Ggra1741.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1741.t1
Unique NameGgra1741.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:524450..525065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704455.1
Max annot lvl2759|Eukaryota
Evalue2.44e-08
EggNOG OGs2CHPF@1|root,2SBJ9@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1741Ggra1741Gracilaria gracilis GNS1m malegenetig00000050_pilon 524450..525065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1741.t1Ggra1741.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 524450..525065 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1741.t1.start1Ggra1741.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 524450..524452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1741.t1.CDS1Ggra1741.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 524450..524662 +
Ggra1741.t1.CDS2Ggra1741.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 524724..525065 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1741.t1.exon1Ggra1741.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 524450..524662 +
Ggra1741.t1.exon2Ggra1741.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 524724..525065 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1741.t1.intron1Ggra1741.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 524663..524723 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1741.t1.stop1Ggra1741.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 525063..525065 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1741.t1 ID=Ggra1741.t1|Name=Ggra1741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=185bp
MQSCSLRIGVLPGAAIAGILGGVVVTRLTGYLSVTRERRGLFVRRRARRR
CPRCAGFGISRCTLCDGEGICSPAAKFTRFLPCPLCVMRRFIPCSMCNGS
GIRPSGGMATQIEAMTIALLRCFDTVRYALMFSAIVPFQCVPPLVQPTRQ
NLYAMHGPLSHQPRTVGSPLLKNFPFVPNVKRDC*
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spliced messenger RNA

>Ggra1741.t1 ID=Ggra1741.t1|Name=Ggra1741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00000050_pilon:524450..525065+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAGCTGCTCCCTTCGCATCGGCGTTCTACCCGGCGCAGCAATTGC
AGGCATCTTGGGTGGCGTAGTCGTGACAAGACTCACCGGCTATTTATCCG
TCACAAGGGAGCGGAGAGGTTTGTTTGTACGGCGAAGAGCAAGAAGACGA
TGCCCACGCTGTGCTGGCTTCGGAATTTCGCGCTGCACTCTATGTGACGG
TGAAGGTATTTGTTCACCCGCCGCTAAGTTCACGCGTTTCCTACCATGTC
CTTTGTGCGTGATGCGTCGATTCATCCCATGTTCCATGTGCAACGGTTCT
GGGATTCGCCCATCGGGCGGCATGGCCACACAGATAGAAGCGATGACTAT
CGCTCTTCTTCGGTGCTTTGATACGGTACGATATGCGCTTATGTTCTCAG
CAATCGTGCCGTTCCAATGTGTTCCGCCGCTTGTGCAACCAACACGCCAA
AACCTGTATGCAATGCACGGCCCGCTGTCGCACCAACCCCGCACGGTCGG
CAGCCCGCTGTTGAAAAACTTTCCATTCGTACCCAATGTGAAACGCGATT
GCTGA
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protein sequence of Ggra1741.t1

>Ggra1741.t1 ID=Ggra1741.t1|Name=Ggra1741.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=185bp
MQSCSLRIGVLPGAAIAGILGGVVVTRLTGYLSVTRERRGLFVRRRARRR
CPRCAGFGISRCTLCDGEGICSPAAKFTRFLPCPLCVMRRFIPCSMCNGS
GIRPSGGMATQIEAMTIALLRCFDTVRYALMFSAIVPFQCVPPLVQPTRQ
NLYAMHGPLSHQPRTVGSPLLKNFPFVPNVKRDC*
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mRNA from alignment at tig00000050_pilon:524450..525065+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1741.t1 ID=Ggra1741.t1|Name=Ggra1741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=616bp|location=Sequence derived from alignment at tig00000050_pilon:524450..525065+ (Gracilaria gracilis GNS1m male)
ATGCAAAGCTGCTCCCTTCGCATCGGCGTTCTACCCGGCGCAGCAATTGC
AGGCATCTTGGGTGGCGTAGTCGTGACAAGACTCACCGGCTATTTATCCG
TCACAAGGGAGCGGAGAGGTTTGTTTGTACGGCGAAGAGCAAGAAGACGA
TGCCCACGCTGTGCTGGCTTCGGAATTTCGCGCTGCACTCTATGTGACGG
TGAAGGTATTTGTGTGCGTTCGAATGTCAAAAGCGTTTCGTTTAGCGACG
AGCACTTATCTAACCATTGAGTAGTCACCCGCCGCTAAGTTCACGCGTTT
CCTACCATGTCCTTTGTGCGTGATGCGTCGATTCATCCCATGTTCCATGT
GCAACGGTTCTGGGATTCGCCCATCGGGCGGCATGGCCACACAGATAGAA
GCGATGACTATCGCTCTTCTTCGGTGCTTTGATACGGTACGATATGCGCT
TATGTTCTCAGCAATCGTGCCGTTCCAATGTGTTCCGCCGCTTGTGCAAC
CAACACGCCAAAACCTGTATGCAATGCACGGCCCGCTGTCGCACCAACCC
CGCACGGTCGGCAGCCCGCTGTTGAAAAACTTTCCATTCGTACCCAATGT
GAAACGCGATTGCTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:524450..525065+

>Ggra1741.t1 ID=Ggra1741.t1|Name=Ggra1741.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=555bp|location=Sequence derived from alignment at tig00000050_pilon:524450..525065+ (Gracilaria gracilis GNS1m male)
ATGCAAAGCTGCTCCCTTCGCATCGGCGTTCTACCCGGCGCAGCAATTGC
AGGCATCTTGGGTGGCGTAGTCGTGACAAGACTCACCGGCTATTTATCCG
TCACAAGGGAGCGGAGAGGTTTGTTTGTACGGCGAAGAGCAAGAAGACGA
TGCCCACGCTGTGCTGGCTTCGGAATTTCGCGCTGCACTCTATGTGACGG
TGAAGGTATTTGTTCACCCGCCGCTAAGTTCACGCGTTTCCTACCATGTC
CTTTGTGCGTGATGCGTCGATTCATCCCATGTTCCATGTGCAACGGTTCT
GGGATTCGCCCATCGGGCGGCATGGCCACACAGATAGAAGCGATGACTAT
CGCTCTTCTTCGGTGCTTTGATACGGTACGATATGCGCTTATGTTCTCAG
CAATCGTGCCGTTCCAATGTGTTCCGCCGCTTGTGCAACCAACACGCCAA
AACCTGTATGCAATGCACGGCCCGCTGTCGCACCAACCCCGCACGGTCGG
CAGCCCGCTGTTGAAAAACTTTCCATTCGTACCCAATGTGAAACGCGATT
GCTGA
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