Ggra1757.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1757.t1
Unique NameGgra1757.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length177
Homology
BLAST of Ggra1757.t1 vs. uniprot
Match: A0A2V3IMP4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMP4_9FLOR)

HSP 1 Score: 261 bits (666), Expect = 3.220e-86
Identity = 135/176 (76.70%), Postives = 152/176 (86.36%), Query Frame = 0
Query:    1 MSQAPVSRRQALLGGAALLATVGLSPFATLAKSGDSPKISVFGVGGASSPFDAGVQTGGKVQYKPFGEDEVAVFKFIVDDAKERLIGSVDSIKDKKWEDIRSQLRLQTDLRKTQLTINSNMPDKKSEEKASKAYRVFKNDIEKLDQACVQKDQARAYKAYNAALKSLAAWQETTGY 176
            MSQ+ VSRRQALL GAALL+   L P +  AK GDSPKISVFGVGGASSPFDAG+QTGGKVQYKPF EDEVAVF+ I+DDAK+RLIGS  SIKDK WEDIRSQ+RLQ DLR+TQ+TIN NMPDKK+ EKA+KAY+ FK DIE LDQAC+QKDQ++AYKAYNAALKS A WQ TTG+
Sbjct:   35 MSQSSVSRRQALLTGAALLSAAVLQPLSAYAKGGDSPKISVFGVGGASSPFDAGIQTGGKVQYKPFLEDEVAVFQRIIDDAKDRLIGSSASIKDKNWEDIRSQIRLQYDLRRTQITINGNMPDKKTTEKATKAYQAFKTDIENLDQACIQKDQSKAYKAYNAALKSFANWQATTGF 210          
BLAST of Ggra1757.t1 vs. uniprot
Match: R7QKC0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKC0_CHOCR)

HSP 1 Score: 211 bits (537), Expect = 9.210e-66
Identity = 113/172 (65.70%), Postives = 133/172 (77.33%), Query Frame = 0
Query:    5 PVSRRQALLGGAALLATVGLSPFATLAKSGDSPKISVFGVGGASSPFDAGVQTGGKVQYKPFGEDEVAVFKFIVDDAKERLIGSVDSIKDKKWEDIRSQLRLQTDLRKTQLTINSNMPDKKSEEKASKAYRVFKNDIEKLDQACVQKDQARAYKAYNAALKSLAAWQETTGY 176
            P+SRR AL   AAL+     SP A  AKSGDSPKIS+FGVGGASSPF AGVQT GKV YK FG+ EV VFK IV D+K+RL GSVDSIK K W+DIR QLRLQ DLRKTQ+T+NS + D K   KA KAY+ FK DIE+LD ACVQK+Q +AYKA+ A++ SL+AWQ+T G+
Sbjct:  101 PMSRRNALAAAAALVTGAVFSPLAASAKSGDSPKISIFGVGGASSPFTAGVQTSGKVLYKTFGDAEVDVFKRIVTDSKDRLEGSVDSIKIKSWDDIRGQLRLQNDLRKTQITVNSGISDPKQAAKAVKAYQNFKTDIERLDAACVQKNQDQAYKAHRASVASLSAWQDTVGF 272          
BLAST of Ggra1757.t1 vs. uniprot
Match: A0A7S1TF77 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TF77_9RHOD)

