Ggra1710.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1710.t1
Unique NameGgra1710.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length491
Homology
The following BLAST results are available for this feature:
BLAST of Ggra1710.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 433..456
e-value: 0.02
score: 24.0
coord: 403..427
e-value: 8.6
score: 13.8
coord: 374..397
e-value: 0.11
score: 21.6
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 405..427
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 435..456
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 376..397
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 374..402
score: 11.426865
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 433..456
score: 11.468431
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 403..432
score: 9.909698
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 350..430
e-value: 5.9E-11
score: 44.2
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 431..463
e-value: 2.4E-6
score: 29.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 237..269
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..375
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 270..292
NoneNo IPR availablePANTHERPTHR24388ZINC FINGER PROTEINcoord: 122..468
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 408..453
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 372..423

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:428638..430110 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1710.t1Ggra1710.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 428638..430110 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1710.t1 ID=Ggra1710.t1|Name=Ggra1710.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=491bp
MSKLPKLNIEGLSHPEMDNSLISPVTPASVENEPGSGGNGFGNKRRRVGG
LPISALVNEKDDDSPVPYPGEPAALGGTEPATQARPEFPSILYQMSEFVT
QLGERAVERSLPTFNSLGLPTTEQLAQGVSRKSTDGSQSQTRASATSSSQ
MELRAHNTLPPLRALSLPTAGQGAPQEVSGKSVDGSHSCTQAPTPNFKQS
GALGHNSRSPSKTLGEPTAGEVAARKESHKPTDDGSVCGAQASTPNSTEN
VAPGQDEVVAQNNGNSLAHAESEDKPKASSRKRTRTERDMPIATAPEIET
LISTLREREQGRGQEGNNKRTPPSTNVEEDGEAITPAEPAARNLTAGVSN
ASRITKPGKQRRGRPNGDNRPRPHACPTCQRRFHQQSGVVNHYRVVHLKE
KRFECPHKCGLKFGARGDVTRHVDAVHNKFRNFECQVCGDAFARKSILTR
HCKNMHNDVFGADEAHDCVHGCVYRPKDKRGEEDKEGDQK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf