Ggra176.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra176.t1
Unique NameGgra176.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length462
Homology
BLAST of Ggra176.t1 vs. uniprot
Match: A0A2V3IMD5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD5_9FLOR)

HSP 1 Score: 414 bits (1063), Expect = 2.890e-138
Identity = 209/417 (50.12%), Postives = 286/417 (68.59%), Query Frame = 0
Query:    1 MEEPPISFQNDRNYWNNGLDGVIKEHLLQHQAYLNWTCSSVQVFRGPNTTDFTAFVTTMHECT-NKSTGQIIESPDCLCDIGIGGWFQTAGRFGFVDFLPPFVYDRYVVFAPVSEATVSGNVWFFIQTFDGKAWISILSLFIMFSFLKILDRRFAVPATFEPLPKTSSRIRQYAHYLTKSNLPFRLRKGIQSTVMRMIMLSDETVVDNGNTTRQWFVNLILAVTALFLVLSYEASMTASLVQETVETKFQSAADLLNCDVHPSEVCMLRGGALETYWKNSIAIEECHAQNPPNYFNSYTTLFQAVENGQCKYSIVLESAITSAIRKRYCGDFVIAGEPIWNGGLSMLLPKGSNLTEAMSRATLELLGNQTTTSLIRYFNNLPQCKVEVNTTLSFEKLRHFFFIAYSVGGTLFVAMAL 416
            M E PISF NDR + NNG+DG + E++ + Q +L W CSSV +F+  NT+ F AF+  MHECT N+STG  + S  C CDIGIGGWFQ   R+G VDFLPPFV+DRY V   VS    SG + FF++TFD  +WI+I++L  +F+ LK+LD RFAV   + PL   S RIR+  H+L K    +RLRK  QS+V R+++  D  VVDNG +TRQWF+NL++ + ALFLVLS+EASMTASLVQE + + ++S  D  +C + PS+VC LRGGALE +W  +IA   CH  NP  Y ++Y  ++  + +G+CK+SI LES IT+ IR + CG  V+  EP++  GLSM++PKGSNLTEAMS+AT+ LL +Q ++ L  +    P+C  +V +TL+F KL+ FF +A+SV   +   M L
Sbjct:    1 MHEAPISFINDRKFSNNGIDGAVSEYVSELQGFLGWRCSSVTLFQHQNTSGFNAFIEQMHECTTNQSTG--VSSNSCPCDIGIGGWFQNQFRYGKVDFLPPFVHDRYRVATHVSNTDASGEMPFFLKTFDSLSWITIVALTCIFTLLKLLDSRFAVAEPYTPLSGVS-RIRRCLHFLWKHPRLYRLRKAGQSSVTRLMLQPDNEVVDNGKSTRQWFLNLVIGICALFLVLSFEASMTASLVQEKITSTYESPEDFRSCKIPPSDVCALRGGALEMFWNTNIATSNCHNGNPIQYLSTYEEIYDGLASGKCKFSICLESVITTQIRTQSCGQLVLLEEPLYTSGLSMVVPKGSNLTEAMSKATMTLLLSQPSSFLESFLRKWPKCTKKVASTLTFRKLKLFFILAFSVCAAILFVMLL 414          
BLAST of Ggra176.t1 vs. uniprot
Match: A0A2V3IME4 (Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME4_9FLOR)

HSP 1 Score: 401 bits (1031), Expect = 7.950e-133
Identity = 201/410 (49.02%), Postives = 266/410 (64.88%), Query Frame = 0
Query:    1 MEEPPISFQNDRNYWNNGLDGVIKEHLLQHQAYLNWTCSSVQVFRGPNTTDFTAFVTTMHECTNKSTGQIIESPDCLCDIGIGGWFQTAGRFGFVDFLPPFVYDRYVVFAPVSEATVSGNVWFFIQTFDGKAWISILSLFIMFSFLKILDRRFAVPATFEPLPKTSSRIRQYAHYLTKSNLPFRLRKGIQSTVMRMIMLSDETVVDNGNTTRQWFVNLILAVTALFLVLSYEASMTASLVQETVETKFQSAADLLNCDVHPSEVCMLRGGALETYWKNSIAIEECHAQNPPNYFNSYTTLFQAVENGQCKYSIVLESAITSAIRKRYCGDFVIAGEPIWNGGLSMLLPKGSNLTEAMSRATLELLGNQTTTSLIRYFNNLPQCKVEVNTTLSFEKLRHFFFIAYSVGGTL 410
