Ggra1710.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1710.t1
Unique Name	Ggra1710.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	491

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:428638..430110 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1710	Ggra1710	Gracilaria gracilis GNS1m male	gene	tig00000050_pilon 428638..430110 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1710.t1.stop1	Ggra1710.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000050_pilon 428638..428640 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1710.t1.CDS1	Ggra1710.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000050_pilon 428638..430110 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1710.t1.exon1	Ggra1710.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000050_pilon 428638..430110 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1710.t1.start1	Ggra1710.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000050_pilon 430108..430110 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1710.t1	Ggra1710.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000050_pilon 428638..430110 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000050_pilon:428638..430110-
coding sequence from alignment at tig00000050_pilon:428638..430110-

mRNA sequence

>Ggra1710.t1 ID=Ggra1710.t1|Name=Ggra1710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=491bp
MSKLPKLNIEGLSHPEMDNSLISPVTPASVENEPGSGGNGFGNKRRRVGG
LPISALVNEKDDDSPVPYPGEPAALGGTEPATQARPEFPSILYQMSEFVT
QLGERAVERSLPTFNSLGLPTTEQLAQGVSRKSTDGSQSQTRASATSSSQ
MELRAHNTLPPLRALSLPTAGQGAPQEVSGKSVDGSHSCTQAPTPNFKQS
GALGHNSRSPSKTLGEPTAGEVAARKESHKPTDDGSVCGAQASTPNSTEN
VAPGQDEVVAQNNGNSLAHAESEDKPKASSRKRTRTERDMPIATAPEIET
LISTLREREQGRGQEGNNKRTPPSTNVEEDGEAITPAEPAARNLTAGVSN
ASRITKPGKQRRGRPNGDNRPRPHACPTCQRRFHQQSGVVNHYRVVHLKE
KRFECPHKCGLKFGARGDVTRHVDAVHNKFRNFECQVCGDAFARKSILTR
HCKNMHNDVFGADEAHDCVHGCVYRPKDKRGEEDKEGDQK*

spliced messenger RNA

>Ggra1710.t1 ID=Ggra1710.t1|Name=Ggra1710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00000050_pilon:428638..430110- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAAGCTGCCGAAGCTAAACATTGAAGGTCTTTCGCACCCGGAAAT
GGACAACAGCCTCATTTCTCCTGTGACGCCGGCTTCCGTCGAGAACGAAC
CCGGTTCTGGAGGAAATGGCTTTGGAAACAAGCGCCGGCGAGTCGGTGGT
CTTCCCATCAGTGCCCTTGTTAACGAGAAGGATGATGACTCTCCGGTGCC
ATACCCCGGAGAGCCCGCGGCACTCGGGGGAACTGAGCCAGCAACTCAAG
CTCGGCCCGAGTTCCCGTCTATACTCTATCAAATGTCAGAGTTTGTAACT
CAACTTGGGGAACGGGCGGTGGAAAGAAGTCTACCGACATTCAATTCGCT
TGGGTTGCCCACGACCGAACAACTGGCACAAGGTGTGTCAAGAAAATCAA
CGGATGGCTCACAATCCCAAACACGGGCATCTGCTACCAGTTCAAGCCAG
ATGGAGCTCCGTGCTCACAACACACTTCCGCCTCTGCGGGCGCTCAGTCT
CCCGACGGCTGGGCAAGGGGCCCCTCAAGAGGTGTCCGGAAAGTCAGTAG
ATGGGTCTCACTCTTGCACACAGGCACCAACTCCGAATTTCAAGCAGAGT
GGGGCCTTGGGACACAACTCGCGGTCACCATCGAAGACGCTCGGGGAGCC
GACCGCCGGAGAGGTGGCGGCTCGAAAAGAGTCACACAAACCGACTGACG
ATGGTTCCGTCTGTGGGGCACAGGCATCAACTCCGAATTCAACGGAGAAT
GTAGCACCCGGCCAAGATGAGGTTGTTGCCCAGAACAATGGAAACAGCCT
GGCTCATGCGGAATCCGAGGACAAACCGAAGGCATCGAGTCGGAAACGCA
CACGAACCGAACGTGATATGCCGATTGCCACAGCACCGGAGATAGAAACC
CTGATCAGCACGTTGCGTGAAAGGGAACAAGGCCGGGGGCAAGAGGGCAA
CAACAAGCGGACGCCGCCGTCAACAAACGTAGAAGAAGACGGCGAGGCAA
TCACTCCTGCGGAACCAGCCGCCAGGAATTTGACCGCCGGTGTCTCGAAT
GCTTCGAGGATAACGAAGCCTGGAAAGCAGCGTCGAGGTCGCCCCAACGG
AGATAACAGACCGCGGCCTCATGCGTGCCCGACTTGTCAACGCCGGTTCC
ATCAACAAAGTGGGGTGGTGAACCATTACCGCGTGGTGCATCTCAAGGAA
AAGAGGTTTGAGTGCCCTCACAAGTGCGGGTTGAAGTTTGGGGCTCGGGG
AGATGTGACCAGGCACGTCGATGCGGTTCATAATAAGTTCCGTAACTTCG
AATGCCAAGTGTGTGGGGACGCGTTCGCTCGGAAGAGCATCTTGACACGG
CACTGCAAAAACATGCACAATGACGTGTTTGGCGCAGATGAGGCGCACGA
TTGTGTTCATGGGTGCGTGTATAGACCGAAGGACAAACGGGGGGAAGAAG
ATAAAGAAGGGGACCAGAAGTAG

