Ggra1806.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1806.t1
Unique NameGgra1806.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:684122..684824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5888.CAK60669
PFAMsTim17
Max annot lvl5878|Ciliophora
KEGG koko:K17795
KEGG TC3.A.8.1
Evalue7.32e-05
EggNOG OGsCOG5596@1|root,KOG1652@2759|Eukaryota,3ZC43@5878|Ciliophora
DescriptionTim17/Tim22/Tim23/Pmp24 family
COG categoryU
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1806Ggra1806Gracilaria gracilis GNS1m malegenetig00000050_pilon 684122..684824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1806.t1Ggra1806.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 684122..684824 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1806.t1.stop1Ggra1806.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 684122..684124 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1806.t1.CDS1Ggra1806.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 684122..684432 -
Ggra1806.t1.CDS2Ggra1806.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 684521..684824 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1806.t1.exon1Ggra1806.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 684122..684432 -
Ggra1806.t1.exon2Ggra1806.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 684521..684824 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1806.t1.intron1Ggra1806.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 684433..684520 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1806.t1.start1Ggra1806.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 684822..684824 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1806.t1 ID=Ggra1806.t1|Name=Ggra1806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=205bp
MQTCRSCTHAFPPLFPPSAASHPHPASSSPSDPPALLRAAFSSHAPAQSH
SPPGLTAALHDGQPPQLLATAYRQPLPSCISMAVAHGVRGAAIGSVFGGA
MALSTAVSSRYPRDVVLSHTANGAFRNAAAFASWTSLFALSRCTLVRTRR
RDDLFNPLVAGAFTGAVLTLVSVRGHWRLYQSQILTNAGASAMIAVVFDS
INRF*
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spliced messenger RNA

>Ggra1806.t1 ID=Ggra1806.t1|Name=Ggra1806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000050_pilon:684122..684824- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGACGTGCCGCTCGTGTACACATGCCTTCCCGCCGCTGTTCCCGCC
GTCTGCCGCGTCGCACCCGCATCCAGCGTCGAGCAGCCCGTCCGATCCGC
CCGCGCTGCTGCGCGCCGCCTTCAGTTCGCACGCGCCCGCGCAGAGCCAC
TCGCCGCCTGGCTTGACCGCCGCCCTGCACGATGGCCAACCGCCGCAGCT
GCTTGCGACCGCCTATCGACAGCCGCTTCCTTCCTGTATCTCCATGGCCG
TCGCGCACGGCGTTCGCGGCGCCGCTATAGGCTCGGTGTTCGGAGGTGCT
ATGGCTCTTTCTACGGCTGTATCCAGTCGGTACCCGCGCGATGTAGTGCT
TTCACATACCGCAAACGGCGCCTTCAGAAACGCTGCAGCTTTTGCGTCCT
GGACGTCGCTGTTTGCCCTTTCGCGCTGCACTCTTGTTCGCACGCGACGA
CGAGATGATCTATTCAATCCGCTCGTGGCCGGTGCGTTCACGGGCGCCGT
TCTCACCCTCGTTTCCGTGCGCGGCCATTGGCGTCTGTATCAATCACAGA
TCCTCACCAACGCCGGTGCCTCGGCCATGATTGCCGTCGTCTTCGACTCT
ATCAACCGGTTTTGA
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protein sequence of Ggra1806.t1

>Ggra1806.t1 ID=Ggra1806.t1|Name=Ggra1806.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=205bp
MQTCRSCTHAFPPLFPPSAASHPHPASSSPSDPPALLRAAFSSHAPAQSH
SPPGLTAALHDGQPPQLLATAYRQPLPSCISMAVAHGVRGAAIGSVFGGA
MALSTAVSSRYPRDVVLSHTANGAFRNAAAFASWTSLFALSRCTLVRTRR
RDDLFNPLVAGAFTGAVLTLVSVRGHWRLYQSQILTNAGASAMIAVVFDS
INRF*
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mRNA from alignment at tig00000050_pilon:684122..684824-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1806.t1 ID=Ggra1806.t1|Name=Ggra1806.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=703bp|location=Sequence derived from alignment at tig00000050_pilon:684122..684824- (Gracilaria gracilis GNS1m male)
ATGCAGACGTGCCGCTCGTGTACACATGCCTTCCCGCCGCTGTTCCCGCC
GTCTGCCGCGTCGCACCCGCATCCAGCGTCGAGCAGCCCGTCCGATCCGC
CCGCGCTGCTGCGCGCCGCCTTCAGTTCGCACGCGCCCGCGCAGAGCCAC
TCGCCGCCTGGCTTGACCGCCGCCCTGCACGATGGCCAACCGCCGCAGCT
GCTTGCGACCGCCTATCGACAGCCGCTTCCTTCCTGTATCTCCATGGCCG
TCGCGCACGGCGTTCGCGGCGCCGCTATAGGCTCGGTGTTCGGAGGTGCT
ATGGGTATGTTATTACGCTCTTTGTTCGCTCGTTACGTGTTGTTGTTTAC
ATCACTGCTGACTCGCATGTGTTTATGTTATATACTTGTTAGCTCTTTCT
ACGGCTGTATCCAGTCGGTACCCGCGCGATGTAGTGCTTTCACATACCGC
AAACGGCGCCTTCAGAAACGCTGCAGCTTTTGCGTCCTGGACGTCGCTGT
TTGCCCTTTCGCGCTGCACTCTTGTTCGCACGCGACGACGAGATGATCTA
TTCAATCCGCTCGTGGCCGGTGCGTTCACGGGCGCCGTTCTCACCCTCGT
TTCCGTGCGCGGCCATTGGCGTCTGTATCAATCACAGATCCTCACCAACG
CCGGTGCCTCGGCCATGATTGCCGTCGTCTTCGACTCTATCAACCGGTTT
TGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:684122..684824-

>Ggra1806.t1 ID=Ggra1806.t1|Name=Ggra1806.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000050_pilon:684122..684824- (Gracilaria gracilis GNS1m male)
ATGCAGACGTGCCGCTCGTGTACACATGCCTTCCCGCCGCTGTTCCCGCC
GTCTGCCGCGTCGCACCCGCATCCAGCGTCGAGCAGCCCGTCCGATCCGC
CCGCGCTGCTGCGCGCCGCCTTCAGTTCGCACGCGCCCGCGCAGAGCCAC
TCGCCGCCTGGCTTGACCGCCGCCCTGCACGATGGCCAACCGCCGCAGCT
GCTTGCGACCGCCTATCGACAGCCGCTTCCTTCCTGTATCTCCATGGCCG
TCGCGCACGGCGTTCGCGGCGCCGCTATAGGCTCGGTGTTCGGAGGTGCT
ATGGCTCTTTCTACGGCTGTATCCAGTCGGTACCCGCGCGATGTAGTGCT
TTCACATACCGCAAACGGCGCCTTCAGAAACGCTGCAGCTTTTGCGTCCT
GGACGTCGCTGTTTGCCCTTTCGCGCTGCACTCTTGTTCGCACGCGACGA
CGAGATGATCTATTCAATCCGCTCGTGGCCGGTGCGTTCACGGGCGCCGT
TCTCACCCTCGTTTCCGTGCGCGGCCATTGGCGTCTGTATCAATCACAGA
TCCTCACCAACGCCGGTGCCTCGGCCATGATTGCCGTCGTCTTCGACTCT
ATCAACCGGTTTTGA
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