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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 364733.XP_007801478.1 |
| PFAMs | F-box-like,LRR_6 |
| Max annot lvl | 4751|Fungi |
| KEGG ko | ko:K10268 |
| Evalue | 1.26e-06 |
| EggNOG OGs | KOG4341@1|root,KOG4341@2759|Eukaryota,38WZP@33154|Opisthokonta,3NU6P@4751|Fungi,3QKXZ@4890|Ascomycota,20DRV@147545|Eurotiomycetes,3MQ6R@451870|Chaetothyriomycetidae |
| Description | Leucine Rich repeat |
| COG category | S |
| BRITE | ko00000,ko04121 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra1686.t1.start1 | Ggra1686.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000050_pilon 350317..350319 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra1686.t1.stop1 | Ggra1686.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000050_pilon 352846..352848 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra1686.t1 ID=Ggra1686.t1|Name=Ggra1686.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=844bp MPSQLALNSLPEDLLAHVLRFASGAQRRDNRPTPAVTLDNWRLAAVSTAF RRAYLSNLTSLSLNNPSAKRLALLGWQPLRPCTSLRHVKITPNSKLSDTE VVSLFQFLTDIGVQLKKVQISLSNRITHRALESLTESFSCSIVDLKLHVP WERRVRRRTAPPIHHNFLMAPEHPELAEDEHATPDSTPDNSPPASPHLPP LAVPAPPQPPVAMGPQLMLPPPHPPQVMFAFQVDPVPEPPLPDLALPPHV FDAAAFPDAHAPQHPPPPPQQHPFDYPVLGASEPAVADAQPVESDNFPVD NLLLPMWDGAELPIDPFEPQPQSPPNPPPAHPHAAQHHQPPPPPQQPMAH MAQPVAPNAVAEHGLPQAPQPNAAQPVVEQPNAPPLEETPDGSADGQSAS ELPAPIEQAIQDLSEFLHQQNGLLNGQDPFMPPVENPPVENPHEMMLQLI QNFNQMQDGGAWNGDDGQQQQADQAGDDGEDADDQPEDNNAPPEPNFHPA LLLEHLSCRPTLTDEVLVTAVTRMPNLRSLNLDRARYITDVSVFALRNLT MLQSLRLCYNHYVTDLPLKHVLANLPNLHSLRLQDMPFIGNGSMEALCSF KKKSKLRVLELSKVGRVTDEAVKKLVNSCQNLESVHIADCPKISCETASH LSCSQSLEEIYFKPVVRYPIMNRTPVHLSCASSRLRSLTLVGCRNITLDG ILALGNLPGLRQLHLTGLGPVSQDVMRALGTFPRLDDILLQGDMHLTDLG VKVLCGRRGHRFLHLALKDRTENITYDGLDSIVTWCTSLRALEVHGMFKS DAIDRVRDCLPNTNITVAYNGGVKSFVEGRGGVWDPVIHMDEG* back to topspliced messenger RNA >Ggra1686.t1 ID=Ggra1686.t1|Name=Ggra1686.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2532bp|location=Sequence derived from alignment at tig00000050_pilon:350317..352848+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCGTCGCAACTGGCCCTCAACTCCCTCCCAGAGGACCTACTCGCCCA CGTCCTGCGCTTCGCCTCCGGCGCCCAGCGCCGCGACAACCGCCCCACCC CCGCCGTCACCCTGGACAACTGGAGGCTCGCTGCCGTCAGCACCGCCTTC CGCCGCGCCTACCTCTCCAACCTCACCTCCCTCTCGCTCAACAACCCCTC