protein sequence of Ggra1710.t1

>Ggra1710.t1 ID=Ggra1710.t1|Name=Ggra1710.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=491bp
MSKLPKLNIEGLSHPEMDNSLISPVTPASVENEPGSGGNGFGNKRRRVGG
LPISALVNEKDDDSPVPYPGEPAALGGTEPATQARPEFPSILYQMSEFVT
QLGERAVERSLPTFNSLGLPTTEQLAQGVSRKSTDGSQSQTRASATSSSQ
MELRAHNTLPPLRALSLPTAGQGAPQEVSGKSVDGSHSCTQAPTPNFKQS
GALGHNSRSPSKTLGEPTAGEVAARKESHKPTDDGSVCGAQASTPNSTEN
VAPGQDEVVAQNNGNSLAHAESEDKPKASSRKRTRTERDMPIATAPEIET
LISTLREREQGRGQEGNNKRTPPSTNVEEDGEAITPAEPAARNLTAGVSN
ASRITKPGKQRRGRPNGDNRPRPHACPTCQRRFHQQSGVVNHYRVVHLKE
KRFECPHKCGLKFGARGDVTRHVDAVHNKFRNFECQVCGDAFARKSILTR
HCKNMHNDVFGADEAHDCVHGCVYRPKDKRGEEDKEGDQK*

mRNA from alignment at tig00000050_pilon:428638..430110-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1710.t1 ID=Ggra1710.t1|Name=Ggra1710.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00000050_pilon:428638..430110- (Gracilaria gracilis GNS1m male)
ATGAGCAAGCTGCCGAAGCTAAACATTGAAGGTCTTTCGCACCCGGAAAT
GGACAACAGCCTCATTTCTCCTGTGACGCCGGCTTCCGTCGAGAACGAAC
CCGGTTCTGGAGGAAATGGCTTTGGAAACAAGCGCCGGCGAGTCGGTGGT
CTTCCCATCAGTGCCCTTGTTAACGAGAAGGATGATGACTCTCCGGTGCC
ATACCCCGGAGAGCCCGCGGCACTCGGGGGAACTGAGCCAGCAACTCAAG
CTCGGCCCGAGTTCCCGTCTATACTCTATCAAATGTCAGAGTTTGTAACT
CAACTTGGGGAACGGGCGGTGGAAAGAAGTCTACCGACATTCAATTCGCT
TGGGTTGCCCACGACCGAACAACTGGCACAAGGTGTGTCAAGAAAATCAA
CGGATGGCTCACAATCCCAAACACGGGCATCTGCTACCAGTTCAAGCCAG
ATGGAGCTCCGTGCTCACAACACACTTCCGCCTCTGCGGGCGCTCAGTCT
CCCGACGGCTGGGCAAGGGGCCCCTCAAGAGGTGTCCGGAAAGTCAGTAG
ATGGGTCTCACTCTTGCACACAGGCACCAACTCCGAATTTCAAGCAGAGT
GGGGCCTTGGGACACAACTCGCGGTCACCATCGAAGACGCTCGGGGAGCC
GACCGCCGGAGAGGTGGCGGCTCGAAAAGAGTCACACAAACCGACTGACG
ATGGTTCCGTCTGTGGGGCACAGGCATCAACTCCGAATTCAACGGAGAAT
GTAGCACCCGGCCAAGATGAGGTTGTTGCCCAGAACAATGGAAACAGCCT
GGCTCATGCGGAATCCGAGGACAAACCGAAGGCATCGAGTCGGAAACGCA
CACGAACCGAACGTGATATGCCGATTGCCACAGCACCGGAGATAGAAACC
CTGATCAGCACGTTGCGTGAAAGGGAACAAGGCCGGGGGCAAGAGGGCAA
CAACAAGCGGACGCCGCCGTCAACAAACGTAGAAGAAGACGGCGAGGCAA
TCACTCCTGCGGAACCAGCCGCCAGGAATTTGACCGCCGGTGTCTCGAAT
GCTTCGAGGATAACGAAGCCTGGAAAGCAGCGTCGAGGTCGCCCCAACGG
AGATAACAGACCGCGGCCTCATGCGTGCCCGACTTGTCAACGCCGGTTCC
ATCAACAAAGTGGGGTGGTGAACCATTACCGCGTGGTGCATCTCAAGGAA
AAGAGGTTTGAGTGCCCTCACAAGTGCGGGTTGAAGTTTGGGGCTCGGGG
AGATGTGACCAGGCACGTCGATGCGGTTCATAATAAGTTCCGTAACTTCG
AATGCCAAGTGTGTGGGGACGCGTTCGCTCGGAAGAGCATCTTGACACGG
CACTGCAAAAACATGCACAATGACGTGTTTGGCGCAGATGAGGCGCACGA
TTGTGTTCATGGGTGCGTGTATAGACCGAAGGACAAACGGGGGGAAGAAG
ATAAAGAAGGGGACCAGAAGTAG

