Ggra1733.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1733.t1
Unique NameGgra1733.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length201
Homology
BLAST of Ggra1733.t1 vs. uniprot
Match: A0A2V3ISK3 (V-type proton ATPase subunit c''2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISK3_9FLOR)

HSP 1 Score: 332 bits (850), Expect = 6.310e-114
Identity = 178/197 (90.36%), Postives = 185/197 (93.91%), Query Frame = 0
Query:    6 TNGTDVAAFI--PETVSEAIFASCWWFWYMPACYGYYFALFRGISPYLWSALGVVFSIGVSVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIFAEACAIYGVIMAIILQAKIVESETGLPSAYAGYAIFAAGATVGLSNLFCGLSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASKVIV 200
            +N TD  + +   +TVSEAI+ SCWWFW+MPACYGYYF LFR ISPY WSALGVVFSIGVSVLGSAWGIFITG+SLLSAAIKHPRISSKNLVSVIFAEACAIYGVIMAIILQAKIVESETG PSAYAGYAIFAAGATVGLSNLFCGLSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASKVIV
Sbjct:    7 SNATDATSTLLASQTVSEAIYTSCWWFWFMPACYGYYFDLFRQISPYFWSALGVVFSIGVSVLGSAWGIFITGSSLLSAAIKHPRISSKNLVSVIFAEACAIYGVIMAIILQAKIVESETGSPSAYAGYAIFAAGATVGLSNLFCGLSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASKVIV 203          
BLAST of Ggra1733.t1 vs. uniprot
Match: R7QV90 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QV90_CHOCR)

HSP 1 Score: 310 bits (794), Expect = 2.550e-105
Identity = 167/199 (83.92%), Postives = 175/199 (87.94%), Query Frame = 0
Query:    2 SAPATNGTD--VAAFIPETVSEAIFASCWWFWYMPACYGYYFALFRGISPYLWSALGVVFSIGVSVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIFAEACAIYGVIMAIILQAKIVESETGLPSAYAGYAIFAAGATVGLSNLFCGLSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASKV 198
            S   TN T   V     E V  +I ASCWWFW+MPACY YY ALF  ISPYLWS +GVV SIGVSVLGSAWGIFITG+SLLSAAIKHPRISSKNLVSVIFAEACAIYGVIMAIILQAKIVESETG PSA+AGYA+FAAGATVGLSNLFCGLSVGVVGSSCALSDAQN +LFVKILIVEIFASALGLFGVI+GIIMASKV
Sbjct:    8 SVAVTNSTADLVTTSTSEIVEYSILASCWWFWFMPACYPYYMALFESISPYLWSVMGVVLSIGVSVLGSAWGIFITGSSLLSAAIKHPRISSKNLVSVIFAEACAIYGVIMAIILQAKIVESETGTPSAFAGYALFAAGATVGLSNLFCGLSVGVVGSSCALSDAQNGALFVKILIVEIFASALGLFGVIVGIIMASKV 206          
BLAST of Ggra1733.t1 vs. uniprot
Match: A0A1X6PC88 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PC88_PORUM)

HSP 1 Score: 248 bits (633), Expect = 8.040e-81
Identity = 131/180 (72.78%), Postives = 155/180 (86.11%), Query Frame = 0
Query:   18 TVSEAIFASCWWFWYMPACYGYYFALFRGISPYLWSALGVVFSIGVSVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIFAEACAIYGVIMAIILQAKIVESETG-LPSAYAGYAIFAAGATVGLSNLFCGLSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMAS 196
            T S + F+SC +FW++PACY  ++ALF  ISPYL++++G   +IG+SVLG+AWGIFITG SLL AAIKHPRI SKNL+SVIF EA AIYGVIMAII+Q++IVE+E G LPSAY GYA+FAAG TVG SNLFCGL VGV GSSCAL+DAQN +LFVKILIVEIF SALGLFGVI+GII+AS
Sbjct:   28 TTSGSFFSSCIFFWFIPACYASWWALFTSISPYLFASVGTALAIGLSVLGAAWGIFITGVSLLGAAIKHPRIQSKNLISVIFCEAVAIYGVIMAIIMQSRIVEAEDGGLPSAYLGYALFAAGLTVGFSNLFCGLCVGVTGSSCALADAQNGTLFVKILIVEIFGSALGLFGVIVGIILAS 207          
BLAST of Ggra1733.t1 vs. uniprot
Match: A0A7S0T6K2 (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6K2_9RHOD)

