Ggra1783.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1783.t1
Unique NameGgra1783.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length71
Homology
BLAST of Ggra1783.t1 vs. uniprot
Match: R7QC50 (60S ribosomal protein L38 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QC50_CHOCR)

HSP 1 Score: 116 bits (291), Expect = 7.250e-33
Identity = 58/70 (82.86%), Postives = 65/70 (92.86%), Query Frame = 0
Query:    1 MPKQVFEIKDFLLAARRKDARCVTIKKQKSGPLKFKVRCSKYLYTLVVKDNEKADKLTQSLPPGLQLKTV 70
            MPKQV EIKDFL+AARRKDAR VTIKKQK+G LKFKVRCSKYLYTLVVKD++KADKL QS+PPGLQ K++
Sbjct:    1 MPKQVHEIKDFLMAARRKDARSVTIKKQKNGSLKFKVRCSKYLYTLVVKDSDKADKLQQSMPPGLQRKSI 70          
BLAST of Ggra1783.t1 vs. uniprot
Match: A0A383VJV9 (Uncharacterized protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383VJV9_TETOB)

HSP 1 Score: 103 bits (256), Expect = 1.590e-27
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 0
Query:    1 MPKQVFEIKDFLLAARRKDARCVTIKKQKSGPLKFKVRCSKYLYTLVVKDNEKADKLTQSLPPGLQL 67
            MP+Q+ EIKDFLL ARRKDAR V IKK K+G  KFKVRCSKYLYTL V+D EKADKL QSLPPGLQ+
Sbjct:    1 MPRQITEIKDFLLTARRKDARSVKIKKTKTGVTKFKVRCSKYLYTLCVQDTEKADKLKQSLPPGLQV 67          
BLAST of Ggra1783.t1 vs. uniprot
Match: A0A1Y3AQH3 (60S ribosomal protein L38 n=2 Tax=Arthropoda TaxID=6656 RepID=A0A1Y3AQH3_EURMA)

HSP 1 Score: 101 bits (251), Expect = 8.950e-27
Identity = 50/70 (71.43%), Postives = 57/70 (81.43%), Query Frame = 0
Query:    1 MPKQVFEIKDFLLAARRKDARCVTIKKQKSGPLKFKVRCSKYLYTLVVKDNEKADKLTQSLPPGLQLKTV 70
            MPK++ EIKDFLL ARRKDA+ V IKK K    KFKVRCSKYLYTLV+ D EKA+KL QSLPPGLQ+K +
Sbjct:    1 MPKEIKEIKDFLLTARRKDAKSVKIKKNKDNVTKFKVRCSKYLYTLVINDKEKAEKLKQSLPPGLQVKEI 70          
BLAST of Ggra1783.t1 vs. uniprot
Match: C1N1E2 (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N1E2_MICPC)

HSP 1 Score: 99.0 bits (245), Expect = 7.170e-26
Identity = 51/70 (72.86%), Postives = 57/70 (81.43%), Query Frame = 0
Query:    1 MPKQVFEIKDFLLAARRKDARCVTIKKQKSGPLKFKVRCSKYLYTLVVKDNEKADKLTQSLPPGLQLKTV 70
            MPKQ+ EIKDFLL ARRKDA+ V IKK   G  KFKVRCSKYLYTLVV D +KADKL QSLPPGLQ++ +
Sbjct:    1 MPKQIHEIKDFLLTARRKDAKSVKIKKT-GGKTKFKVRCSKYLYTLVVSDGDKADKLKQSLPPGLQVQAI 69          
BLAST of Ggra1783.t1 vs. uniprot
Match: T1FMK4 (60S ribosomal protein L38 n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FMK4_HELRO)

HSP 1 Score: 99.0 bits (245), Expect = 7.990e-26
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 0
Query:    1 MPKQVFEIKDFLLAARRKDARCVTIKKQKSGPLKFKVRCSKYLYTLVVKDNEKADKLTQSLPPGLQLK 68
            MPKQ+ EIKDFLL ARR DA+ V IKK K   +KFKVRCS+YLYTLV+ DNEKADKL QSLPPGLQ+K
Sbjct:    1 MPKQIQEIKDFLLTARRADAKSVKIKKNKDN-VKFKVRCSRYLYTLVINDNEKADKLRQSLPPGLQVK 67          
BLAST of Ggra1783.t1 vs. uniprot
Match: A0A423U9T7 (60S ribosomal protein L38 n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A423U9T7_PENVA)

HSP 1 Score: 97.4 bits (241), Expect = 3.000e-25
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 0
Query:    1 MPKQVFEIKDFLLAARRKDARCVTIKKQKSGPLKFKVRCSKYLYTLVVKDNEKADKLTQSLPPGLQLK 68
            MP+Q+ EIKDFLL ARRKDAR V IKK K   +KFKVRCS++LYTLV++D EKA+KL QSLPPGLQ+K
Sbjct:    1 MPRQIMEIKDFLLTARRKDARSVRIKKNKHN-VKFKVRCSRFLYTLVIRDREKAEKLKQSLPPGLQVK 67          
BLAST of Ggra1783.t1 vs. uniprot
Match: A0A7R8XAA3 (60S ribosomal protein L38 n=2 Tax=Bilateria TaxID=33213 RepID=A0A7R8XAA3_9CRUS)

