ83 (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZJ83_9RHOD)

HSP 1 Score: 150 bits (378), Expect = 2.380e-42
Identity = 79/163 (48.47%), Postives = 104/163 (63.80%), Query Frame = 0
Query:    8 LEDEINRLLQTNRYDPVILPRLEEFVNYQVSNGFCDSDANLATLKLYQFYPAKYNPTIVAKVLIKALMSLPATDFLACLYLIPERCQVDEPIPVITQLADLLERGEFNMFWDASGACRDLLDSVPGSFAAVREFMTDVVSRTYHTIQLPALCQILNLEADQVQ 170
            LE E+  LLQ+ RYDP ILPRLE +V +QV+    DSDAN+A LKLYQFYP +Y    V  +L K++M+LP TDFL   Y+IP   Q ++PIP +  L + LE G F  FW+ + A   L  SV G   AVR  M DV++RTY  I +  L +++NL  DQV+
Sbjct:   14 LEREVVHLLQSRRYDPDILPRLEAYVEFQVNENKYDSDANMAVLKLYQFYPERYKKQTVVNILAKSIMALPETDFLCGSYMIPLGAQKEQPIPTLLALVNELETGHFERFWEKAEAIDALRHSVVGFDDAVRVLMLDVIARTYCRIDVVLLSKLINLSVDQVK 176          
BLAST of Ggra1838.t1 vs. uniprot
Match: A0A2R6WMX4 (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WMX4_MARPO)

HSP 1 Score: 150 bits (378), Expect = 9.640e-42
Identity = 76/193 (39.38%), Postives = 114/193 (59.07%), Query Frame = 0
Query:   12 INRLLQTNRYDPVILPRLEEFVNYQVSNGFCDSDANLATLKLYQFYPAKYNPTIVAKVLIKALMSLPATDFLACLYLIPERCQVDEPIPVITQLADLLERGEFNMFWDASGACRDLLDSVPGSFAAVREFMTDVVSRTYHTIQLPALCQILNLEADQVQAHV----TSRGWTIKN-----DTITIPPNEDNQP 195
            +  L+Q N Y+P ILP LE +V  QVS      DANL  L+LYQF PA+ N  ++ ++L+KALM+LPA DF  C++LIPER Q++EP   +  LA  LE   F  FWD +   RD+L+ VPG   A++++   V+S TY  +    L + +N+E   +  ++     + GW+++        + +PPNEDN P
Sbjct:   12 VEHLVQLNPYNPDILPDLESYVQEQVSQQTYSLDANLCLLRLYQFEPARLNVHVITRILVKALMALPAPDFNLCMFLIPERLQMEEPFLTLATLAHFLETARFREFWDEANRNRDILEVVPGFEQAIQDYAIHVLSLTYQKLPRQILAEAINVEGLSLDKYIEHQQVNNGWSLEKGHGGGQLVVLPPNEDNHP 204          
BLAST of Ggra1838.t1 vs. uniprot
Match: A0A7S4ULZ9 (Eukaryotic translation initiation factor 3 subunit K n=3 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4ULZ9_GUITH)

HSP 1 Score: 147 bits (372), Expect = 5.170e-41
Identity = 76/205 (37.07%), Postives = 121/205 (59.02%), Query Frame = 0
Query:    8 LEDEINRLLQTNRYDPVILPRLEEFVNYQVSNGFCDSDANLATLKLYQFYPAKYNPTIVAKVLIKALMSLPATDFLACLYLIPERCQVDEPIPVITQLADLLERGEFNMFWD--ASGACRDLLDSVPGSFAAVREFMTDVVSRTYHTIQLPALCQILNLEADQVQAHVTSRGWTIKNDTITIPPNEDNQPKPPSMDEQLSFAQVA 210
            +++E+ RLL   R+DP I P+LE +V+ Q+  G+ D DANLA L+ YQ+ PA  N  +V K+L+KALM +PATDF+ C+YL+P   + ++ I V+ QL+D LE  +F  +W   A      + + +PG   A+R+++  V+S TY  I    L  ++NL+  Q+   +  + W  K   + IP NE N+       + +SF Q+A
Sbjct:    1 MQEEVQRLLSERRFDPSITPQLEAYVDEQIKGGYTDLDANLALLRFYQYNPATANSEVVCKILVKALMQMPATDFMLCMYLVPGAVK-EQKIEVLKQLSDKLETCQFKEYWADMADEKNASVANGIPGFHEAIRQYIVGVISATYQVIARDELEILINLKGAQLDQLLEEKKWVAKGSDVQIPVNEFNEASVKFKQDGISFDQLA 204          
BLAST of Ggra1838.t1 vs. uniprot
Match: eukaryotic translation initiation factor 3 subunit K n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8CC80 (eukaryotic translation initiation factor 3 subunit K n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8CC80)