HSP 1 Score: 243 bits (620), Expect = 6.450e-79
Identity = 125/179 (69.83%), Postives = 147/179 (82.12%), Query Frame = 0
Query:   19 VSEAIFASCWWFWYMPACYGYYFALFRGISPYLWSALGVVFSIGVSVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIFAEACAIYGVIMAIILQAKIVESETGLPSAYAGYAIFAAGATVGLSNLFCGLSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASK 197
            + E+ FASCW+FW++P CY YY+ LF  ISP+ ++ +G   +IGVSVLG+AWGIFITG+SL+ AAIK PRI SKNL+SVIF EA AIYGVIMAII+Q KI ++    PSAYAGY +FA G TVG +NLFCGL VGV GS+CALSDAQN +LFVKILIVEIF SALGLFGVIIGIIMA K
Sbjct:   21 MGESYFASCWFFWFLPECYPYYWKLFESISPFAFATIGTALAIGVSVLGAAWGIFITGSSLVGAAIKAPRIQSKNLISVIFCEAVAIYGVIMAIIMQTKIADAAGTAPSAYAGYGLFATGLTVGFANLFCGLCVGVTGSACALSDAQNPALFVKILIVEIFGSALGLFGVIIGIIMAGK 199          
BLAST of Ggra1733.t1 vs. uniprot
Match: A0A5J4YI59 (V-type proton ATPase subunit c''2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YI59_PORPP)

HSP 1 Score: 241 bits (615), Expect = 1.970e-78
Identity = 124/177 (70.06%), Postives = 148/177 (83.62%), Query Frame = 0
Query:   21 EAIFASCWWFWYMPACYGYYFALFRGISPYLWSALGVVFSIGVSVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIFAEACAIYGVIMAIILQAKIVESETGLPSAYAGYAIFAAGATVGLSNLFCGLSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASK 197
            EA+F +CW+FW+MP CY Y++ LF  ISPY+++ LG   +IGVSVLG+AWGIFITG+SL+ AAIK PRI SKNL+SVIF EA AIYGVIMAII+Q KI E++   PSA+AGY +FA G TVG +NLFCGL VG+ GSSCAL+DAQN +LFVKILIVEIF SALGLFGVI+GIIMA K
Sbjct:    5 EALFMNCWFFWFMPQCYEYWWQLFESISPYMFATLGCALAIGVSVLGAAWGIFITGSSLVGAAIKAPRIQSKNLISVIFCEAVAIYGVIMAIIMQTKIAEADA-TPSAFAGYGLFATGLTVGFANLFCGLCVGITGSSCALADAQNPALFVKILIVEIFGSALGLFGVIVGIIMAGK 180          
BLAST of Ggra1733.t1 vs. uniprot
Match: A0A6T6KT33 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6KT33_9RHOD)

HSP 1 Score: 207 bits (528), Expect = 1.650e-65
Identity = 112/156 (71.79%), Postives = 130/156 (83.33%), Query Frame = 0
Query:   43 LFRGISPYLWSALGVVFSIGVSVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIFAEACAIYGVIMAIILQAKIVESETGL-PSAYAGYAIFAAGATVGLSNLFCGLSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASK 197
            LF  I PY+W+ +G   +IG+SVLG+AWGIFITG+SL+ AAI+ PRI SKNL+SVIF EA AIYGVIMAII+Q KIV++  G  PS +AGY +FA G TVGL+NLFCGL VGV GSSCAL+DAQN +LFVKILIVEIF SALGLFGVIIGIIMA K
Sbjct:    4 LFVQIDPYMWAGVGTAVTIGISVLGAAWGIFITGSSLVGAAIRAPRIQSKNLISVIFCEAVAIYGVIMAIIMQTKIVDAAEGAEPSFFAGYGLFATGLTVGLANLFCGLCVGVTGSSCALADAQNPALFVKILIVEIFGSALGLFGVIIGIIMAGK 159          
BLAST of Ggra1733.t1 vs. uniprot
Match: A0A7J7IJL4 (ATPase, H transporting, lysosomal 21kDa, V0 subunit b n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJL4_9RHOD)

