Ggra1838.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1838.t1
Unique NameGgra1838.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:839786..840430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706651.1
Preferred nameEIF3K
PFAMsCSN8_PSD8_EIF3K
Max annot lvl2759|Eukaryota
KEGG koko:K05699,ko:K13344,ko:K15028
KEGG TC3.A.20.1
KEGG Pathwayko04146,ko04510,ko04520,ko04530,ko04670,ko04810,ko05146,ko05203,ko05322,map04146,map04510,map04520,map04530,map04670,map04810,map05146,map05203,map05322
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:0071704,GO:1901564,GO:1901566,GO:1901576
Evalue1.84e-50
EggNOG OGsKOG3252@1|root,KOG3252@2759|Eukaryota
Descriptionribosome binding
COG categoryJ
BRITEko00000,ko00001,ko03012,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1838Ggra1838Gracilaria gracilis GNS1m malegenetig00000050_pilon 839786..840430 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1838.t1.stop1Ggra1838.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 839786..839788 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1838.t1.CDS1Ggra1838.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 839786..840430 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1838.t1.exon1Ggra1838.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 839786..840430 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1838.t1.start1Ggra1838.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 840428..840430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1838.t1Ggra1838.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 839786..840430 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1838.t1 ID=Ggra1838.t1|Name=Ggra1838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=215bp
MTQNDETLEDEINRLLQTNRYDPVILPRLEEFVNYQVSNGFCDSDANLAT
LKLYQFYPAKYNPTIVAKVLIKALMSLPATDFLACLYLIPERCQVDEPIP
VITQLADLLERGEFNMFWDASGACRDLLDSVPGSFAAVREFMTDVVSRTY
HTIQLPALCQILNLEADQVQAHVTSRGWTIKNDTITIPPNEDNQPKPPSM
DEQLSFAQVASNML*
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spliced messenger RNA

>Ggra1838.t1 ID=Ggra1838.t1|Name=Ggra1838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000050_pilon:839786..840430- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCAGAACGACGAGACGCTCGAGGACGAGATCAACCGTCTGCTACA
GACCAACCGCTACGACCCGGTAATCCTGCCGCGTCTGGAGGAGTTTGTCA
ACTATCAAGTATCCAATGGCTTTTGCGACTCCGATGCCAACCTAGCAACG
CTCAAGTTGTACCAGTTCTACCCCGCAAAGTACAACCCCACTATCGTCGC
AAAGGTCCTTATCAAGGCACTCATGTCGCTGCCAGCCACCGACTTCCTCG
CCTGTCTGTACCTCATTCCGGAGCGCTGTCAAGTAGATGAACCCATCCCC
GTCATCACGCAGCTGGCCGATTTGCTGGAACGCGGCGAGTTTAATATGTT
TTGGGATGCTTCTGGCGCTTGTCGCGACTTGTTGGATAGCGTGCCTGGCA
GTTTTGCCGCTGTGAGGGAGTTTATGACCGATGTTGTGTCCAGAACCTAT
CACACCATTCAGCTGCCTGCGCTCTGCCAAATCTTGAATCTTGAAGCCGA
TCAAGTGCAAGCGCACGTCACTTCGAGAGGCTGGACCATTAAGAACGATA
CCATCACCATTCCGCCTAATGAAGACAATCAACCAAAGCCACCGTCCATG
GATGAGCAACTCAGCTTTGCACAAGTGGCCTCCAATATGCTCTAG
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protein sequence of Ggra1838.t1

>Ggra1838.t1 ID=Ggra1838.t1|Name=Ggra1838.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=215bp
MTQNDETLEDEINRLLQTNRYDPVILPRLEEFVNYQVSNGFCDSDANLAT
LKLYQFYPAKYNPTIVAKVLIKALMSLPATDFLACLYLIPERCQVDEPIP
VITQLADLLERGEFNMFWDASGACRDLLDSVPGSFAAVREFMTDVVSRTY
HTIQLPALCQILNLEADQVQAHVTSRGWTIKNDTITIPPNEDNQPKPPSM
DEQLSFAQVASNML*
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mRNA from alignment at tig00000050_pilon:839786..840430-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1838.t1 ID=Ggra1838.t1|Name=Ggra1838.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000050_pilon:839786..840430- (Gracilaria gracilis GNS1m male)
ATGACTCAGAACGACGAGACGCTCGAGGACGAGATCAACCGTCTGCTACA
GACCAACCGCTACGACCCGGTAATCCTGCCGCGTCTGGAGGAGTTTGTCA
ACTATCAAGTATCCAATGGCTTTTGCGACTCCGATGCCAACCTAGCAACG
CTCAAGTTGTACCAGTTCTACCCCGCAAAGTACAACCCCACTATCGTCGC
AAAGGTCCTTATCAAGGCACTCATGTCGCTGCCAGCCACCGACTTCCTCG
CCTGTCTGTACCTCATTCCGGAGCGCTGTCAAGTAGATGAACCCATCCCC
GTCATCACGCAGCTGGCCGATTTGCTGGAACGCGGCGAGTTTAATATGTT
TTGGGATGCTTCTGGCGCTTGTCGCGACTTGTTGGATAGCGTGCCTGGCA
GTTTTGCCGCTGTGAGGGAGTTTATGACCGATGTTGTGTCCAGAACCTAT
CACACCATTCAGCTGCCTGCGCTCTGCCAAATCTTGAATCTTGAAGCCGA
TCAAGTGCAAGCGCACGTCACTTCGAGAGGCTGGACCATTAAGAACGATA
CCATCACCATTCCGCCTAATGAAGACAATCAACCAAAGCCACCGTCCATG
GATGAGCAACTCAGCTTTGCACAAGTGGCCTCCAATATGCTCTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:839786..840430-

>Ggra1838.t1 ID=Ggra1838.t1|Name=Ggra1838.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=645bp|location=Sequence derived from alignment at tig00000050_pilon:839786..840430- (Gracilaria gracilis GNS1m male)
ATGACTCAGAACGACGAGACGCTCGAGGACGAGATCAACCGTCTGCTACA
GACCAACCGCTACGACCCGGTAATCCTGCCGCGTCTGGAGGAGTTTGTCA
ACTATCAAGTATCCAATGGCTTTTGCGACTCCGATGCCAACCTAGCAACG
CTCAAGTTGTACCAGTTCTACCCCGCAAAGTACAACCCCACTATCGTCGC
AAAGGTCCTTATCAAGGCACTCATGTCGCTGCCAGCCACCGACTTCCTCG
CCTGTCTGTACCTCATTCCGGAGCGCTGTCAAGTAGATGAACCCATCCCC
GTCATCACGCAGCTGGCCGATTTGCTGGAACGCGGCGAGTTTAATATGTT
TTGGGATGCTTCTGGCGCTTGTCGCGACTTGTTGGATAGCGTGCCTGGCA
GTTTTGCCGCTGTGAGGGAGTTTATGACCGATGTTGTGTCCAGAACCTAT
CACACCATTCAGCTGCCTGCGCTCTGCCAAATCTTGAATCTTGAAGCCGA
TCAAGTGCAAGCGCACGTCACTTCGAGAGGCTGGACCATTAAGAACGATA
CCATCACCATTCCGCCTAATGAAGACAATCAACCAAAGCCACCGTCCATG
GATGAGCAACTCAGCTTTGCACAAGTGGCCTCCAATATGCTCTAG
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