Ggra1660.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1660.t1
Unique NameGgra1660.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length305
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:284442..285356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1660Ggra1660Gracilaria gracilis GNS1m malegenetig00000050_pilon 284442..285356 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1660.t1.start1Ggra1660.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 284442..284444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1660.t1.CDS1Ggra1660.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 284442..285356 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1660.t1.exon1Ggra1660.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 284442..285356 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1660.t1.stop1Ggra1660.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 285354..285356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1660.t1Ggra1660.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 284442..285356 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1660.t1 ID=Ggra1660.t1|Name=Ggra1660.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=305bp
MPTIPGLCPSNTLHRSLHSRHQHLKYQNIRRPRPACLNLQACASSTQASQ
EDVRNMCVLALPMTSGADVIFPGGSQLLSVPHEAADRLLRTVCENDPPEF
VFVCVNAWGDPGEVGTLCLIDDVHIDHAQDKATLLCSGISRLRLLRFDDQ
MQNAEVQVFTDDEPTPDSVESISEKEQHLVSTMTQIVQLSIKISEGKDEH
QRALNDTLQRVRAFCGEMDDEESQKLLQPWILKLSPHLRRELFSFIVTDL
LSISFMDRKRMLMSTDTGERLEHALQGLEPYVKELAAKGAIVSALGQPED
QPRP*
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spliced messenger RNA

>Ggra1660.t1 ID=Ggra1660.t1|Name=Ggra1660.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000050_pilon:284442..285356+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAACCATTCCCGGTCTCTGCCCATCCAATACCTTACACCGTTCTCT
TCATTCTCGCCATCAACATCTAAAGTATCAAAATATTCGTCGTCCTCGTC
CTGCGTGTCTCAATCTCCAGGCATGCGCGTCAAGTACACAGGCTTCCCAA
GAAGATGTCAGGAATATGTGCGTACTGGCTTTGCCAATGACCTCTGGAGC
TGATGTGATATTCCCGGGTGGCAGTCAGCTTCTCTCCGTCCCACATGAAG
CAGCAGATCGATTGCTGAGAACGGTTTGTGAGAATGACCCTCCAGAATTT
GTATTTGTTTGCGTCAACGCTTGGGGGGATCCTGGTGAGGTGGGAACGTT
ATGTCTTATCGACGACGTGCATATTGACCATGCACAGGACAAGGCAACGT
TGCTGTGCAGCGGAATTTCACGTCTACGTCTATTACGCTTTGATGATCAA
ATGCAGAACGCCGAAGTGCAAGTATTCACTGATGACGAACCAACACCGGA
TAGTGTTGAATCAATAAGTGAAAAAGAACAACATTTGGTATCCACCATGA
CCCAAATTGTGCAGCTGAGTATAAAGATTTCGGAAGGAAAGGATGAACAC
CAACGCGCTTTGAATGACACCCTTCAGCGAGTCCGTGCTTTTTGTGGAGA
AATGGATGATGAGGAAAGTCAAAAGCTCTTACAGCCCTGGATTTTGAAGC
TCAGTCCACATTTGAGAAGGGAGCTGTTCAGTTTTATCGTCACAGATCTT
CTCAGCATAAGCTTTATGGATCGCAAACGCATGCTCATGAGCACAGACAC
AGGTGAGCGCCTTGAACATGCTCTACAAGGACTAGAACCATATGTGAAAG
AGTTAGCCGCAAAGGGGGCCATAGTTTCTGCACTAGGGCAGCCAGAGGAT
CAACCTCGCCCATGA
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protein sequence of Ggra1660.t1

