Ggra1741.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra1741.t1
Unique Name	Ggra1741.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	185

Homology

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BLAST of Ggra1741.t1 vs. uniprot
Match: A0A2V3IMP0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMP0_9FLOR)

HSP 1 Score: 167 bits (422), Expect = 2.310e-49
Identity = 100/186 (53.76%), Postives = 117/186 (62.90%), Query Frame = 0

Query:    1 MQSCSLRIGVLPGAAIAGILXXXXXXXXXXXXXXXRERRGLFVRRRARRRCPRCAGFGISRCTLCDGEGICSPAAKFTRFLPCXXXXXXXXXXXXXXNGSGIRPSGGMATQIEAMTIALLRCFDTVRYALMFSAIVPFQCVPPLVQPTRQNLYAMHGPLSHQPRTVGSPLL--KNFPFVPNVKRDC 184
            MQ+C+LR+G+LPGAA+ G L               RER  LFVRRRARRRCPRCAGFGISRCTLCDGEGICS   K TRFLPC     XXXXXXXXXNGSG+RPSGG+    +   IA+ RCFD  R AL+ SA+V  +   P ++   Q   A H   S    +  S  L  K  PFVP++K DC
Sbjct:    1 MQTCALRVGILPGAALGGFLGGVIVTRLTGRLSRTRERTSLFVRRRARRRCPRCAGFGISRCTLCDGEGICSYTVKVTRFLPCPLCVMXXXXXXXXXNGSGVRPSGGLRLHFDTAIIAIRRCFDQARSALLLSAVVAHEAYLPKMRVVPQAQRAQHMLQSTLQGSHTSSALFPKQGPFVPDMKSDC 186

The following BLAST results are available for this feature:

BLAST of Ggra1741.t1 vs. uniprot

BLAST of Ggra1741.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IMP0	2.310e-49	53.76	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..29
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 30..184
None	No IPR available	TMHMM	TMhelix		coord: 9..31
IPR036410	Heat shock protein DnaJ, cysteine-rich domain superfamily	SUPERFAMILY	57938	DnaJ/Hsp40 cysteine-rich domain	coord: 46..102

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:524450..525065 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1741.t1	Ggra1741.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000050_pilon 524450..525065 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra1741.t1 ID=Ggra1741.t1|Name=Ggra1741.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=185bp
MQSCSLRIGVLPGAAIAGILGGVVVTRLTGYLSVTRERRGLFVRRRARRR
CPRCAGFGISRCTLCDGEGICSPAAKFTRFLPCPLCVMRRFIPCSMCNGS
GIRPSGGMATQIEAMTIALLRCFDTVRYALMFSAIVPFQCVPPLVQPTRQ
NLYAMHGPLSHQPRTVGSPLLKNFPFVPNVKRDC*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036410	HSP_DnaJ_Cys-rich_dom_sf