Ggra1630.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra1630.t1
Unique Name	Ggra1630.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	369

Homology

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BLAST of Ggra1630.t1 vs. uniprot
Match: A0A2V3J1P2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1P2_9FLOR)

HSP 1 Score: 174 bits (440), Expect = 9.350e-48
Identity = 98/310 (31.61%), Postives = 147/310 (47.42%), Query Frame = 0

Query:   62 PATIQCSSHGVATLYINGIIYSKLFSPHPWSMTVGLAKGDVIAIKAEKTDNDVGVMVTIAWKGRTYRSGRHIFKVRSDSYFNWNAIEQDTWNRAVRGRNGKPKLITSFCSWKKADIVEFKKDKFDKKAFFIWSLHSSRNHGVHAKTPAQTVYIRHVMGGDKCPKDSKKGAKTKKRNSXXXXXXXXXXXXXXIDTSTNXXXRESQKQKNSSQNEVQGGMDIGIGGQSDTRT----CKCRLVSMHGGTCFDMVTPGDDEGPCSARTCEPQYECAHDGKTMCFMRRMLTRVVMTGPRSCKKISAATDLLVPYK 367
            PATI+ S++   TL++NG    +     P ++ V L KGDV+A  A K   + GVMVT+ W G+ YRSG   F    D Y  W   +Q+ WN A   R+ +   + +FC W +AD ++ K DKFD KA ++W L    N     + P  TV++R V+GG+ C                             +    +   + SQ+ ++S +++      I   GQS        C C+L +  GG C+DM      EG C  R CE ++EC   G  +C  R   ++VVMT P  C K+    + L+PY+
Sbjct:   57 PATIKFSAYADTTLFVNGKSLGRTIISSPTTVNVDLKKGDVVAFMARKIGENPGVMVTVDWDGKMYRSGHSRFTANGD-YEQWTEEDQENWNLASSYRHKESGTLRTFCHWDRADDMDIKTDKFDLKASYVWRLAPKDNK--KEEKPTDTVFLRLVIGGENC----------------------------GVSPGKDESNKPSQRAEDSEKDKK-----ITFDGQSSDSDFQGFCVCKLTNRSGGECYDMDDDSAKEGGCKPRPCEAKFECTESGNKICMRRHADSKVVMTAPNHCMKVPTVGENLIPYE 330

[Close]

BLAST of Ggra1630.t1 vs. uniprot
Match: A0A2V3IJA7 (Replicase polyprotein 1a n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJA7_9FLOR)

HSP 1 Score: 134 bits (337), Expect = 1.780e-31
Identity = 66/169 (39.05%), Postives = 99/169 (58.58%), Query Frame = 0

Query:   63 ATIQCSSHGVATLYINGIIYSKLFSPHPWSMTVGLAKGDVIAIKAEKTDNDVGVMVTIAWKGRTYRSGRHIFKVRSDSYFNWNAIEQDTWNRAVRGRNGKPKLITSFCSWKKADIVEFKKDKFDKKAFFIWSLHSSRNHGVHAKTPAQTVYIRHVMGGDKCPKDSKKGA 231
            A+I+ S++  A +++NG++  K+ S    ++TV +AKGDV+ I AEKT +   ++ TI W G TYRS    ++ R+D + +W   ++  WN  V       +L  +FC W KAD V+ K +KFD+KA FIW L S          PA TV+ RHV+GGD C    +KG+
Sbjct:   63 ASIKLSAYADAQVFVNGVLKEKVDSGSTATVTVSVAKGDVVGILAEKTSDKAAILTTIVWNGHTYRSDTAHYRTRTDDFLSWPTDQKAHWNNRVD--KSSKELKKAFCKWDKADEVDIKHNKFDRKARFIWKLVSEGKGNKKKTLPAHTVHFRHVIGGDNCGGKKQKGS 229

The following BLAST results are available for this feature:

BLAST of Ggra1630.t1 vs. uniprot

BLAST of Ggra1630.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J1P2	9.350e-48	31.61	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
A0A2V3IJA7	1.780e-31	39.05	Replicase polyprotein 1a n=1 Tax=Gracilariopsis ch...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..268
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 25..368
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 20..24

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000050_pilon	contig	tig00000050_pilon:107457..108563 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1630.t1	Ggra1630.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000050_pilon 107457..108563 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra1630.t1 ID=Ggra1630.t1|Name=Ggra1630.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=369bp
MKLSMILVLIALTFFSSVFRGASASVLTKLEDGYKLLAKNRRVFKPSGDH
SPGSRKVIRVWPATIQCSSHGVATLYINGIIYSKLFSPHPWSMTVGLAKG
DVIAIKAEKTDNDVGVMVTIAWKGRTYRSGRHIFKVRSDSYFNWNAIEQD
TWNRAVRGRNGKPKLITSFCSWKKADIVEFKKDKFDKKAFFIWSLHSSRN
HGVHAKTPAQTVYIRHVMGGDKCPKDSKKGAKTKKRNSNDGAGKKKRNEK
NSIDTSTNEDKRESQKQKNSSQNEVQGGMDIGIGGQSDTRTCKCRLVSMH
GGTCFDMVTPGDDEGPCSARTCEPQYECAHDGKTMCFMRRMLTRVVMTGP
RSCKKISAATDLLVPYKR*