Ggra1686.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra1686.t1
Unique Name	Ggra1686.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	844

Homology

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BLAST of Ggra1686.t1 vs. uniprot
Match: A0A2V3IR39 (SCF E3 ubiquitin ligase complex F-box protein grrA n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR39_9FLOR)

HSP 1 Score: 842 bits (2174), Expect = 4.220e-295
Identity = 504/855 (58.95%), Postives = 582/855 (68.07%), Query Frame = 0

Query:    1 MPSQLALNSLPEDLLAHVLRFASGAQRRDNRPTPAVTLDNWRLAAVSTAFRRAYLSNLTSLSLNNPSAKRLALLGWQPLRPCTSLRHVKITPNSKLSDTEVVSLFQFLTDIGVQLKKVQISLSNRITHRALESLTESFSCSIVDLKLHVPWERRVRRRTAPPIHHNFLMAPEHPELAEDEHATPDSXXXXXXXXXXHLPPLAVPAPPQPPVAMGPQLMLPXXXXXXXXXXXXXXXXXXXXLPDL-ALPPHVFDAAAFPDAHAPQHPPPPPQQHPFDYPVLGASEPA-----VADAQPVESDNFPVDNLLLPMWDGAELPIDPFEPQ---PQSPPNPXXAHPHAAQXXXXXXXXXQPMAHMAQPVAPNAVAEHGLPQAPQPNAAQPVVEQPNAPPLEETPDGSADGQSASELPAPIEQAIQDLSEFLHQQNGLLNGQDPFMPPVENPPVENPHEMMLQLIQNFNQMQDGGAWNGDDGQQQQADQA--GDDGXXXXXQPEDNNAPP--EPNFHPALLLEHLSCRPTLTDEVLVTAVTRMPNLRSLNLDRARYITDVSVFALRNLTMLQSLRLCYNHYVTDLPLKHVLANLPNLHSLRLQDMPFIGNGSMEALCSFKKKSKLRVLELSKVGRVTDEAVKKLVNSCQNLESVHIADCPKISCETASHLSCSQSLEEIYFKPVVRYPIMNRTPVHLSCASSRLRSLTLVGCRNITLDGILALGNLPGLRQXXXXXXXXXXXXXXXXXXXXXXLDDILLQGDMHLTDLGVKVLCGRRGHRFLHLALKDRTENITYDGLDSIVTWCTSLRALEVHGMFKSDAIDRVRDCLPNTNITVAYNGGVKSFVEGRGGVWDPVIHMDE 842
            M S+ +L SLP+DLLAHVLRFASGAQRRD+ PTPAV L+ WRLAAV+TAFRRAYLSNLTSLSL N SAKRLALLGW PLR CTS+RHV ITP+S+LSD +VVSLFQFL  IG QLKKV ISLS R+T RAL +LTE F+ +IV+L +HVPW RRVRRRTAPP + +F+  P      +D  ATPD XXXXXXXXXX   PL  P   QP           X                      L A P    D    PDA           Q P D+PVL   E         ++Q  +SD  PVDNLLLPMW+   LP+DPFEP     Q+ P    A+  A+Q            A +  P+A +AVA      AP  N  Q            +T  G A   +ASE P+P+EQAIQDL  FL  Q    N   PF     +PPV NPH M+LQLIQ+FNQMQD G WNG + ++  A QA  G++G       E+ N  P  + +F   LL +HL CR TLTDE LVTA+TRMPNLR LNLDRARYITDVS FALRNLTML+SLRLC N+YVTDLPL+HVLANLP L +L LQDMPFIGNGS+EALCSFK +S+LRVLEL+ VGRVTDEAVKKLVNSCQNL SV I++CPKISCE ASHLSCS+SLEE+YFKP  R+ I +RTPVHLSCASS+LRSL LVGCRNITLDGI+ALGNLPGL+Q                      LDD+LLQGDM LTDLGVKVLCGRRGHRFLHLAL+D TEN+T D L+SIVTWCTSLR+LEVHGMFK DAIDRV +C+P+ NITV  NGG+K FVEGRGGVWDPV+  ++
Sbjct:    1 MASRFSLTSLPDDLLAHVLRFASGAQRRDSHPTPAVPLNKWRLAAVNTAFRRAYLSNLTSLSLTNASAKRLALLGWSPLRLCTSVRHVTITPDSRLSDADVVSLFQFLRSIGAQLKKVDISLSRRLTQRALMALTECFAGTIVELDIHVPWIRRVRRRTAPPPNQHFVFPPAEAGFGDD--ATPDXXXXXXXXXXXXXEPLQAPPVQQPXXXXXXXXXXXXEMMFAEPPVIEEVDFVDAGNQGLFADPAGPGDLDQDPDA----------DQLPLDFPVLPPPEHMGQQNFAFESQVAQSDTGPVDNLLLPMWEEDALPVDPFEPAVHLSQNAPAINVANYGASQDVAPAESPTSSEAAIQAPLAADAVA------APT-NGEQ------------DTAGGQALSPAASEPPSPMEQAIQDLGAFLRGQIPDDNPDIPF-----DPPVGNPHAMILQLIQDFNQMQDAGVWNGQNEEEAPAGQAEEGEEGD------ENQNENPIGDAHFQQVLLHDHLPCRSTLTDEALVTAITRMPNLRCLNLDRARYITDVSAFALRNLTMLESLRLCNNNYVTDLPLQHVLANLPKLRALHLQDMPFIGNGSIEALCSFKNRSELRVLELAHVGRVTDEAVKKLVNSCQNLASVAISECPKISCEAASHLSCSRSLEELYFKPAARFAITDRTPVHLSCASSKLRSLKLVGCRNITLDGIIALGNLPGLKQLHLVGLGPTSQDVMRVLGTFPRLDDVLLQGDMQLTDLGVKVLCGRRGHRFLHLALRDSTENLTDDALESIVTWCTSLRSLEVHGMFKPDAIDRVHECIPSANITVTCNGGMKRFVEGRGGVWDPVVQAND 813

