Ggra1641.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1641.t1
Unique NameGgra1641.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:234708..235286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog41875.XP_007515699.1
PFAMsTim17
Max annot lvl33090|Viridiplantae
KEGG koko:K17790
KEGG TC3.A.8.1
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0008104,GO:0008150,GO:0009507,GO:0009526,GO:0009527,GO:0009536,GO:0016020,GO:0019866,GO:0019867,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042170,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044435,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0046983,GO:0051179,GO:0051641,GO:0070469,GO:0070727,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:1902494,GO:1990204
Evalue1.39e-06
EggNOG OGsCOG5596@1|root,KOG3225@2759|Eukaryota,37TT6@33090|Viridiplantae
DescriptionOuter envelope pore protein 16-3, chloroplastic
COG categoryU
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1641Ggra1641Gracilaria gracilis GNS1m malegenetig00000050_pilon 234708..235286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1641.t1Ggra1641.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 234708..235286 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1641.t1.start1Ggra1641.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 234708..234710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1641.t1.CDS1Ggra1641.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 234708..234914 +
Ggra1641.t1.CDS2Ggra1641.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 234990..235286 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1641.t1.exon1Ggra1641.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 234708..234914 +
Ggra1641.t1.exon2Ggra1641.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 234990..235286 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1641.t1.intron1Ggra1641.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 234915..234989 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1641.t1.stop1Ggra1641.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 235284..235286 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1641.t1 ID=Ggra1641.t1|Name=Ggra1641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=168bp
MTEEGVLDAAKEGAKSGLFIGFAVGSIRAFLYGDAPQNATTTAPATVTPK
KAPPTTSFAATVLRAVRPTPLSMLVSTTAIYSGLGAVYLASGNFAHSVRD
KDDMWNSVIGGVVTGSLVGLKSGSLYISAGAASSLAAVSALYHIFDGQFG
PQKDNPGIRRRRAVYQD*
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spliced messenger RNA

>Ggra1641.t1 ID=Ggra1641.t1|Name=Ggra1641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00000050_pilon:234708..235286+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGAAGAAGGCGTTTTGGACGCCGCAAAAGAAGGTGCCAAGTCCGG
CCTCTTCATCGGCTTTGCCGTCGGCTCCATCCGAGCCTTTCTCTATGGAG
ATGCGCCACAAAATGCCACAACGACTGCGCCGGCCACCGTGACACCGAAA
AAGGCTCCACCTACGACCTCCTTCGCAGCGACTGTGCTTCGTGCGGTCCG
TCCAACACCTCTTTCGATGCTTGTTTCTACAACTGCGATATATTCTGGGC
TGGGAGCCGTCTATCTCGCGAGCGGTAATTTTGCCCACAGTGTTCGGGAT
AAGGATGATATGTGGAACAGCGTAATTGGTGGCGTTGTTACTGGATCGCT
GGTTGGATTGAAATCGGGGTCTCTTTATATTAGTGCCGGTGCTGCGAGTT
CACTTGCTGCTGTTTCTGCTTTGTATCATATATTTGATGGCCAGTTCGGA
CCGCAGAAAGATAACCCTGGCATTCGGAGACGACGCGCAGTATATCAAGA
TTGA
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protein sequence of Ggra1641.t1

>Ggra1641.t1 ID=Ggra1641.t1|Name=Ggra1641.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=168bp
MTEEGVLDAAKEGAKSGLFIGFAVGSIRAFLYGDAPQNATTTAPATVTPK
KAPPTTSFAATVLRAVRPTPLSMLVSTTAIYSGLGAVYLASGNFAHSVRD
KDDMWNSVIGGVVTGSLVGLKSGSLYISAGAASSLAAVSALYHIFDGQFG
PQKDNPGIRRRRAVYQD*
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mRNA from alignment at tig00000050_pilon:234708..235286+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1641.t1 ID=Ggra1641.t1|Name=Ggra1641.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=579bp|location=Sequence derived from alignment at tig00000050_pilon:234708..235286+ (Gracilaria gracilis GNS1m male)
ATGACTGAAGAAGGCGTTTTGGACGCCGCAAAAGAAGGTGCCAAGTCCGG
CCTCTTCATCGGCTTTGCCGTCGGCTCCATCCGAGCCTTTCTCTATGGAG
ATGCGCCACAAAATGCCACAACGACTGCGCCGGCCACCGTGACACCGAAA
AAGGCTCCACCTACGACCTCCTTCGCAGCGACTGTGCTTCGTGCGGTCCG
TCCAACAGTACGTGTCTTGCTTTCCATTTGAACATCTGCGTTTATGTCTT
CTCATGGTTTGATTTGCTCACGCTTTTGAAAGCCTCTTTCGATGCTTGTT
TCTACAACTGCGATATATTCTGGGCTGGGAGCCGTCTATCTCGCGAGCGG
TAATTTTGCCCACAGTGTTCGGGATAAGGATGATATGTGGAACAGCGTAA
TTGGTGGCGTTGTTACTGGATCGCTGGTTGGATTGAAATCGGGGTCTCTT
TATATTAGTGCCGGTGCTGCGAGTTCACTTGCTGCTGTTTCTGCTTTGTA
TCATATATTTGATGGCCAGTTCGGACCGCAGAAAGATAACCCTGGCATTC
GGAGACGACGCGCAGTATATCAAGATTGA
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Coding sequence (CDS) from alignment at tig00000050_pilon:234708..235286+

>Ggra1641.t1 ID=Ggra1641.t1|Name=Ggra1641.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=504bp|location=Sequence derived from alignment at tig00000050_pilon:234708..235286+ (Gracilaria gracilis GNS1m male)
ATGACTGAAGAAGGCGTTTTGGACGCCGCAAAAGAAGGTGCCAAGTCCGG
CCTCTTCATCGGCTTTGCCGTCGGCTCCATCCGAGCCTTTCTCTATGGAG
ATGCGCCACAAAATGCCACAACGACTGCGCCGGCCACCGTGACACCGAAA
AAGGCTCCACCTACGACCTCCTTCGCAGCGACTGTGCTTCGTGCGGTCCG
TCCAACACCTCTTTCGATGCTTGTTTCTACAACTGCGATATATTCTGGGC
TGGGAGCCGTCTATCTCGCGAGCGGTAATTTTGCCCACAGTGTTCGGGAT
AAGGATGATATGTGGAACAGCGTAATTGGTGGCGTTGTTACTGGATCGCT
GGTTGGATTGAAATCGGGGTCTCTTTATATTAGTGCCGGTGCTGCGAGTT
CACTTGCTGCTGTTTCTGCTTTGTATCATATATTTGATGGCCAGTTCGGA
CCGCAGAAAGATAACCCTGGCATTCGGAGACGACGCGCAGTATATCAAGA
TTGA
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