            ++EPPI+F +DR Y N G+ G+I ++L + Q YLNW+CSSVQ + G   T F  FV  M +C+    G +   P C CDIGI GWFQ   RF  VDFLPPFV D Y V   +S + VSG   FFI TFD  AW+SI  L ++FS +K  DR+F    +FE L +T+ RI+++ H L K    +R R+ +QST  RMI+L D  VV+N    RQW +N +++V+ LFL+LSYEASMTASLVQETV   FQS  D   C + P+EVC+  GGALE +W  SIAIE CH Q  P + +SY  LF AV+N  CKY ++LES   +AI  +YCG  + A +PI++GGL+M+LPK SNLT+ MS ATL++     T  + +YF ++P+C +   TTL+F KLR FF IA   G  L
Sbjct:   42 LDEPPIAFIDDRTYANGGVSGIIAQYLREMQGYLNWSCSSVQHYTGGKQTSFNHFVRMMEDCSEN--GAVRNDPGCTCDIGISGWFQNHHRFRRVDFLPPFVTDGYEVVFHISNSEVSGRRMFFITTFDRLAWVSIFGLMLLFSAIKFFDRKFCPIDSFEALEETNPRIQRFVHVLMKYPTLYRFRRALQSTFSRMILLPDSDVVENQTANRQWVLNTVISVSGLFLILSYEASMTASLVQETVSAGFQSIQDFQTCRISPAEVCLPGGGALEMFWNTSIAIEVCHKQRQPFFASSYDELFHAVDNRTCKYGLLLESTANAAINSKYCGKLLAAEKPIYSGGLAMVLPKNSNLTDVMSYATLKITNEVATPGIEQYFASIPKCSINPETTLNFRKLRLFFGIALCTGAFL 449          
BLAST of Ggra176.t1 vs. uniprot
Match: A0A2V3IMD4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD4_9FLOR)

HSP 1 Score: 360 bits (923), Expect = 1.040e-115
Identity = 188/441 (42.63%), Postives = 266/441 (60.32%), Query Frame = 0
Query:    3 EPPISFQNDRNYWNNGLDGVIKEHLLQHQAYLNWTCSSVQVFRGPNTTDFTAFVTTMHECTNKSTGQIIESPDCLCDIGIGGWFQTAGRFGFVDFLPPFVYDRYVVFAPVSEATVSGNVWFFIQTFDGKAWISILSLFIMFSFLKILDRRFAVPATFEPLPKTSSRIRQYAHYLTKSNLPFRLRKGIQSTVMRMIMLSDETVVDNGNTTRQWFVNLILAVTALFLVLSYEASMTASLVQETVETKFQSAADLLNCDVHPSEVCMLRGGALETYWKNSIAIEE-CHAQNPPNYFNSYTTLFQAVENGQCKYSIVLESAITSAIRKRYCGDFVIAGEPIWNGGLSMLLPKGSNLTEAMSRATLELLGNQTTTSLIRYFNNLPQCKVEVNTTLSFEKLRHFFFIAYSVGGTLFVAMALLPQTNSEENRFREASGNHESPEMVRK 442
            EPPI+F NDRNY N G+DG+I  +L Q Q +LNWTCSSVQ +   +TT F  F+T M  C+    G I + P C CDIGIGGWF  + RFG VDFLPPFVYD Y V   +S++ VSG   FFI TFD + W+ I  L ++F+ +++    F   A ++PL  T + IR+ AH+L      +RLR  IQ    RMI++ +       N T  W +  ++ +  LFL+L+YEASMTAS+VQETV ++FQS  D   C + P +VC+ RGG+ +TYW   +A E  CH    P+   SY  +FQ VEN  C++ I+LES + S I ++YCG  +  G PI+ GGL+M+LPK S  TE MS ATL++    T  SL  +++    C  E+ T+L F+KL+ FF IA+  G  LF+ + ++  T +      +    + S ++ R+
Sbjct:   44 EPPIAFLNDRNYANLGIDGIIANYLNQMQGFLNWTCSSVQRYSDGSTTGFNNFITMMERCSEN--GTIKDDPHCKCDIGIGGWFTNSKRFGRVDFLPPFVYDSYQVIFHISDSKVSGRSPFFITTFDSRGWLCIFGLVLLFATIRMFSA-FGDHARYQPLEPTVTPIRRIAHFLYNHPFFYRLRISIQRIFSRMILMPEPEDFSRPNNTFLWILKTVVTICGLFLILAYEASMTASIVQETVTSEFQSGKDFQTCRIDPKDVCLPRGGSFDTYWTEVLAKERPCHKGRSPHLMTSYEEVFQGVENRTCRFGILLESTVHSTIHRKYCGTILSNGNPIYTGGLAMVLPKDSMHTEVMSLATLKITDAATVPSLEEFYSTTGSCSAELATSLPFQKLQLFFIIAFCTG-FLFLTVVVIKWTLNRIGPSTDDQDEYRSRDLNRR 480          
