Ggra1806.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1806.t1
Unique NameGgra1806.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length205
Homology
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BLAST of Ggra1806.t1 vs. uniprot
Match: A0A2V3IWM3 (Mitochondrial import inner membrane translocase subunit TIM22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWM3_9FLOR)

HSP 1 Score: 217 bits (552), Expect = 2.520e-68
Identity = 119/206 (57.77%), Postives = 143/206 (69.42%), Query Frame = 0 
Query:    1 MQTCRSCTHAFPPLFPPSAASHPHPASSSPSDPPALLRAAFSSHAPAQSHSPPGLTAALHDGQPPQL---LATAYRQPLPSCISMAVAHGVRGAAIGSVFGGAMALSTAVSSRYPRDVVLSHTANGAFRNAAAFASWTSLFALSRCTLVRTRRRDDLFNPLVAGAFTGAVLTLVSVRGHWRLYQSQILTNAGASAMIAVVFDSINR 203
            MQ CR C+ A P         H        SDPP+LL+AAF+  A     SPPGL +ALH+         LA  Y    PSC+S+A+AHG+RGA IGSVFGGAMALSTAVS RYPR+ VLS TA+GA R+A  FASWTSL+AL+ CTL RTRRRDDL NP +AGAF G  LT  S+RGHWR +++QI TNAGASA+ A+VFD++NR
Sbjct:   23 MQPCRECSDALPHFSRFVHVQH--------SDPPSLLQAAFTPSA----QSPPGLASALHERSTASTTLPLAYGYGYAPPSCLSLALAHGIRGAVIGSVFGGAMALSTAVSGRYPREAVLSQTAHGAVRSATGFASWTSLYALTNCTLRRTRRRDDLLNPAIAGAFAGGALTCFSLRGHWRFHRTQIATNAGASAVFAIVFDAMNR 216
The following BLAST results are available for this feature:
BLAST of Ggra1806.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IWM32.520e-6857.77Mitochondrial import inner membrane translocase su... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF02466Tim17coord: 79..183
e-value: 8.2E-13
score: 48.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..43
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 154..173
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 174..178
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 179..198
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..153
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 199..204
NoneNo IPR availableTMHMMTMhelixcoord: 154..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:684122..684824 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1806.t1Ggra1806.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 684122..684824 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1806.t1 ID=Ggra1806.t1|Name=Ggra1806.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=205bp
MQTCRSCTHAFPPLFPPSAASHPHPASSSPSDPPALLRAAFSSHAPAQSH
SPPGLTAALHDGQPPQLLATAYRQPLPSCISMAVAHGVRGAAIGSVFGGA
MALSTAVSSRYPRDVVLSHTANGAFRNAAAFASWTSLFALSRCTLVRTRR
RDDLFNPLVAGAFTGAVLTLVSVRGHWRLYQSQILTNAGASAMIAVVFDS
INRF*
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