HSP 1 Score: 148 bits (373), Expect = 5.910e-41
Identity = 81/199 (40.70%), Postives = 119/199 (59.80%), Query Frame = 0
Query:    7 TLEDEINRLLQTNRYDPVILPRLEEFVNYQVSNGFCDSDANLATLKLYQFYPAKYNPTIVAKVLIKALMSLPATDFLACLYLIPERCQVDEPIPVITQLADLLERGEFNMFWDASGACRDLLDSVPGSFAAVREFMTDVVSRTYHTIQLPALCQILNLEA---DQVQAH-VTSRGWTI-----KNDTITIPPNEDNQPK 196
            T E  + +L+  N Y+P ILP LE +VN+QVS+     DANL  L+LYQF P + +  IVA++LIKALM++PA DF  CL+LIPER Q+D+P   +  L+  LE  +F  FWD +   R +LD VPG   A++E+   V+S +Y       + + +N E    D+   H VT+  WT+     K+  +++P NE N P+
Sbjct:   10 TTEITVEQLVAVNPYNPDILPDLENYVNHQVSSKTYSLDANLCLLRLYQFEPERMSSQIVARILIKALMAMPAPDFSLCLFLIPERVQMDQPFKTLILLSHYLETAKFRQFWDEAAKTRHILDVVPGFEQAIQEYAIHVLSLSYQKAPKSVIAEAINSEGPSLDKFLEHRVTNGDWTLEKGHGKSQLVSLPQNEFNHPE 208          
The following BLAST results are available for this feature:
BLAST of Ggra1838.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IU086.780e-12280.84Eukaryotic translation initiation factor 3 subunit... [more]
R7QDP01.260e-8562.32Eukaryotic translation initiation factor 3 subunit... [more]
A0A1X6NQY47.610e-6049.77Eukaryotic translation initiation factor 3 subunit... [more]
M2W3552.640e-5044.02Eukaryotic translation initiation factor 3 subunit... [more]
A0A5J4YQF45.960e-4840.67Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S4N8356.270e-4647.34Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S0ZJ832.380e-4248.47Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A2R6WMX49.640e-4239.38Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S4ULZ95.170e-4137.07Eukaryotic translation initiation factor 3 subunit... [more]
eukaryotic translation initiation factor 3 subunit K n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8CC805.910e-4140.70eukaryotic translation initiation factor 3 subunit... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016020Translation initiation factor 3, subunit 12, N-terminal, eukaryoticGENE3D1.25.40.250ARM repeat; domain 1coord: 3..120
e-value: 1.3E-36
score: 127.0
IPR033464CSN8/PSMD8/EIF3KPFAMPF10075CSN8_PSD8_EIF3Kcoord: 62..197
e-value: 6.0E-22
score: 78.2
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 124..214
e-value: 1.5E-18
score: 68.8
NoneNo IPR availablePANTHERPTHR13022:SF0EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Kcoord: 6..212
IPR009374Eukaryotic translation initiation factor 3 subunit KPANTHERPTHR13022EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11coord: 6..212
IPR009374Eukaryotic translation initiation factor 3 subunit KHAMAPMF_03010eIF3kcoord: 3..214
score: 20.800333
IPR000717Proteasome component (PCI) domainPROSITEPS50250PCIcoord: 42..203
score: 18.298515
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 11..129
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 135..211

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:839786..840430 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1838.t1Ggra1838.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 839786..840430 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1838.t1 ID=Ggra1838.t1|Name=Ggra1838.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=215bp
MTQNDETLEDEINRLLQTNRYDPVILPRLEEFVNYQVSNGFCDSDANLAT
LKLYQFYPAKYNPTIVAKVLIKALMSLPATDFLACLYLIPERCQVDEPIP
VITQLADLLERGEFNMFWDASGACRDLLDSVPGSFAAVREFMTDVVSRTY
HTIQLPALCQILNLEADQVQAHVTSRGWTIKNDTITIPPNEDNQPKPPSM
DEQLSFAQVASNML*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016020Transl_init_fac_sub12_N_euk
IPR033464CSN8_PSD8_EIF3K
IPR036388WH-like_DNA-bd_sf
IPR009374eIF3k
IPR000717PCI_dom
IPR016024ARM-type_fold
IPR036390WH_DNA-bd_sf