HSP 1 Score: 207 bits (527), Expect = 6.030e-65
Identity = 111/174 (63.79%), Postives = 140/174 (80.46%), Query Frame = 0
Query:   27 CWWFWYMPACYGYYFALFRGISPYLWSALGVVFSIGVSVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIFAEACAIYGVIMAIILQAKI---VESETGLPSAYAGYAIFAAGATVGLSNLFCGLSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASK 197
            C W W++P C   +  LF  ISPY ++ +GV F+IG+SVLG+AWGIF+TG+SL+ A+I  PRI+SKNLVSVIF EA AIYG+I+AI++  +I     +ET   + Y GYA+FAAG  VGLSNLFCGLS+GV GSSCAL+DAQ+A+LFVK+LIVEIFASALGLFGVI GII++SK
Sbjct:    9 CLWRWFLPDCLELFGDLFGQISPYWFAYVGVAFAIGLSVLGAAWGIFVTGSSLVGASIHAPRITSKNLVSVIFCEAVAIYGIIVAIVMATRIGYSAHAETDTVTKYGGYALFAAGLVVGLSNLFCGLSIGVTGSSCALADAQDATLFVKLLIVEIFASALGLFGVIAGIIISSK 182          
BLAST of Ggra1733.t1 vs. uniprot
Match: M1V7B0 (V-type ATPase V0 subunit c n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V7B0_CYAM1)

HSP 1 Score: 203 bits (517), Expect = 2.190e-63
Identity = 110/175 (62.86%), Postives = 141/175 (80.57%), Query Frame = 0
Query:   26 SCWWFWYMPACYGYYFALFRGISPYLWSALGVVFSIGVSVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIFAEACAIYGVIMAIILQAKI---VESETGLPSAYAGYAIFAAGATVGLSNLFCGLSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASK 197
            +C W W +P C+G    LF  ISPY ++ +GV  +IG+SVLG+AWGIFITG+SL+ A+I+ PRI+SKNLVSVIF EA AIYG+I AI++  +I     +E+   + + GYA+FAAG  VGLSNLFCGLSVGV GSSCAL+DAQ+A++FVK+LIVEIFASALGLFGVI+GII++SK
Sbjct:   10 NCLWRWVLPECWGPLGILFEQISPYWFAYVGVALAIGLSVLGAAWGIFITGSSLVGASIQAPRITSKNLVSVIFCEAVAIYGIIAAIVMATRIGYASVAESDPVTKFGGYALFAAGLVVGLSNLFCGLSVGVTGSSCALADAQDATIFVKLLIVEIFASALGLFGVIVGIIISSK 184          
BLAST of Ggra1733.t1 vs. uniprot
Match: A0A836C3J0 (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C3J0_9CHLO)

HSP 1 Score: 201 bits (510), Expect = 3.700e-62
Identity = 111/167 (66.47%), Postives = 135/167 (80.84%), Query Frame = 0
Query:   37 YGYYFALFRGISPYLWSALGVVFSIGVSVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIFAEACAIYGVIMAIILQAKI--VESETGLPSAYA---GYAIFAAGATVGLSNLFCGLSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASKV 198
            Y + + LFR +SPY WSALGV  ++G+S+LG+AWGIFITG+SL+ AAI+ PRI+SKNL+SVIF EA AIYGVI+AIILQ KI  V+   G+   YA   GYAIF +G T G +NL CG+ VG+VGSSCALSDAQN++LFVKIL+VEIF SALGLFGVIIGIIM+  V
Sbjct:   35 YDWLWLLFRSMSPYFWSALGVALAVGMSILGAAWGIFITGSSLVGAAIRVPRITSKNLISVIFCEATAIYGVIVAIILQTKIEYVQPVDGVWDRYAMLSGYAIFGSGVTCGFANLVCGMCVGIVGSSCALSDAQNSTLFVKILVVEIFGSALGLFGVIIGIIMSGAV 201          
BLAST of Ggra1733.t1 vs. uniprot
Match: A8J588 (Vacuolar proton-ATPase subunit c'' proteolipid n=2 Tax=Chlamydomonas TaxID=3052 RepID=A8J588_CHLRE)