CGCAAAGCGCCTCGCCCTGCTGGGATGGCAGCCCCTGCGTCCGTGCACCT CGCTGCGTCACGTCAAAATCACCCCGAACAGCAAGCTGTCCGACACCGAG GTTGTATCGCTCTTCCAGTTCCTCACCGACATTGGTGTCCAACTGAAGAA GGTGCAGATCTCCTTGTCGAACCGAATCACCCACCGAGCACTCGAGTCGC TCACGGAGTCCTTCTCGTGCTCCATCGTCGACCTGAAGCTCCACGTGCCG TGGGAGCGTCGCGTGCGTCGACGAACCGCCCCGCCCATCCACCACAACTT CCTCATGGCCCCGGAGCATCCCGAGCTGGCCGAGGATGAGCACGCCACCC CGGATTCCACCCCGGACAACTCTCCACCGGCGTCTCCCCACCTCCCGCCG CTTGCCGTCCCCGCCCCTCCTCAACCGCCCGTCGCCATGGGTCCGCAGCT CATGCTGCCCCCACCACACCCGCCACAGGTCATGTTCGCCTTTCAGGTCG ACCCTGTGCCGGAGCCGCCGCTGCCCGACTTGGCGCTGCCGCCGCACGTA TTCGACGCTGCCGCCTTCCCGGATGCGCACGCGCCGCAACACCCACCGCC ACCGCCGCAGCAGCATCCGTTTGATTACCCGGTGCTCGGTGCGTCTGAAC CTGCGGTGGCCGATGCGCAGCCGGTTGAATCCGACAACTTCCCGGTCGAT AACTTGCTGCTGCCGATGTGGGATGGCGCTGAGCTGCCCATCGATCCGTT TGAACCGCAGCCACAATCAccgccgaatccaccgcctgcgcatccgcacg ccgcgcaacaccaccagccgccaccgccgccgcAACAACCCATGGCACAT ATGGCGCAGCCAGTCGCGCCGAACGCGGTGGCGGAGCACGGGCTGCCGCA AGCGCCACAGCCGAATGCTGCGCAGCCTGTGGTGGAGCAGCCGAATGCGC CGCCGCTCGAGGAAACGCCCGACGGAAGCGCCGATGGTCAGTCTGCGTCG GAACTGCCCGCCCCGATCGAACAGGCCATCCAGGACCTCAGCGAGTTCCT GCATCAGCAGAATGGCTTGCTGAATGGCCAAGATCCGTTTATGCCTCCGG TTGAAAACCCTCCGGTTGAAAACCCGCACGAGATGATGCTTCAGCTAATT CAAAACTTCAACCAGATGCAGGACGGCGGTGCGTGGAACGGCGACGATGG ACAGCAGCAGCAGGCCGATCAGGCTGGTGATGATGGCGAGGACGCTGACG ACCAGCCGGAGGACAATAATGCACCGCCGGAACCAAACTTTCACCCGGCG CTGCTGCTGGAGCACTTATCATGTCGGCCCACTCTTACAGATGAAGTGCT CGTGACGGCGGTTACGCGTATGCCAAACCTGCGGTCGCTCAATCTTGATC GCGCGCGGTACATCACGGACGTGTCAGTCTTTGCGTTGCGAAACCTCACG ATGCTGCAGAGTCTCCGTCTGTGCTACAATCACTACGTGACGGACCTTCC CTTGAAGCACGTGTTGGCGAACCTGCCCAACTTGCACTCTCTTCGGTTGC AAGATATGCCGTTCATTGGAAACGGGTCCATGGAGGCGTTGTGCTCTTTC AAGAAGAAGTCCAAATTGAGAGTGTTGGAACTTTCTAAAGTCGGAAGGGT GACGGATGAAGCTGTGAAGAAGCTTGTCAACTCGTGCCAAAATCTGGAAT CTGTTCACATTGCAGACTGTCCCAAGATCTCGTGTGAAACAGCATCCCAC TTGAGCTGCTCCCAAAGTCTAGAAGAGATCTACTTCAAGCCCGTGGTGCG TTATCCGATCATGAACCGTACACCTGTTCACTTGTCGTGCGCTTCATCGC GATTGCGATCGCTCACACTGGTTGGATGCCGAAACATCACGCTGGACGGC ATCTTAGCGCTGGGTAATCTTCCGGGACTGCGGCAGCTGCATTTGACTGG TCTTGGGCCCGTGTCACAGGATGTCATGAGGGCCTTGGGAACTTTTCCGA GATTGGATGACATCTTATTACAAGGGGATATGCATCTGACTGATTTGGGC GTGAAGGTGTTGTGTGGGAGACGCGGGCATCGATTCTTGCATCTTGCGCT GAAGGACCGAACTGAGAACATCACGTATGATGGCTTGGATAGTATTGTGA CGTGGTGCACTTCATTGCGGGCTTTAGAGGTTCATGGCATGTTCAAATCT GATGCCATTGATAGGGTGCGCGACTGTTTACCCAACACAAACATAACTGT GGCTTATAACGGCGGCGTAAAGAGCTTTGTAGAAGGGCGTGGAGGTGTTT GGGATCCGGTGATTCATATGGATGAAGGGTAG back to topprotein sequence of Ggra1686.t1 >Ggra1686.t1 ID=Ggra1686.t1|Name=Ggra1686.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=844bp