HSP 1 Score: 97.4 bits (241), Expect = 3.340e-25
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0
Query:    1 MPKQVFEIKDFLLAARRKDARCVTIKKQKSGPLKFKVRCSKYLYTLVVKDNEKADKLTQSLPPGLQLK 68
            MPK++ EIKDFLL ARRKDA+ V IKK  S  +KFKVRCS+YLYTLVVKD EKA+KL QSLPPGLQ+K
Sbjct:    1 MPKEIKEIKDFLLTARRKDAKSVKIKKN-SDNVKFKVRCSRYLYTLVVKDKEKAEKLKQSLPPGLQVK 67          
BLAST of Ggra1783.t1 vs. uniprot
Match: A0A150H229 (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H229_GONPE)

HSP 1 Score: 97.1 bits (240), Expect = 4.150e-25
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 0
Query:    1 MPKQVFEIKDFLLAARRKDARCVTIKKQKSGPLKFKVRCSKYLYTLVVKDNEKADKLTQSLPPGLQLKTV 70
            MPKQ+ EIKDFLL ARRKDAR V IKK  +G  KFKVRCSKYLYTLVV D++KADKL QSLPPGL ++ +
Sbjct:    1 MPKQINEIKDFLLTARRKDARSVKIKKT-AGVTKFKVRCSKYLYTLVVADSDKADKLKQSLPPGLSVQDI 69          
BLAST of Ggra1783.t1 vs. uniprot
Match: RL38 (60S ribosomal protein L38 n=5 Tax=Eumetazoa TaxID=6072 RepID=RL38_BRABE)

HSP 1 Score: 97.1 bits (240), Expect = 4.260e-25
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 0
Query:    1 MPKQVFEIKDFLLAARRKDARCVTIKKQKSGPLKFKVRCSKYLYTLVVKDNEKADKLTQSLPPGLQLK 68
            MPKQ+ EIKDFLL ARRKDA+ V IKK K   +KFKVRCS+YLYTLV+ D EKADKL QSLPPGL +K
Sbjct:    1 MPKQIHEIKDFLLTARRKDAKSVKIKKNKDN-VKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVK 67          
BLAST of Ggra1783.t1 vs. uniprot
Match: A7RKV4 (60S ribosomal protein L38 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RKV4_NEMVE)

HSP 1 Score: 96.7 bits (239), Expect = 6.060e-25
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = 0
Query:    1 MPKQVFEIKDFLLAARRKDARCVTIKKQKSGPLKFKVRCSKYLYTLVVKDNEKADKLTQSLPPGLQLK 68
            MPKQ+ EIKDFL+ ARRKDA+ V IKK K   +KFKVRCS+YLYTLV++D EKADKL QSLPPGL +K
Sbjct:    1 MPKQIHEIKDFLITARRKDAKSVKIKKTKES-VKFKVRCSRYLYTLVIQDKEKADKLKQSLPPGLAVK 67          
The following BLAST results are available for this feature:
BLAST of Ggra1783.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QC507.250e-3382.8660S ribosomal protein L38 n=1 Tax=Chondrus crispus... [more]
A0A383VJV91.590e-2777.61Uncharacterized protein n=2 Tax=Scenedesmaceae Tax... [more]
A0A1Y3AQH38.950e-2771.4360S ribosomal protein L38 n=2 Tax=Arthropoda TaxID... [more]
C1N1E27.170e-2672.86Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
T1FMK47.990e-2675.0060S ribosomal protein L38 n=1 Tax=Helobdella robus... [more]
A0A423U9T73.000e-2572.0660S ribosomal protein L38 n=1 Tax=Penaeus vannamei... [more]
A0A7R8XAA33.340e-2575.0060S ribosomal protein L38 n=2 Tax=Bilateria TaxID=... [more]
A0A150H2294.150e-2572.86Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
RL384.260e-2573.5360S ribosomal protein L38 n=5 Tax=Eumetazoa TaxID=... [more]
A7RKV46.060e-2572.0660S ribosomal protein L38 n=2 Tax=Nematostella vec... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002675Ribosomal protein L38ePFAMPF01781Ribosomal_L38ecoord: 2..69
e-value: 1.3E-31
score: 108.5
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 1..69
IPR038464Ribosomal protein L38e superfamilyGENE3D3.30.720.90coord: 1..70
e-value: 1.3E-31
score: 110.5
NoneNo IPR availablePIRSRPIRSR003033-1PIRSR003033-1coord: 26..68
e-value: 0.0039
score: 11.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:614496..614883 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1783.t1Ggra1783.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 614496..614883 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1783.t1 ID=Ggra1783.t1|Name=Ggra1783.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=71bp
MPKQVFEIKDFLLAARRKDARCVTIKKQKSGPLKFKVRCSKYLYTLVVKD
NEKADKLTQSLPPGLQLKTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002675Ribosomal_L38e
IPR038464Ribosomal_L38e_sf