>Ggra1660.t1 ID=Ggra1660.t1|Name=Ggra1660.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=305bp
MPTIPGLCPSNTLHRSLHSRHQHLKYQNIRRPRPACLNLQACASSTQASQ
EDVRNMCVLALPMTSGADVIFPGGSQLLSVPHEAADRLLRTVCENDPPEF
VFVCVNAWGDPGEVGTLCLIDDVHIDHAQDKATLLCSGISRLRLLRFDDQ
MQNAEVQVFTDDEPTPDSVESISEKEQHLVSTMTQIVQLSIKISEGKDEH
QRALNDTLQRVRAFCGEMDDEESQKLLQPWILKLSPHLRRELFSFIVTDL
LSISFMDRKRMLMSTDTGERLEHALQGLEPYVKELAAKGAIVSALGQPED
QPRP*
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mRNA from alignment at tig00000050_pilon:284442..285356+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1660.t1 ID=Ggra1660.t1|Name=Ggra1660.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000050_pilon:284442..285356+ (Gracilaria gracilis GNS1m male)
ATGCCAACCATTCCCGGTCTCTGCCCATCCAATACCTTACACCGTTCTCT
TCATTCTCGCCATCAACATCTAAAGTATCAAAATATTCGTCGTCCTCGTC
CTGCGTGTCTCAATCTCCAGGCATGCGCGTCAAGTACACAGGCTTCCCAA
GAAGATGTCAGGAATATGTGCGTACTGGCTTTGCCAATGACCTCTGGAGC
TGATGTGATATTCCCGGGTGGCAGTCAGCTTCTCTCCGTCCCACATGAAG
CAGCAGATCGATTGCTGAGAACGGTTTGTGAGAATGACCCTCCAGAATTT
GTATTTGTTTGCGTCAACGCTTGGGGGGATCCTGGTGAGGTGGGAACGTT
ATGTCTTATCGACGACGTGCATATTGACCATGCACAGGACAAGGCAACGT
TGCTGTGCAGCGGAATTTCACGTCTACGTCTATTACGCTTTGATGATCAA
ATGCAGAACGCCGAAGTGCAAGTATTCACTGATGACGAACCAACACCGGA
TAGTGTTGAATCAATAAGTGAAAAAGAACAACATTTGGTATCCACCATGA
CCCAAATTGTGCAGCTGAGTATAAAGATTTCGGAAGGAAAGGATGAACAC
CAACGCGCTTTGAATGACACCCTTCAGCGAGTCCGTGCTTTTTGTGGAGA
AATGGATGATGAGGAAAGTCAAAAGCTCTTACAGCCCTGGATTTTGAAGC
TCAGTCCACATTTGAGAAGGGAGCTGTTCAGTTTTATCGTCACAGATCTT
CTCAGCATAAGCTTTATGGATCGCAAACGCATGCTCATGAGCACAGACAC
AGGTGAGCGCCTTGAACATGCTCTACAAGGACTAGAACCATATGTGAAAG
AGTTAGCCGCAAAGGGGGCCATAGTTTCTGCACTAGGGCAGCCAGAGGAT
CAACCTCGCCCATGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:284442..285356+

>Ggra1660.t1 ID=Ggra1660.t1|Name=Ggra1660.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00000050_pilon:284442..285356+ (Gracilaria gracilis GNS1m male)
ATGCCAACCATTCCCGGTCTCTGCCCATCCAATACCTTACACCGTTCTCT
TCATTCTCGCCATCAACATCTAAAGTATCAAAATATTCGTCGTCCTCGTC
CTGCGTGTCTCAATCTCCAGGCATGCGCGTCAAGTACACAGGCTTCCCAA
GAAGATGTCAGGAATATGTGCGTACTGGCTTTGCCAATGACCTCTGGAGC
TGATGTGATATTCCCGGGTGGCAGTCAGCTTCTCTCCGTCCCACATGAAG
CAGCAGATCGATTGCTGAGAACGGTTTGTGAGAATGACCCTCCAGAATTT
GTATTTGTTTGCGTCAACGCTTGGGGGGATCCTGGTGAGGTGGGAACGTT
ATGTCTTATCGACGACGTGCATATTGACCATGCACAGGACAAGGCAACGT
TGCTGTGCAGCGGAATTTCACGTCTACGTCTATTACGCTTTGATGATCAA
ATGCAGAACGCCGAAGTGCAAGTATTCACTGATGACGAACCAACACCGGA
TAGTGTTGAATCAATAAGTGAAAAAGAACAACATTTGGTATCCACCATGA
CCCAAATTGTGCAGCTGAGTATAAAGATTTCGGAAGGAAAGGATGAACAC
CAACGCGCTTTGAATGACACCCTTCAGCGAGTCCGTGCTTTTTGTGGAGA
AATGGATGATGAGGAAAGTCAAAAGCTCTTACAGCCCTGGATTTTGAAGC
TCAGTCCACATTTGAGAAGGGAGCTGTTCAGTTTTATCGTCACAGATCTT
CTCAGCATAAGCTTTATGGATCGCAAACGCATGCTCATGAGCACAGACAC
AGGTGAGCGCCTTGAACATGCTCTACAAGGACTAGAACCATATGTGAAAG
AGTTAGCCGCAAAGGGGGCCATAGTTTCTGCACTAGGGCAGCCAGAGGAT
CAACCTCGCCCATGA
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