MPSQLALNSLPEDLLAHVLRFASGAQRRDNRPTPAVTLDNWRLAAVSTAF RRAYLSNLTSLSLNNPSAKRLALLGWQPLRPCTSLRHVKITPNSKLSDTE VVSLFQFLTDIGVQLKKVQISLSNRITHRALESLTESFSCSIVDLKLHVP WERRVRRRTAPPIHHNFLMAPEHPELAEDEHATPDSTPDNSPPASPHLPP LAVPAPPQPPVAMGPQLMLPPPHPPQVMFAFQVDPVPEPPLPDLALPPHV FDAAAFPDAHAPQHPPPPPQQHPFDYPVLGASEPAVADAQPVESDNFPVD NLLLPMWDGAELPIDPFEPQPQSPPNPPPAHPHAAQHHQPPPPPQQPMAH MAQPVAPNAVAEHGLPQAPQPNAAQPVVEQPNAPPLEETPDGSADGQSAS ELPAPIEQAIQDLSEFLHQQNGLLNGQDPFMPPVENPPVENPHEMMLQLI QNFNQMQDGGAWNGDDGQQQQADQAGDDGEDADDQPEDNNAPPEPNFHPA LLLEHLSCRPTLTDEVLVTAVTRMPNLRSLNLDRARYITDVSVFALRNLT MLQSLRLCYNHYVTDLPLKHVLANLPNLHSLRLQDMPFIGNGSMEALCSF KKKSKLRVLELSKVGRVTDEAVKKLVNSCQNLESVHIADCPKISCETASH LSCSQSLEEIYFKPVVRYPIMNRTPVHLSCASSRLRSLTLVGCRNITLDG ILALGNLPGLRQLHLTGLGPVSQDVMRALGTFPRLDDILLQGDMHLTDLG VKVLCGRRGHRFLHLALKDRTENITYDGLDSIVTWCTSLRALEVHGMFKS DAIDRVRDCLPNTNITVAYNGGVKSFVEGRGGVWDPVIHMDEG* back to topmRNA from alignment at tig00000050_pilon:350317..352848+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra1686.t1 ID=Ggra1686.t1|Name=Ggra1686.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2532bp|location=Sequence derived from alignment at tig00000050_pilon:350317..352848+ (Gracilaria gracilis GNS1m male) ATGCCGTCGCAACTGGCCCTCAACTCCCTCCCAGAGGACCTACTCGCCCA
CGTCCTGCGCTTCGCCTCCGGCGCCCAGCGCCGCGACAACCGCCCCACCC
CCGCCGTCACCCTGGACAACTGGAGGCTCGCTGCCGTCAGCACCGCCTTC
CGCCGCGCCTACCTCTCCAACCTCACCTCCCTCTCGCTCAACAACCCCTC
CGCAAAGCGCCTCGCCCTGCTGGGATGGCAGCCCCTGCGTCCGTGCACCT
CGCTGCGTCACGTCAAAATCACCCCGAACAGCAAGCTGTCCGACACCGAG
GTTGTATCGCTCTTCCAGTTCCTCACCGACATTGGTGTCCAACTGAAGAA
GGTGCAGATCTCCTTGTCGAACCGAATCACCCACCGAGCACTCGAGTCGC
TCACGGAGTCCTTCTCGTGCTCCATCGTCGACCTGAAGCTCCACGTGCCG
TGGGAGCGTCGCGTGCGTCGACGAACCGCCCCGCCCATCCACCACAACTT
CCTCATGGCCCCGGAGCATCCCGAGCTGGCCGAGGATGAGCACGCCACCC
CGGATTCCACCCCGGACAACTCTCCACCGGCGTCTCCCCACCTCCCGCCG
CTTGCCGTCCCCGCCCCTCCTCAACCGCCCGTCGCCATGGGTCCGCAGCT
CATGCTGCCCCCACCACACCCGCCACAGGTCATGTTCGCCTTTCAGGTCG
ACCCTGTGCCGGAGCCGCCGCTGCCCGACTTGGCGCTGCCGCCGCACGTA
TTCGACGCTGCCGCCTTCCCGGATGCGCACGCGCCGCAACACCCACCGCC
ACCGCCGCAGCAGCATCCGTTTGATTACCCGGTGCTCGGTGCGTCTGAAC
CTGCGGTGGCCGATGCGCAGCCGGTTGAATCCGACAACTTCCCGGTCGAT