The following BLAST results are available for this feature:

BLAST of Ggra1686.t1 vs. uniprot

BLAST of Ggra1686.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IR39	4.220e-295	58.95	SCF E3 ubiquitin ligase complex F-box protein grrA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 82..107 e-value: 120.0 score: 6.0 coord: 575..600 e-value: 190.0 score: 4.5 coord: 112..137 e-value: 40.0 score: 9.8 coord: 550..574 e-value: 580.0 score: 0.8 coord: 603..628 e-value: 13.0 score: 13.7 coord: 524..549 e-value: 0.75 score: 18.8 coord: 682..707 e-value: 1.2 score: 18.2 coord: 629..654 e-value: 30.0 score: 10.9
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 499..667 e-value: 9.6E-24 score: 85.5
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 669..818 e-value: 1.2E-13 score: 52.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 310..500
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 260..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 447..475
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 317..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..294
None	No IPR available	PANTHER	PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	coord: 508..726
None	No IPR available	PANTHER	PTHR13382:SF7	F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17	coord: 508..726
None	No IPR available	PANTHER	PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	coord: 593..820
None	No IPR available	PANTHER	PTHR13382:SF7	F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17	coord: 593..820
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 54..139
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 506..796

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:350317..352848 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1686.t1	Ggra1686.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000050_pilon 350317..352848 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra1686.t1 ID=Ggra1686.t1|Name=Ggra1686.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=844bp
MPSQLALNSLPEDLLAHVLRFASGAQRRDNRPTPAVTLDNWRLAAVSTAF
RRAYLSNLTSLSLNNPSAKRLALLGWQPLRPCTSLRHVKITPNSKLSDTE
VVSLFQFLTDIGVQLKKVQISLSNRITHRALESLTESFSCSIVDLKLHVP
WERRVRRRTAPPIHHNFLMAPEHPELAEDEHATPDSTPDNSPPASPHLPP
LAVPAPPQPPVAMGPQLMLPPPHPPQVMFAFQVDPVPEPPLPDLALPPHV
FDAAAFPDAHAPQHPPPPPQQHPFDYPVLGASEPAVADAQPVESDNFPVD
NLLLPMWDGAELPIDPFEPQPQSPPNPPPAHPHAAQHHQPPPPPQQPMAH
MAQPVAPNAVAEHGLPQAPQPNAAQPVVEQPNAPPLEETPDGSADGQSAS
ELPAPIEQAIQDLSEFLHQQNGLLNGQDPFMPPVENPPVENPHEMMLQLI
QNFNQMQDGGAWNGDDGQQQQADQAGDDGEDADDQPEDNNAPPEPNFHPA
LLLEHLSCRPTLTDEVLVTAVTRMPNLRSLNLDRARYITDVSVFALRNLT
MLQSLRLCYNHYVTDLPLKHVLANLPNLHSLRLQDMPFIGNGSMEALCSF
KKKSKLRVLELSKVGRVTDEAVKKLVNSCQNLESVHIADCPKISCETASH
LSCSQSLEEIYFKPVVRYPIMNRTPVHLSCASSRLRSLTLVGCRNITLDG
ILALGNLPGLRQLHLTGLGPVSQDVMRALGTFPRLDDILLQGDMHLTDLG
VKVLCGRRGHRFLHLALKDRTENITYDGLDSIVTWCTSLRALEVHGMFKS
DAIDRVRDCLPNTNITVAYNGGVKSFVEGRGGVWDPVIHMDEG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006553	Leu-rich_rpt_Cys-con_subtyp
IPR032675	LRR_dom_sf