BLAST of Ggra176.t1 vs. uniprot
Match: A0A2V3IUK7 (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 309 bits (791), Expect = 6.140e-97
Identity = 171/407 (42.01%), Postives = 247/407 (60.69%), Query Frame = 0
Query:    1 MEEPPISFQNDRNYWNNGLDGVIKEHLLQHQAYLNWTCSSVQVFRGPNTTDFTAFVTTMHECTNKSTGQIIESPDCLCDIGIGGWFQTAGRFGFVDFLPPFVYDRYVVFAPVSEATVSGNVWFFIQTFDGKAWISILSLFIMFSFLKILDRRFA-VPATFEPLPKTSSRIRQYAHYL-TKSNLPFRLRKGIQSTVMRMIMLSDETVVDNGNTTRQWFVNLILAVTALFLVLSYEASMTASLVQETVETKFQSAADLLNCDVHPSEVCMLRGGALETYWKNSIAIEECHAQNP-PNYFN-SYTTLFQAVENGQCKYSIVLESAITSAIRKRYCGDFVIAGEPIWNGGLSMLLPKGSNLTEAMSRATLELLGNQTTTSLIRYFNNLPQCKVEVNTTLSFEKLRHFFFIA 403
            + EPPI + +   Y NNG++G+I ++L + QA L+W CS    +   + T F  F+  M  CT    G I + P C C+IGIGGWF +A R   VD LPPFVYD   V   VS    SG+  FF+ TFD ++W+ + ++ I+F+  K LD RFA +P+  EP    ++   +  H+L T  N   RL   I+ST +R+++ SD  +V N +    + +NLI+ +  L +VLSYEASMTA+LVQETV + +QS  DL  C + P +VC+  G A+ T+W ++IA  +CH ++   NYF  S+     AV+NG CK+ +VL+S I  AI  +YCG  + +GEPI+ GGLSM+LPK SNLT+AM  ATL+L    +  SL +YF  + +C     + L+FEKL+  F  A
Sbjct:   40 IHEPPIVYLDPNTYSNNGINGIITKYLTEMQALLDWQCSEFIPYVEGDGTSFNRFIDMMDNCTQN--GAIKDDPACRCEIGIGGWFNSADRDERVDLLPPFVYDGIRVTFHVSNTRRSGSKLFFVTTFDLRSWLCLFAIIILFALAKFLDERFAPIPSADEP--NAANSWGRCLHFLRTNWN---RLITSIRSTTLRIVLQSDHDIVQNQHGAHNFNLNLIIGIFGLLVVLSYEASMTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGGSAVLTFWNDAIAYGDCHRESKGKNYFRGSFEETLDAVKNGTCKFGLVLDSTIQEAIHGKYCGQLLSSGEPIYTGGLSMILPKNSNLTKAMRLATLKLRNEASAPSLQQYFQTMSKCAPITGSVLTFEKLQLLFVFA 439          
BLAST of Ggra176.t1 vs. uniprot
Match: R7Q0P8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q0P8_CHOCR)

HSP 1 Score: 156 bits (394), Expect = 1.070e-40
Identity = 78/186 (41.94%), Postives = 118/186 (63.44%), Query Frame = 0
Query:   52 FTAFVTTMHECTNKSTGQIIESPDCLCDIGIGGWFQTAGRFGFVDFLPPFVYDRYVVFAPVSEATVSGNVWFFIQTFDGKAWISILSLFIMFSFLKILDRRFAVPA-TFEPLPKTSSRIRQYAHYLTKSNLPFRLRKGIQSTVMRMIMLSDETVVDNGNTTRQWFVNLILAVTALFLVLSYEASMT 236
            F + V  M  C  +  G + E PDC CD+ +GGW ++  R G VDFLPPF+ D   +   V E +V+    FF+  F    W  ++ L ++F+FLK+LDRRF  P  ++ PLP +  R+R+  HYL KS +P+RLRK +QST+ RM+  S+   V +  ++RQW +NL++A  +LF++L+YE+SMT
Sbjct:   93 FNSIVEKMDRCVTEE-GTMREDPDCNCDMAVGGWMESDTRLGKVDFLPPFLIDGIGIATHVDETSVASAGAFFLTAFSLAVWGLVVMLSVVFTFLKMLDRRFVPPDDSYTPLPASEPRLRRIRHYLLKSRIPYRLRKALQSTLSRMVGFSNSDPVTDKESSRQWVLNLVIACCSLFIILAYESSMT 277          
BLAST of Ggra176.t1 vs. uniprot
Match: R7QE12 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE12_CHOCR)