Coding sequence (CDS) from alignment at tig00000050_pilon:428638..430110-

>Ggra1710.t1 ID=Ggra1710.t1|Name=Ggra1710.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1473bp|location=Sequence derived from alignment at tig00000050_pilon:428638..430110- (Gracilaria gracilis GNS1m male)
ATGAGCAAGCTGCCGAAGCTAAACATTGAAGGTCTTTCGCACCCGGAAAT
GGACAACAGCCTCATTTCTCCTGTGACGCCGGCTTCCGTCGAGAACGAAC
CCGGTTCTGGAGGAAATGGCTTTGGAAACAAGCGCCGGCGAGTCGGTGGT
CTTCCCATCAGTGCCCTTGTTAACGAGAAGGATGATGACTCTCCGGTGCC
ATACCCCGGAGAGCCCGCGGCACTCGGGGGAACTGAGCCAGCAACTCAAG
CTCGGCCCGAGTTCCCGTCTATACTCTATCAAATGTCAGAGTTTGTAACT
CAACTTGGGGAACGGGCGGTGGAAAGAAGTCTACCGACATTCAATTCGCT
TGGGTTGCCCACGACCGAACAACTGGCACAAGGTGTGTCAAGAAAATCAA
CGGATGGCTCACAATCCCAAACACGGGCATCTGCTACCAGTTCAAGCCAG
ATGGAGCTCCGTGCTCACAACACACTTCCGCCTCTGCGGGCGCTCAGTCT
CCCGACGGCTGGGCAAGGGGCCCCTCAAGAGGTGTCCGGAAAGTCAGTAG
ATGGGTCTCACTCTTGCACACAGGCACCAACTCCGAATTTCAAGCAGAGT
GGGGCCTTGGGACACAACTCGCGGTCACCATCGAAGACGCTCGGGGAGCC
GACCGCCGGAGAGGTGGCGGCTCGAAAAGAGTCACACAAACCGACTGACG
ATGGTTCCGTCTGTGGGGCACAGGCATCAACTCCGAATTCAACGGAGAAT
GTAGCACCCGGCCAAGATGAGGTTGTTGCCCAGAACAATGGAAACAGCCT
GGCTCATGCGGAATCCGAGGACAAACCGAAGGCATCGAGTCGGAAACGCA
CACGAACCGAACGTGATATGCCGATTGCCACAGCACCGGAGATAGAAACC
CTGATCAGCACGTTGCGTGAAAGGGAACAAGGCCGGGGGCAAGAGGGCAA
CAACAAGCGGACGCCGCCGTCAACAAACGTAGAAGAAGACGGCGAGGCAA
TCACTCCTGCGGAACCAGCCGCCAGGAATTTGACCGCCGGTGTCTCGAAT
GCTTCGAGGATAACGAAGCCTGGAAAGCAGCGTCGAGGTCGCCCCAACGG
AGATAACAGACCGCGGCCTCATGCGTGCCCGACTTGTCAACGCCGGTTCC
ATCAACAAAGTGGGGTGGTGAACCATTACCGCGTGGTGCATCTCAAGGAA
AAGAGGTTTGAGTGCCCTCACAAGTGCGGGTTGAAGTTTGGGGCTCGGGG
AGATGTGACCAGGCACGTCGATGCGGTTCATAATAAGTTCCGTAACTTCG
AATGCCAAGTGTGTGGGGACGCGTTCGCTCGGAAGAGCATCTTGACACGG
CACTGCAAAAACATGCACAATGACGTGTTTGGCGCAGATGAGGCGCACGA
TTGTGTTCATGGGTGCGTGTATAGACCGAAGGACAAACGGGGGGAAGAAG
ATAAAGAAGGGGACCAGAAGTAG