Ggra1641.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1641.t1
Unique NameGgra1641.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length168
Homology
BLAST of Ggra1641.t1 vs. uniprot
Match: A0A2V3IKH6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKH6_9FLOR)

HSP 1 Score: 165 bits (418), Expect = 2.100e-49
Identity = 93/165 (56.36%), Postives = 116/165 (70.30%), Query Frame = 0
Query:    1 MTEEGVLDAAKEGAKSGLFIGFAVGSIRAFLYGDAPQNATTTAPATVTPKKAPPTTSFAATVLRAVRPTPLSMLVSTTAIYSGLGAVYLASGNFAHSVRDKDDMWNSVIGGVVTGSLVGLKSGSLYISAGAASSLAAVSALYHIFDGQFGPQKDNPGIRRRRAVY 165
            M+E GVL +AKEGA  G + GF V + RAFL   AP       P+ V  K +P + S   +V R+   +PL M+ STTAIYS LGAVY+A+   A   R+KDDMWNSVI G V GSLVG++S SLY+SAGAA+SLA+VSALYHIFDGQFG  KDN  ++RR+A+Y
Sbjct:    1 MSESGVLQSAKEGAVPGAYAGFTVAAARAFLAAGAP-------PSPVPAKSSPVSKSLLTSVARS---SPLPMIASTTAIYSALGAVYMATTTLARDTRNKDDMWNSVIAGAVAGSLVGIRSSSLYMSAGAAASLASVSALYHIFDGQFGAPKDNRVVQRRKAIY 155          
BLAST of Ggra1641.t1 vs. uniprot
Match: F9XND8 (Uncharacterized protein n=5 Tax=Zymoseptoria TaxID=1047167 RepID=F9XND8_ZYMTI)

HSP 1 Score: 54.7 bits (130), Expect = 4.400e-6
Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = 0
Query:   76 STTAIYSGLGAVYLASGNFAHSVRDKDDMWNSVIGGVVTGSLVGLKSGSLYISAGAASSLAAVSALYHIFDGQFGPQKDNPGI 158
            ST A+++ +G  Y  +   A ++R KDD WN+ IGG   G+++GL+  S     G  S++A V + +H   G+    K +P I
Sbjct:   56 STIAVFAAMGGAYSFTSCAAANLRQKDDTWNTTIGGAFAGTMLGLRFRSGPAVIGYGSAMAVVLSAFHFTGGRMSGFKKDPEI 138          
BLAST of Ggra1641.t1 vs. uniprot
Match: A0A6A6HMW7 (Uncharacterized protein n=1 Tax=Viridothelium virens TaxID=1048519 RepID=A0A6A6HMW7_9PEZI)

HSP 1 Score: 54.7 bits (130), Expect = 4.730e-6
Identity = 26/82 (31.71%), Postives = 47/82 (57.32%), Query Frame = 0
Query:   77 TTAIYSGLGAVYLASGNFAHSVRDKDDMWNSVIGGVVTGSLVGLKSGSLYISAGAASSLAAVSALYHIFDGQFGPQKDNPGI 158
            T A+++ +GA Y      + ++R+KDD WN+ +G   +GS+VGLK G+L    G  ++LA ++ +Y    G     + +P +
Sbjct:   59 TIAVFAAMGASYEFVKCASANLREKDDHWNTTLGAFFSGSMVGLKKGTLPAFLGYGAALAVIAGVYDYTGGSLSGYRKDPDV 140          
The following BLAST results are available for this feature:
BLAST of Ggra1641.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IKH62.100e-4956.36NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
F9XND84.400e-633.73Uncharacterized protein n=5 Tax=Zymoseptoria TaxID... [more]
A0A6A6HMW74.730e-631.71Uncharacterized protein n=1 Tax=Viridothelium vire... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 121..125
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..70
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 146..167
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 103..120
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 126..145
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 92..102
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 71..91
NoneNo IPR availableTMHMMTMhelixcoord: 13..32
NoneNo IPR availableTMHMMTMhelixcoord: 73..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:234708..235286 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1641.t1Ggra1641.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 234708..235286 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1641.t1 ID=Ggra1641.t1|Name=Ggra1641.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=168bp
MTEEGVLDAAKEGAKSGLFIGFAVGSIRAFLYGDAPQNATTTAPATVTPK
KAPPTTSFAATVLRAVRPTPLSMLVSTTAIYSGLGAVYLASGNFAHSVRD
KDDMWNSVIGGVVTGSLVGLKSGSLYISAGAASSLAAVSALYHIFDGQFG
PQKDNPGIRRRRAVYQD*
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