HSP 1 Score: 139 bits (351), Expect = 6.290e-36
Identity = 69/158 (43.67%), Postives = 102/158 (64.56%), Query Frame = 0
Query:   80 IGIGGWFQTAGRFGFVDFLPPFVYDRYVVFAPVSEATVSGNVWFFIQTFDGKAWISILSLFIMFSFLKILDRRFAVP-ATFEPLPKTSSRIRQYAHYLTKSNLPFRLRKGIQSTVMRMIMLSDETVVDNGNTTRQWFVNLILAVTALFLVLSYEASMT 236
            + +GGWF+   RF  VDFLPPF  D   +       + +    FFI  F    W  I+ L  +F+FLK+LDRRF  P  +++PLP+TSSR+R+  HYL KS +P+RLRK +QST+ RM+       ++   ++RQW +NL++A+ +LFL+L+YEA+MT
Sbjct:    1 MAVGGWFRNPERFRRVDFLPPFAIDGLSIVVHTDNTSSASAGAFFITAFSTTVWFFIVGLVCVFTFLKMLDRRFVPPDESYQPLPRTSSRVRRMKHYLLKSRIPYRLRKALQSTLSRMVGQGGYDPIEGKTSSRQWVLNLLIALCSLFLILTYEAAMT 158          
BLAST of Ggra176.t1 vs. uniprot
Match: R7Q540 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q540_CHOCR)

HSP 1 Score: 125 bits (313), Expect = 7.390e-30
Identity = 69/200 (34.50%), Postives = 112/200 (56.00%), Query Frame = 0
Query:  236 TASLVQETVETKFQSAADLLNCDVHPSEVCMLRGGALETYWKNSIAIEECHAQNPPNYFNSYTTLFQAVENGQCKYSIVLESAITSAIRKRYCGDFVIAGEPIWNGGLSMLLPKGSNLTEAMSRATLELLGNQTTTSLIRYFNNLPQCKVEVNTTLSFEKLRHFFFIAYSVGGTLFVAMALLPQT--NSEENRFREASGN 433
            +A+LVQ+T+ ++++   DL  C+V PS+VC+ +GGA++ +W N+I    CH + P  YF+ Y      +   +C Y + L S+     ++ YCG  ++ GEP    GLS +LP+GSN+T  +S  T+ L       +  RY     +C  E N TL+ EKLR FF++A+S    +F+ M L  Q   + E ++    SG+
Sbjct:   10 SAALVQDTLSSRYRGLQDLKTCNVRPSDVCVPKGGAIDLFWINTIGKNACHKEKPV-YFSRYKDGIDNLLTKKCLYMLTLSSSGNELTQREYCGRLLVTGEPALRTGLSFVLPRGSNMTSHLSEKTVFLTDAGVLPTPERYLRATGKCP-EQNLTLNVEKLRFFFYMAFSACLFIFLEMILDSQQPPSLEASKLENGSGS 207          
BLAST of Ggra176.t1 vs. uniprot
Match: R7Q656 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q656_CHOCR)

HSP 1 Score: 92.8 bits (229), Expect = 1.850e-19
Identity = 43/90 (47.78%), Postives = 68/90 (75.56%), Query Frame = 0
Query:  148 ILDRRFAVP-ATFEPLPKTSSRIRQYAHYLTKSNLPFRLRKGIQSTVMRMIMLSDETVVDNGNTTRQWFVNLILAVTALFLVLSYEASMT 236
            +LDRRF  P  +++PLP+TSSR+R+  HYL KS +P+RLRK +QST+ RM+       ++   ++RQW +NL++A+ +LFL+L+YE++MT
Sbjct:    1 MLDRRFVPPDESYQPLPRTSSRVRRMKHYLLKSRIPYRLRKALQSTMSRMVGQGGYDPIEGKTSSRQWVLNLLIALCSLFLILTYESAMT 90          
The following BLAST results are available for this feature:
BLAST of Ggra176.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3IMD52.890e-13850.12Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IME47.950e-13349.02Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda... [more]