HSP 1 Score: 200 bits (508), Expect = 6.980e-62
Identity = 110/167 (65.87%), Postives = 135/167 (80.84%), Query Frame = 0
Query:   37 YGYYFALFRGISPYLWSALGVVFSIGVSVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIFAEACAIYGVIMAIILQAKI--VESETGLPSAYA---GYAIFAAGATVGLSNLFCGLSVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASKV 198
            Y + + LFR +SPY WSALGV  ++G+S+LG+AWGIFITG+SL+ AAI+ PRI+SKNL+SVIF EA AIYGVI+AIILQ KI  V+   G+   YA   GY+IF +G T G +NL CG+ VG+VGSSCALSDAQN++LFVKIL+VEIF SALGLFGVIIGIIM+  V
Sbjct:   35 YNWLWLLFRSMSPYFWSALGVALAVGMSILGAAWGIFITGSSLVGAAIRVPRITSKNLISVIFCEAVAIYGVIVAIILQTKIERVDPVDGVYDKYALAAGYSIFGSGVTCGFANLVCGMCVGIVGSSCALSDAQNSTLFVKILVVEIFGSALGLFGVIIGIIMSGGV 201          
The following BLAST results are available for this feature:
BLAST of Ggra1733.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISK36.310e-11490.36V-type proton ATPase subunit c''2 n=1 Tax=Gracilar... [more]
R7QV902.550e-10583.92Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6PC888.040e-8172.78Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0T6K26.450e-7969.83Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
A0A5J4YI591.970e-7870.06V-type proton ATPase subunit c''2 n=1 Tax=Porphyri... [more]
A0A6T6KT331.650e-6571.79Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7J7IJL46.030e-6563.79ATPase, H transporting, lysosomal 21kDa, V0 subuni... [more]
M1V7B02.190e-6362.86V-type ATPase V0 subunit c n=1 Tax=Cyanidioschyzon... [more]
A0A836C3J03.700e-6266.47Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A8J5886.980e-6265.87Vacuolar proton-ATPase subunit c'' proteolipid n=2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000245V-ATPase proteolipid subunitPRINTSPR00122VACATPASEcoord: 146..172
score: 36.06
coord: 68..92
score: 22.53
coord: 94..118
score: 33.79
coord: 173..196
score: 44.63
IPR002379V-ATPase proteolipid subunit C-like domainPFAMPF00137ATP-synt_Ccoord: 55..114
e-value: 4.8E-14
score: 52.4
coord: 135..194
e-value: 1.0E-11
score: 45.0
IPR035921F/V-ATP synthase subunit C superfamilyGENE3D1.20.120.610coord: 50..200
e-value: 1.9E-49
score: 169.1
IPR035921F/V-ATP synthase subunit C superfamilySUPERFAMILY81333F1F0 ATP synthase subunit Ccoord: 128..196
IPR035921F/V-ATP synthase subunit C superfamilySUPERFAMILY81333F1F0 ATP synthase subunit Ccoord: 49..116
NoneNo IPR availablePANTHERPTHR10263V-TYPE PROTON ATPASE PROTEOLIPID SUBUNITcoord: 42..198
NoneNo IPR availablePANTHERPTHR10263:SF18V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNITcoord: 42..198
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 75..93
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 173..195
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 196..200
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 22..43
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 44..49
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 154..172
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 94..116
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 128..153
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..74
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 117..127
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..21
NoneNo IPR availableCDDcd18178ATP-synt_Vo_c_ATP6F_rpt2coord: 130..194
e-value: 4.15222E-25
score: 91.0291
NoneNo IPR availableTMHMMTMhelixcoord: 52..74
NoneNo IPR availableTMHMMTMhelixcoord: 131..153
NoneNo IPR availableTMHMMTMhelixcoord: 94..116
NoneNo IPR availableTMHMMTMhelixcoord: 173..195
NoneNo IPR availableTMHMMTMhelixcoord: 13..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:496783..497385 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1733.t1Ggra1733.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 496783..497385 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1733.t1 ID=Ggra1733.t1|Name=Ggra1733.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=201bp
MSAPATNGTDVAAFIPETVSEAIFASCWWFWYMPACYGYYFALFRGISPY
LWSALGVVFSIGVSVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIFA
EACAIYGVIMAIILQAKIVESETGLPSAYAGYAIFAAGATVGLSNLFCGL
SVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASKVIV
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000245ATPase_proteolipid_csu
IPR002379ATPase_proteolipid_c-like_dom
IPR035921F/V-ATP_Csub_sf