AACTTGCTGCTGCCGATGTGGGATGGCGCTGAGCTGCCCATCGATCCGTT
TGAACCGCAGCCACAATCAccgccgaatccaccgcctgcgcatccgcacg
ccgcgcaacaccaccagccgccaccgccgccgcAACAACCCATGGCACAT
ATGGCGCAGCCAGTCGCGCCGAACGCGGTGGCGGAGCACGGGCTGCCGCA
AGCGCCACAGCCGAATGCTGCGCAGCCTGTGGTGGAGCAGCCGAATGCGC
CGCCGCTCGAGGAAACGCCCGACGGAAGCGCCGATGGTCAGTCTGCGTCG
GAACTGCCCGCCCCGATCGAACAGGCCATCCAGGACCTCAGCGAGTTCCT
GCATCAGCAGAATGGCTTGCTGAATGGCCAAGATCCGTTTATGCCTCCGG
TTGAAAACCCTCCGGTTGAAAACCCGCACGAGATGATGCTTCAGCTAATT
CAAAACTTCAACCAGATGCAGGACGGCGGTGCGTGGAACGGCGACGATGG
ACAGCAGCAGCAGGCCGATCAGGCTGGTGATGATGGCGAGGACGCTGACG
ACCAGCCGGAGGACAATAATGCACCGCCGGAACCAAACTTTCACCCGGCG
CTGCTGCTGGAGCACTTATCATGTCGGCCCACTCTTACAGATGAAGTGCT
CGTGACGGCGGTTACGCGTATGCCAAACCTGCGGTCGCTCAATCTTGATC
GCGCGCGGTACATCACGGACGTGTCAGTCTTTGCGTTGCGAAACCTCACG
ATGCTGCAGAGTCTCCGTCTGTGCTACAATCACTACGTGACGGACCTTCC
CTTGAAGCACGTGTTGGCGAACCTGCCCAACTTGCACTCTCTTCGGTTGC
AAGATATGCCGTTCATTGGAAACGGGTCCATGGAGGCGTTGTGCTCTTTC
AAGAAGAAGTCCAAATTGAGAGTGTTGGAACTTTCTAAAGTCGGAAGGGT
GACGGATGAAGCTGTGAAGAAGCTTGTCAACTCGTGCCAAAATCTGGAAT
CTGTTCACATTGCAGACTGTCCCAAGATCTCGTGTGAAACAGCATCCCAC
TTGAGCTGCTCCCAAAGTCTAGAAGAGATCTACTTCAAGCCCGTGGTGCG
TTATCCGATCATGAACCGTACACCTGTTCACTTGTCGTGCGCTTCATCGC
GATTGCGATCGCTCACACTGGTTGGATGCCGAAACATCACGCTGGACGGC
ATCTTAGCGCTGGGTAATCTTCCGGGACTGCGGCAGCTGCATTTGACTGG
TCTTGGGCCCGTGTCACAGGATGTCATGAGGGCCTTGGGAACTTTTCCGA
GATTGGATGACATCTTATTACAAGGGGATATGCATCTGACTGATTTGGGC
GTGAAGGTGTTGTGTGGGAGACGCGGGCATCGATTCTTGCATCTTGCGCT
GAAGGACCGAACTGAGAACATCACGTATGATGGCTTGGATAGTATTGTGA
CGTGGTGCACTTCATTGCGGGCTTTAGAGGTTCATGGCATGTTCAAATCT
GATGCCATTGATAGGGTGCGCGACTGTTTACCCAACACAAACATAACTGT
GGCTTATAACGGCGGCGTAAAGAGCTTTGTAGAAGGGCGTGGAGGTGTTT
GGGATCCGGTGATTCATATGGATGAAGGGTAG back to topCoding sequence (CDS) from alignment at tig00000050_pilon:350317..352848+ >Ggra1686.t1 ID=Ggra1686.t1|Name=Ggra1686.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2532bp|location=Sequence derived from alignment at tig00000050_pilon:350317..352848+ (Gracilaria gracilis GNS1m male) ATGCCGTCGCAACTGGCCCTCAACTCCCTCCCAGAGGACCTACTCGCCCA CGTCCTGCGCTTCGCCTCCGGCGCCCAGCGCCGCGACAACCGCCCCACCC CCGCCGTCACCCTGGACAACTGGAGGCTCGCTGCCGTCAGCACCGCCTTC CGCCGCGCCTACCTCTCCAACCTCACCTCCCTCTCGCTCAACAACCCCTC CGCAAAGCGCCTCGCCCTGCTGGGATGGCAGCCCCTGCGTCCGTGCACCT CGCTGCGTCACGTCAAAATCACCCCGAACAGCAAGCTGTCCGACACCGAG GTTGTATCGCTCTTCCAGTTCCTCACCGACATTGGTGTCCAACTGAAGAA