Ggra1757.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1757.t1
Unique NameGgra1757.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:554276..554806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704664.1
Max annot lvl2759|Eukaryota
KEGG koko:K08901
KEGG Pathwayko00195,ko01100,map00195,map01100
Evalue7.15e-18
EggNOG OGs2E8QV@1|root,2SF67@2759|Eukaryota
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1757Ggra1757Gracilaria gracilis GNS1m malegenetig00000050_pilon 554276..554806 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1757.t1.stop1Ggra1757.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 554276..554278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1757.t1.CDS1Ggra1757.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 554276..554806 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1757.t1.exon1Ggra1757.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 554276..554806 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1757.t1.start1Ggra1757.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 554804..554806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1757.t1Ggra1757.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 554276..554806 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1757.t1 ID=Ggra1757.t1|Name=Ggra1757.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=177bp
MSQAPVSRRQALLGGAALLATVGLSPFATLAKSGDSPKISVFGVGGASSP
FDAGVQTGGKVQYKPFGEDEVAVFKFIVDDAKERLIGSVDSIKDKKWEDI
RSQLRLQTDLRKTQLTINSNMPDKKSEEKASKAYRVFKNDIEKLDQACVQ
KDQARAYKAYNAALKSLAAWQETTGY*
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spliced messenger RNA

>Ggra1757.t1 ID=Ggra1757.t1|Name=Ggra1757.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00000050_pilon:554276..554806- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCAAGCGCCCGTGTCGCGACGACAAGCGTTGTTGGGAGGTGCCGC
TCTATTGGCCACTGTGGGACTTTCTCCGTTCGCCACCCTGGCAAAGAGCG
GTGATTCCCCAAAGATCTCCGTGTTTGGCGTGGGAGGAGCTTCCTCTCCG
TTTGACGCCGGCGTGCAGACAGGTGGAAAGGTACAATACAAGCCGTTCGG
AGAGGATGAAGTAGCGGTGTTCAAGTTCATTGTTGACGACGCGAAAGAGC
GTTTGATTGGATCCGTCGACTCTATTAAAGACAAGAAGTGGGAAGATATC
AGGAGTCAACTCCGACTGCAGACTGATCTGCGCAAGACTCAGTTGACGAT
AAATTCTAATATGCCGGATAAGAAGAGTGAGGAGAAGGCTAGCAAAGCCT
ATCGCGTCTTCAAGAATGACATTGAAAAACTCGATCAAGCCTGCGTGCAG
AAGGATCAGGCTCGTGCCTACAAGGCGTACAATGCCGCACTCAAGAGTCT
GGCCGCCTGGCAAGAAACCACCGGATATTAG
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protein sequence of Ggra1757.t1

>Ggra1757.t1 ID=Ggra1757.t1|Name=Ggra1757.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=177bp
MSQAPVSRRQALLGGAALLATVGLSPFATLAKSGDSPKISVFGVGGASSP
FDAGVQTGGKVQYKPFGEDEVAVFKFIVDDAKERLIGSVDSIKDKKWEDI
RSQLRLQTDLRKTQLTINSNMPDKKSEEKASKAYRVFKNDIEKLDQACVQ
KDQARAYKAYNAALKSLAAWQETTGY*
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mRNA from alignment at tig00000050_pilon:554276..554806-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1757.t1 ID=Ggra1757.t1|Name=Ggra1757.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=531bp|location=Sequence derived from alignment at tig00000050_pilon:554276..554806- (Gracilaria gracilis GNS1m male)
ATGAGTCAAGCGCCCGTGTCGCGACGACAAGCGTTGTTGGGAGGTGCCGC
TCTATTGGCCACTGTGGGACTTTCTCCGTTCGCCACCCTGGCAAAGAGCG
GTGATTCCCCAAAGATCTCCGTGTTTGGCGTGGGAGGAGCTTCCTCTCCG
TTTGACGCCGGCGTGCAGACAGGTGGAAAGGTACAATACAAGCCGTTCGG
AGAGGATGAAGTAGCGGTGTTCAAGTTCATTGTTGACGACGCGAAAGAGC
GTTTGATTGGATCCGTCGACTCTATTAAAGACAAGAAGTGGGAAGATATC
AGGAGTCAACTCCGACTGCAGACTGATCTGCGCAAGACTCAGTTGACGAT
AAATTCTAATATGCCGGATAAGAAGAGTGAGGAGAAGGCTAGCAAAGCCT
ATCGCGTCTTCAAGAATGACATTGAAAAACTCGATCAAGCCTGCGTGCAG
AAGGATCAGGCTCGTGCCTACAAGGCGTACAATGCCGCACTCAAGAGTCT
GGCCGCCTGGCAAGAAACCACCGGATATTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:554276..554806-

>Ggra1757.t1 ID=Ggra1757.t1|Name=Ggra1757.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=531bp|location=Sequence derived from alignment at tig00000050_pilon:554276..554806- (Gracilaria gracilis GNS1m male)
ATGAGTCAAGCGCCCGTGTCGCGACGACAAGCGTTGTTGGGAGGTGCCGC
TCTATTGGCCACTGTGGGACTTTCTCCGTTCGCCACCCTGGCAAAGAGCG
GTGATTCCCCAAAGATCTCCGTGTTTGGCGTGGGAGGAGCTTCCTCTCCG
TTTGACGCCGGCGTGCAGACAGGTGGAAAGGTACAATACAAGCCGTTCGG
AGAGGATGAAGTAGCGGTGTTCAAGTTCATTGTTGACGACGCGAAAGAGC
GTTTGATTGGATCCGTCGACTCTATTAAAGACAAGAAGTGGGAAGATATC
AGGAGTCAACTCCGACTGCAGACTGATCTGCGCAAGACTCAGTTGACGAT
AAATTCTAATATGCCGGATAAGAAGAGTGAGGAGAAGGCTAGCAAAGCCT
ATCGCGTCTTCAAGAATGACATTGAAAAACTCGATCAAGCCTGCGTGCAG
AAGGATCAGGCTCGTGCCTACAAGGCGTACAATGCCGCACTCAAGAGTCT
GGCCGCCTGGCAAGAAACCACCGGATATTAG
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