A0A2V3IMD41.040e-11542.63Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUK76.140e-9742.01Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
R7Q0P81.070e-4041.94Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QE126.290e-3643.67Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q5407.390e-3034.50Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q6561.850e-1947.78Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.190.10coord: 234..341
e-value: 9.2E-7
score: 30.5
NoneNo IPR availableGENE3D3.40.190.10coord: 342..374
e-value: 9.2E-7
score: 30.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 425..461
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 427..442
NoneNo IPR availablePANTHERPTHR18966IONOTROPIC GLUTAMATE RECEPTORcoord: 64..414
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 232..398
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 126..131
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 214..231
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 418..461
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 106..125
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 399..417
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 132..149
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 150..213
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..105
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 78..374
NoneNo IPR availableTMHMMTMhelixcoord: 132..149
NoneNo IPR availableTMHMMTMhelixcoord: 214..231
NoneNo IPR availableTMHMMTMhelixcoord: 399..418

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000158_piloncontigtig00000158_pilon:46750..48482 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra176.t1Ggra176.t1Gracilaria gracilis GNS1m malemRNAtig00000158_pilon 46750..48482 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra176.t1 ID=Ggra176.t1|Name=Ggra176.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=462bp
MEEPPISFQNDRNYWNNGLDGVIKEHLLQHQAYLNWTCSSVQVFRGPNTT
DFTAFVTTMHECTNKSTGQIIESPDCLCDIGIGGWFQTAGRFGFVDFLPP
FVYDRYVVFAPVSEATVSGNVWFFIQTFDGKAWISILSLFIMFSFLKILD
RRFAVPATFEPLPKTSSRIRQYAHYLTKSNLPFRLRKGIQSTVMRMIMLS
DETVVDNGNTTRQWFVNLILAVTALFLVLSYEASMTASLVQETVETKFQS
AADLLNCDVHPSEVCMLRGGALETYWKNSIAIEECHAQNPPNYFNSYTTL
FQAVENGQCKYSIVLESAITSAIRKRYCGDFVIAGEPIWNGGLSMLLPKG
SNLTEAMSRATLELLGNQTTTSLIRYFNNLPQCKVEVNTTLSFEKLRHFF
FIAYSVGGTLFVAMALLPQTNSEENRFREASGNHESPEMVRKPPRRVSCS
STEVSHEDAEV*
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