HSP 1 Score: 101 bits (252), Expect = 1.240e-23
Identity = 69/173 (39.88%), Postives = 96/173 (55.49%), Query Frame = 0
Query:    6 VSRRQALLGG-AALLATVGL-SPFATLAKSGDSPKISVFGVGGASSPFDAGVQTGGKVQYKPFGEDEVAVFKFIVDDAKERLIGSVDSIKDKKWEDIRSQLRLQT-DLRKTQLTINSNMPDKKSEEKASKAYRVFKNDIEKLDQACVQKDQARAYKAYNAALKSLAAWQETTG 175
            VSRR  LLGG AA+ A VG  SP    A +GD PK S+FG G  SSPF   +   G + YK F  +E+ +F   + + K R+  +   I ++ WED+RS++R QT D+RK Q  +   + D   + +A  AY+ FKN +EKLD     KD  RA +     L++L  W   TG
Sbjct:   41 VSRRAVLLGGIAAVAAAVGAGSP----ALAGDGPKYSIFGGGAMSSPFTYTITKKGPILYKKFNPEEIELFTNTIKEGKRRIALTAGYIDERSWEDVRSEIRRQTQDMRKYQFRLMEALDD---DTEAQDAYKQFKNSLEKLDYLARVKDADRAKREQATLLRALDNWASKTG 206          
BLAST of Ggra1757.t1 vs. uniprot
Match: D5KXJ1 (Photosystem II extrinsic protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=D5KXJ1_GALSU)

HSP 1 Score: 87.4 bits (215), Expect = 5.390e-18
Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 0
Query:   24 LSPFATLAKSGDSPKISVFGVGGASSPFDAGVQTGGKVQYKPFGEDEVAVFKFIVDDAKERLIGSVDSIKDKKWEDIRSQLRLQT-DLRKTQLTINSNMPDKKSEEKASKAYRVFKNDIEKLDQACVQKDQARAYKAYNAALKSLAAWQETTG 175
            L P    AKSG+S K+S+FGV G SSPF A +++ G+  YK   E+E++ +   + D K  L      I +K WEDI+S +R +  DLR  Q  + +++ +++  +KA K Y  F   IE +D A  QK+  +  +A   A+K L  W    G
Sbjct:   73 LLPKNASAKSGESAKLSIFGVEGLSSPFTADLKSKGQPLYKNLNEEEISRYTKAITDGKASLSKIPGYINEKSWEDIKSLVRQRVADLRSAQKKMMASISEQRIRQKAEKLYDSFIKSIEDIDYAARQKNGDKVRQAQQQAMKLLQEWASAAG 225          
BLAST of Ggra1757.t1 vs. uniprot
Match: D6PTH0 (Photosystem II Q n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=D6PTH0_GALSU)

HSP 1 Score: 87.4 bits (215), Expect = 5.500e-18
Identity = 55/153 (35.95%), Postives = 84/153 (54.90%), Query Frame = 0
Query:   24 LSPFATLAKSGDSPKISVFGVGGASSPFDAGVQTGGKVQYKPFGEDEVAVFKFIVDDAKERLIGSVDSIKDKKWEDIRSQLRLQT-DLRKTQLTINSNMPDKKSEEKASKAYRVFKNDIEKLDQACVQKDQARAYKAYNAALKSLAAWQETTG 175
            L P    AKSG+S K+S+FGV G SSPF A +++ G+  YK   E+E++ +   + D K  L      I +K WEDI+S +R +  DLR  Q  + +++ +++  +KA K Y  F   IE +D A  QK+  +  +A   A+K L  W    G
Sbjct:   74 LLPKNASAKSGESAKLSIFGVEGLSSPFTADLKSKGQPLYKNLNEEEISRYTKAITDGKASLSKIPGYINEKSWEDIKSLVRQRVADLRSAQKKMMASISEQRIRQKAEKLYDSFIKSIEDIDYAARQKNGDKVRQAQQQAMKLLQEWASAAG 226          
BLAST of Ggra1757.t1 vs. uniprot
Match: K8Z7P0 (Extrinsic protein in photosystem II n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z7P0_NANGC)

