Ggra1660.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1660.t1
Unique NameGgra1660.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length305
Homology
[Close]
BLAST of Ggra1660.t1 vs. uniprot
Match: A0A2V3IR71 (Lon N-terminal domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IR71_9FLOR)

HSP 1 Score: 365 bits (937), Expect = 1.140e-123
Identity = 178/250 (71.20%), Postives = 216/250 (86.40%), Query Frame = 0 
Query:   52 DVRNMCVLALPMTSGADVIFPGGSQLLSVPHEAADRLLRTVCENDPPEFVFVCVNAWGDPGEVGTLCLIDDVHIDHAQDKATLLCSGISRLRLLRFDDQMQNAEVQVFTDDEPTPDSVESISEKEQHLVSTMTQIVQLSIKISEGKDEHQRALNDTLQRVRAFCGEMDDEESQKLLQPWILKLSPHLRRELFSFIVTDLLSISFMDRKRMLMSTDTGERLEHALQGLEPYVKELAAKGAIVSALGQPEDQ 301
            DVRN+ V+ALPMTSGAD+IFPG SQLLS+P E A RLLRTVC++DPPEF ++C+NAWGDP EV TLC+IDDVHI  A +K+TLLC+GISRL +L  D++M NA  Q+F D+ P  D + +I+  E+ L+STMTQIVQLSIKISEG+DEHQRAL DTLQRVRAFCG++ +E+S+KLLQPWIL+LSPHLRRE+ SFIV DLLSISFMDR+++L +TDTG RLEHAL+GLEPYVKELAAKGAIVSALG+  +Q
Sbjct:   66 DVRNLTVVALPMTSGADLIFPGASQLLSLPAETAHRLLRTVCDSDPPEFAYMCLNAWGDPSEVATLCVIDDVHISPADEKSTLLCTGISRLHILNIDEKMHNARAQLFYDEPPKEDQLAAITRLEEQLISTMTQIVQLSIKISEGQDEHQRALADTLQRVRAFCGQIGEEQSRKLLQPWILQLSPHLRREILSFIVIDLLSISFMDRRKLLNTTDTGHRLEHALRGLEPYVKELAAKGAIVSALGKEGEQ 315
The following BLAST results are available for this feature:
BLAST of Ggra1660.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IR711.140e-12371.20Lon N-terminal domain-containing protein n=1 Tax=G... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003111Lon, substrate-binding domainPFAMPF02190LON_substr_bdgcoord: 68..278
e-value: 3.7E-7
score: 30.2
NoneNo IPR availableGENE3D2.30.130.40coord: 37..159
e-value: 4.4E-8
score: 34.8
NoneNo IPR availablePANTHERPTHR46732ATP-DEPENDENT PROTEASE LA (LON) DOMAIN PROTEINcoord: 44..288
IPR015947PUA-like superfamilySUPERFAMILY88697PUA domain-likecoord: 69..276

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:284442..285356 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1660.t1Ggra1660.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 284442..285356 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1660.t1 ID=Ggra1660.t1|Name=Ggra1660.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=305bp
MPTIPGLCPSNTLHRSLHSRHQHLKYQNIRRPRPACLNLQACASSTQASQ
EDVRNMCVLALPMTSGADVIFPGGSQLLSVPHEAADRLLRTVCENDPPEF
VFVCVNAWGDPGEVGTLCLIDDVHIDHAQDKATLLCSGISRLRLLRFDDQ
MQNAEVQVFTDDEPTPDSVESISEKEQHLVSTMTQIVQLSIKISEGKDEH
QRALNDTLQRVRAFCGEMDDEESQKLLQPWILKLSPHLRRELFSFIVTDL
LSISFMDRKRMLMSTDTGERLEHALQGLEPYVKELAAKGAIVSALGQPED
QPRP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003111Lon_substr-bd
IPR015947PUA-like_sf