GGTGCAGATCTCCTTGTCGAACCGAATCACCCACCGAGCACTCGAGTCGC TCACGGAGTCCTTCTCGTGCTCCATCGTCGACCTGAAGCTCCACGTGCCG TGGGAGCGTCGCGTGCGTCGACGAACCGCCCCGCCCATCCACCACAACTT CCTCATGGCCCCGGAGCATCCCGAGCTGGCCGAGGATGAGCACGCCACCC CGGATTCCACCCCGGACAACTCTCCACCGGCGTCTCCCCACCTCCCGCCG CTTGCCGTCCCCGCCCCTCCTCAACCGCCCGTCGCCATGGGTCCGCAGCT CATGCTGCCCCCACCACACCCGCCACAGGTCATGTTCGCCTTTCAGGTCG ACCCTGTGCCGGAGCCGCCGCTGCCCGACTTGGCGCTGCCGCCGCACGTA TTCGACGCTGCCGCCTTCCCGGATGCGCACGCGCCGCAACACCCACCGCC ACCGCCGCAGCAGCATCCGTTTGATTACCCGGTGCTCGGTGCGTCTGAAC CTGCGGTGGCCGATGCGCAGCCGGTTGAATCCGACAACTTCCCGGTCGAT AACTTGCTGCTGCCGATGTGGGATGGCGCTGAGCTGCCCATCGATCCGTT TGAACCGCAGCCACAATCAccgccgaatccaccgcctgcgcatccgcacg ccgcgcaacaccaccagccgccaccgccgccgcAACAACCCATGGCACAT ATGGCGCAGCCAGTCGCGCCGAACGCGGTGGCGGAGCACGGGCTGCCGCA AGCGCCACAGCCGAATGCTGCGCAGCCTGTGGTGGAGCAGCCGAATGCGC CGCCGCTCGAGGAAACGCCCGACGGAAGCGCCGATGGTCAGTCTGCGTCG GAACTGCCCGCCCCGATCGAACAGGCCATCCAGGACCTCAGCGAGTTCCT GCATCAGCAGAATGGCTTGCTGAATGGCCAAGATCCGTTTATGCCTCCGG TTGAAAACCCTCCGGTTGAAAACCCGCACGAGATGATGCTTCAGCTAATT CAAAACTTCAACCAGATGCAGGACGGCGGTGCGTGGAACGGCGACGATGG ACAGCAGCAGCAGGCCGATCAGGCTGGTGATGATGGCGAGGACGCTGACG ACCAGCCGGAGGACAATAATGCACCGCCGGAACCAAACTTTCACCCGGCG CTGCTGCTGGAGCACTTATCATGTCGGCCCACTCTTACAGATGAAGTGCT CGTGACGGCGGTTACGCGTATGCCAAACCTGCGGTCGCTCAATCTTGATC GCGCGCGGTACATCACGGACGTGTCAGTCTTTGCGTTGCGAAACCTCACG ATGCTGCAGAGTCTCCGTCTGTGCTACAATCACTACGTGACGGACCTTCC CTTGAAGCACGTGTTGGCGAACCTGCCCAACTTGCACTCTCTTCGGTTGC AAGATATGCCGTTCATTGGAAACGGGTCCATGGAGGCGTTGTGCTCTTTC AAGAAGAAGTCCAAATTGAGAGTGTTGGAACTTTCTAAAGTCGGAAGGGT GACGGATGAAGCTGTGAAGAAGCTTGTCAACTCGTGCCAAAATCTGGAAT CTGTTCACATTGCAGACTGTCCCAAGATCTCGTGTGAAACAGCATCCCAC TTGAGCTGCTCCCAAAGTCTAGAAGAGATCTACTTCAAGCCCGTGGTGCG TTATCCGATCATGAACCGTACACCTGTTCACTTGTCGTGCGCTTCATCGC GATTGCGATCGCTCACACTGGTTGGATGCCGAAACATCACGCTGGACGGC ATCTTAGCGCTGGGTAATCTTCCGGGACTGCGGCAGCTGCATTTGACTGG TCTTGGGCCCGTGTCACAGGATGTCATGAGGGCCTTGGGAACTTTTCCGA GATTGGATGACATCTTATTACAAGGGGATATGCATCTGACTGATTTGGGC GTGAAGGTGTTGTGTGGGAGACGCGGGCATCGATTCTTGCATCTTGCGCT GAAGGACCGAACTGAGAACATCACGTATGATGGCTTGGATAGTATTGTGA CGTGGTGCACTTCATTGCGGGCTTTAGAGGTTCATGGCATGTTCAAATCT GATGCCATTGATAGGGTGCGCGACTGTTTACCCAACACAAACATAACTGT GGCTTATAACGGCGGCGTAAAGAGCTTTGTAGAAGGGCGTGGAGGTGTTT GGGATCCGGTGATTCATATGGATGAAGGGTAG back to top
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