Ggra1733.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1733.t1
Unique Name	Ggra1733.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	201

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:496783..497385 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMS332CT
PFAMs	ATP-synt_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03661
KEGG TC	3.A.2.2
KEGG Pathway	ko00190,ko01100,ko04142,ko04145,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04721,map05110,map05120,map05152,map05323
KEGG Module	M00160
GOs	GO:0000220,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0006873,GO:0006885,GO:0007035,GO:0008150,GO:0008324,GO:0008553,GO:0009987,GO:0012505,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030003,GO:0030004,GO:0030641,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0032991,GO:0033176,GO:0033177,GO:0033179,GO:0034220,GO:0036442,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044769,GO:0045851,GO:0046961,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098805,GO:0099131,GO:0099132,GO:1902600
Evalue	5.4e-64
EggNOG OGs	COG0636@1\|root,KOG0233@2759\|Eukaryota
Description	ATP hydrolysis coupled proton transport
COG category	U
BRITE	ko00000,ko00001,ko00002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1733	Ggra1733	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 496783..497385 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1733.t1.start1	Ggra1733.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 496783..496785 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1733.t1.CDS1	Ggra1733.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 496783..497385 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1733.t1.exon1	Ggra1733.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 496783..497385 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1733.t1.stop1	Ggra1733.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 497383..497385 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1733.t1	Ggra1733.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 496783..497385 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:496783..497385+
coding sequence from alignment at tig00000050_pilon:496783..497385+

mRNA sequence

>Ggra1733.t1 ID=Ggra1733.t1|Name=Ggra1733.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=201bp
MSAPATNGTDVAAFIPETVSEAIFASCWWFWYMPACYGYYFALFRGISPY
LWSALGVVFSIGVSVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIFA
EACAIYGVIMAIILQAKIVESETGLPSAYAGYAIFAAGATVGLSNLFCGL
SVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASKVIV
*

spliced messenger RNA

>Ggra1733.t1 ID=Ggra1733.t1|Name=Ggra1733.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00000050_pilon:496783..497385+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCACCCGCGACAAACGGCACCGATGTTGCAGCATTTATCCCAGA
AACCGTCAGCGAGGCTATCTTCGCCTCGTGCTGGTGGTTCTGGTACATGC
CAGCCTGCTACGGCTACTACTTCGCTCTCTTCCGTGGAATATCTCCCTAT
CTGTGGAGTGCTCTCGGCGTAGTATTTTCCATCGGTGTCTCCGTGTTGGG
CTCTGCGTGGGGCATTTTCATCACCGGAACCTCTCTTCTTTCCGCCGCTA
TTAAGCATCCAAGAATCAGTAGCAAGAACCTCGTCAGCGTCATTTTCGCC
GAAGCTTGTGCTATTTACGGTGTCATTATGGCTATTATTTTGCAAGCTAA
GATCGTGGAGTCTGAAACTGGCTTGCCATCTGCGTATGCGGGATACGCCA
TTTTTGCTGCCGGTGCTACAGTCGGTTTGTCGAACCTGTTTTGTGGTTTG
AGTGTGGGTGTTGTCGGTTCTTCTTGTGCTCTCTCCGATGCTCAGAATGC
TTCGCTTTTCGTCAAGATTCTCATCGTTGAGATTTTTGCATCTGCCTTGG
GGTTATTCGGCGTTATTATTGGCATCATCATGGCGTCAAAGGTTATTGTC
TAA

protein sequence of Ggra1733.t1

>Ggra1733.t1 ID=Ggra1733.t1|Name=Ggra1733.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=201bp
MSAPATNGTDVAAFIPETVSEAIFASCWWFWYMPACYGYYFALFRGISPY
LWSALGVVFSIGVSVLGSAWGIFITGTSLLSAAIKHPRISSKNLVSVIFA
EACAIYGVIMAIILQAKIVESETGLPSAYAGYAIFAAGATVGLSNLFCGL
SVGVVGSSCALSDAQNASLFVKILIVEIFASALGLFGVIIGIIMASKVIV
*

mRNA from alignment at tig00000050_pilon:496783..497385+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1733.t1 ID=Ggra1733.t1|Name=Ggra1733.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00000050_pilon:496783..497385+ (Gracilaria gracilis GNS1m male)
ATGTCAGCACCCGCGACAAACGGCACCGATGTTGCAGCATTTATCCCAGA
AACCGTCAGCGAGGCTATCTTCGCCTCGTGCTGGTGGTTCTGGTACATGC
CAGCCTGCTACGGCTACTACTTCGCTCTCTTCCGTGGAATATCTCCCTAT
CTGTGGAGTGCTCTCGGCGTAGTATTTTCCATCGGTGTCTCCGTGTTGGG
CTCTGCGTGGGGCATTTTCATCACCGGAACCTCTCTTCTTTCCGCCGCTA
TTAAGCATCCAAGAATCAGTAGCAAGAACCTCGTCAGCGTCATTTTCGCC
GAAGCTTGTGCTATTTACGGTGTCATTATGGCTATTATTTTGCAAGCTAA
GATCGTGGAGTCTGAAACTGGCTTGCCATCTGCGTATGCGGGATACGCCA
TTTTTGCTGCCGGTGCTACAGTCGGTTTGTCGAACCTGTTTTGTGGTTTG
AGTGTGGGTGTTGTCGGTTCTTCTTGTGCTCTCTCCGATGCTCAGAATGC
TTCGCTTTTCGTCAAGATTCTCATCGTTGAGATTTTTGCATCTGCCTTGG
GGTTATTCGGCGTTATTATTGGCATCATCATGGCGTCAAAGGTTATTGTC
TAA

Coding sequence (CDS) from alignment at tig00000050_pilon:496783..497385+

>Ggra1733.t1 ID=Ggra1733.t1|Name=Ggra1733.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=603bp|location=Sequence derived from alignment at tig00000050_pilon:496783..497385+ (Gracilaria gracilis GNS1m male)
ATGTCAGCACCCGCGACAAACGGCACCGATGTTGCAGCATTTATCCCAGA
AACCGTCAGCGAGGCTATCTTCGCCTCGTGCTGGTGGTTCTGGTACATGC
CAGCCTGCTACGGCTACTACTTCGCTCTCTTCCGTGGAATATCTCCCTAT
CTGTGGAGTGCTCTCGGCGTAGTATTTTCCATCGGTGTCTCCGTGTTGGG
CTCTGCGTGGGGCATTTTCATCACCGGAACCTCTCTTCTTTCCGCCGCTA
TTAAGCATCCAAGAATCAGTAGCAAGAACCTCGTCAGCGTCATTTTCGCC
GAAGCTTGTGCTATTTACGGTGTCATTATGGCTATTATTTTGCAAGCTAA
GATCGTGGAGTCTGAAACTGGCTTGCCATCTGCGTATGCGGGATACGCCA
TTTTTGCTGCCGGTGCTACAGTCGGTTTGTCGAACCTGTTTTGTGGTTTG
AGTGTGGGTGTTGTCGGTTCTTCTTGTGCTCTCTCCGATGCTCAGAATGC
TTCGCTTTTCGTCAAGATTCTCATCGTTGAGATTTTTGCATCTGCCTTGG
GGTTATTCGGCGTTATTATTGGCATCATCATGGCGTCAAAGGTTATTGTC
TAA