HSP 1 Score: 66.2 bits (160), Expect = 4.390e-10
Identity = 52/150 (34.67%), Postives = 79/150 (52.67%), Query Frame = 0
Query:   26 PFATLAKSGDSPKISVFGVGG--ASSPFDAGVQT---------GGKVQYKPFGEDEVAVFKFIVDDAKERLIGSVDSIKDKKWEDIRSQLRLQT-DLRKTQLTINSNMPDKKSEEKASKAYRVFKNDIEKLDQACVQKDQARAYKAYNAA 163
            P + LAKSG+ PK SVFG+GG  ASSPF   V T         G    +KP   D+V ++   V ++K+R+      ++ K+WE++R++L  Q  DLR++       + + K   +ASKA +    DIE L  A  +K    +  AY+ A
Sbjct:   66 PESALAKSGEGPKQSVFGLGGDAASSPFVQDVPTYSPYSPYGTGENALFKPLNADDVKLYTSKVTESKKRVDKIAKYLEKKQWEEVRTELTRQMYDLRRS----GQKLAENKQSPEASKALKSLFQDIEDLTVASRRKQVDVSQAAYSRA 211          
BLAST of Ggra1757.t1 vs. uniprot
Match: A0A7S3TE05 (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TE05_9SPIT)

HSP 1 Score: 65.1 bits (157), Expect = 8.820e-10
Identity = 60/178 (33.71%), Postives = 93/178 (52.25%), Query Frame = 0
Query:    7 SRRQALLGGA-ALLATVGLSPFATLAKSGDSPKISVFGVGGASSPFDAGVQTGGKVQYKPFG-----------EDEVAVFKFIVDDAKERLIGSVDSIKDKKWEDIRSQLRLQT-DLRKTQLTINSNMP-DKKSEEKASKAYRVFKNDIEKLDQACVQKDQARAYKAYNAALKSLAAW 170
            +RR AL   A A LA  G++  A+ AK+G+  KIS+FGVG  SSP++ G    GK     +            E +V+  K    ++ +R+      +  K W  +R +LR+Q  ++R + L IN  +P DKK  E A+ AY+ +  ++E  D AC +K+ A A K Y   L +L A+
Sbjct:   24 TRRHALSTAAGAFLAASGVAQQAS-AKAGEFGKISIFGVGDVSSPYNPGGPKAGKDATFGYAKSDGPILAEGYEADVSREKAAFLESSKRISSLQPKLDAKTWWFVRDELRVQAYNMRSSMLAINKVLPADKK--EAATAAYKKYWAEVEAFDLACAKKEPALANKEYADVLAALKAY 198          
The following BLAST results are available for this feature:
BLAST of Ggra1757.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3IMP43.220e-8676.70Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QKC09.210e-6665.70Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S1TF771.240e-2339.88Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
D5KXJ15.390e-1835.95Photosystem II extrinsic protein n=1 Tax=Galdieria... [more]
D6PTH05.500e-1835.95Photosystem II Q n=1 Tax=Galdieria sulphuraria Tax... [more]
K8Z7P04.390e-1034.67Extrinsic protein in photosystem II n=3 Tax=Monodo... [more]
A0A7S3TE058.820e-1033.71Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023222PsbQ-like domain superfamilyGENE3D1.20.120.290coord: 52..174
e-value: 4.8E-20
score: 73.7
IPR023222PsbQ-like domain superfamilySUPERFAMILY101112Oxygen-evolving enhancer protein 3,coord: 76..171
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..176
NoneNo IPR availableTMHMMTMhelixcoord: 12..31
IPR006311Twin-arginine translocation pathway, signal sequencePROSITEPS51318TATcoord: 1..31
score: 8.309802

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:554276..554806 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1757.t1Ggra1757.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 554276..554806 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1757.t1 ID=Ggra1757.t1|Name=Ggra1757.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=177bp
MSQAPVSRRQALLGGAALLATVGLSPFATLAKSGDSPKISVFGVGGASSP
FDAGVQTGGKVQYKPFGEDEVAVFKFIVDDAKERLIGSVDSIKDKKWEDI
RSQLRLQTDLRKTQLTINSNMPDKKSEEKASKAYRVFKNDIEKLDQACVQ
KDQARAYKAYNAALKSLAAWQETTGY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023222PsbQ-like_dom_sf
IPR006311TAT_signal