Ggra1629.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1629.t1
Unique NameGgra1629.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length297
Homology
BLAST of Ggra1629.t1 vs. uniprot
Match: A0A2V3IKF0 (Translocon-associated protein subunit alpha n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKF0_9FLOR)

HSP 1 Score: 380 bits (977), Expect = 4.660e-130
Identity = 209/306 (68.30%), Postives = 240/306 (78.43%), Query Frame = 0
Query:    1 MRVRHTLLLFLFAVSVWLFTV-------AAEDKSIDEF--QESEEDRIAREIEEQAAAAVEEAXXXXXADDADALDEDADSARYDPERRHPLTDLPPPAEDVGIGYAFLTNFSETKSKESDTVVTLGETIKTVIAFANNGRSPYHVWGTMGSLNMMHNFKIHVQNFTYSIVNKTVAPDGELSFSYSFTPNERLDIRPFQLALTVFYEAQGSSGKAIRGHSTTFFNTTIATEPGPQSMSNGLFLLIVALVCGASVGGFLVFKKIEATKTAKPEMGTEVDSKNEWLEEHQAMM-TGGGRARSRPNAKR 296
            MRV    LL +  ++  LFT        +A +  +DE    ++E +RIAREIEE         XXXXX   ADALDEDAD ARYDPERRHPL+DLPPP+ DV +G+AFLT FSETKSK SD VVTLGETIKTVIAFAN+GR  YHVWG MGSLNM  NFKIHVQNFTY+++NKTV P  ELSFSY+FTP+ERLDIRPFQLALT FYEAQGS+G AIRG+STTFFN T+ATEPG Q+MSNGLF+LIV ++ GA++GGF  FKK+EA KTAK EMGTE  SKNEWLEEH+AM+ TGGGRARSR  AKR
Sbjct:    1 MRVGRFSLLLIVLLAAILFTAINAEAHDSAHEVDVDESGGDDTESERIAREIEEXXXXXXXXXXXXXXXXXADALDEDADIARYDPERRHPLSDLPPPSSDVSVGHAFLTKFSETKSKASDIVVTLGETIKTVIAFANHGRGSYHVWGVMGSLNMNDNFKIHVQNFTYAMINKTVEPQEELSFSYAFTPHERLDIRPFQLALTAFYEAQGSTGNAIRGYSTTFFNATVATEPGLQTMSNGLFMLIVVVLIGAAIGGFFAFKKMEAVKTAKTEMGTEDSSKNEWLEEHEAMVKTGGGRARSRAAAKR 306          
BLAST of Ggra1629.t1 vs. uniprot
Match: A0A7S1EQE6 (Translocon-associated protein subunit alpha n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EQE6_9RHOD)

HSP 1 Score: 124 bits (312), Expect = 6.290e-30
Identity = 89/247 (36.03%), Postives = 134/247 (54.25%), Query Frame = 0
Query:   65 ALDEDADSARYDPERRHPLTDLPPPAEDVGIGYAFLTNFSETKSKESDTVVTLGETIKT--VIAFANN----GRSPYHVWGTMGSLNMMHNFKIHVQNFTYSIVNKTVAPDGELSFSYSFTPNERLDIRPFQLALTVFYE---AQGSSGKAIRG----HSTTFFNTTIATEPGPQSMSN-----GLFLLIVALVCGASVGGFLV---FKKIEATKTAKP-EMGTEVDSKNEWLEEHQAMMTGGGRAR 289
            A++E+A S+    + +HPLT++PPPAE V  G  F       KS ++D  V LG+ I    VI+++ N         HVWG +GSLN ++ F  +VQNFTYS+VN+++ P  E SF Y   P ERL+ + +++ L+VFYE   A G+S +A  G    H++T  N T+        + +     GL L  +AL  G  +   L+    KK +  K+ K  EMGT+  + NEWL+ H +M     R +
Sbjct:   70 AVEEEAKSSGKALDPQHPLTNMPPPAEGVEAGGIF-------KSGKNDGFV-LGKEIDVLGVISYSKNEFDTNLGMMHVWGVLGSLNDVNEFGKYVQNFTYSVVNRSLMPGEESSFEYKVIPYERLEAKEYRMCLSVFYEEVTATGTSKQAPNGGPLLHASTVLNVTVRLNESESGIIDNRVFYGLLLTGIALAIGVGLSVNLIKSWMKKRKGKKSTKSVEMGTKDVADNEWLQTHLSMKESSNRVK 308          
BLAST of Ggra1629.t1 vs. uniprot
Match: A0A7J7IPI2 (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IPI2_9RHOD)

HSP 1 Score: 72.0 bits (175), Expect = 1.220e-10
Identity = 49/136 (36.03%), Postives = 69/136 (50.74%), Query Frame = 0
Query:   81 HPLTDLPPPAEDVGIGYAFL-TNFSET---KSKESDTV---VTLGETIKTVIAFANNGRS-----------PYHVWGTMGSLNMMHNFKIHVQNFTYSIVNKTVAPDGELSFSYSFTPNERLDIRPFQLALTVFYE 198
            HPLTD P P EDV   +  L TN S+    K +E+D V   +  GE++  +I  +  G              Y V G MG+L  +HN  +H+QN ++S+VN+T+  + ELSF Y    +      P  L LTVF E
Sbjct:   68 HPLTDPPDPPEDVEYAFRLLQTNESDASVEKGRETDKVAVRLAAGESLPALITLSQMGHKGDDQQSGAPDGAYVVVGAMGALLAVHNPSLHLQNMSFSLVNRTLGYNKELSFVYPLAVHAAFPPGPCVLRLTVFLE 203          
BLAST of Ggra1629.t1 vs. uniprot
Match: A0A653BG23 (Translocon-associated protein subunit alpha n=1 Tax=Callosobruchus maculatus TaxID=64391 RepID=A0A653BG23_CALMS)

HSP 1 Score: 58.9 bits (141), Expect = 1.700e-6
Identity = 38/135 (28.15%), Postives = 60/135 (44.44%), Query Frame = 0
Query:  108 SKESDTVVTLGETIKTVIAFANNGRSPYHVWGTMGSLNMMHNFKIHVQNFTYSIVNKTVAPDGELSFSYSFTPNERLDIRPFQLALTVFYEAQGSSGKAIRGHSTTFFNTTIATEPGPQSMSNGLFLLIVALVCG 242
            S  S   +  G  ++ ++ F N G   + V     S     +F  ++QNF+    +KTV P+ E +F YSF P+E    RPF L + + Y  + +SG   +      FN T+      + +    F L V L  G
Sbjct:   74 SGSSQMEIPAGLPVEFLVGFRNKGEEDFIVESLEASFRYPMDFSFYIQNFSAIGYHKTVTPNHEATFHYSFIPSEAFAGRPFGLNINLMY--RDASGNPFQ---EAVFNETVQIIELEEGLDGETFFLYVFLAAG 203          
The following BLAST results are available for this feature:
BLAST of Ggra1629.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IKF04.660e-13068.30Translocon-associated protein subunit alpha n=1 Ta... [more]
A0A7S1EQE66.290e-3036.03Translocon-associated protein subunit alpha n=1 Ta... [more]
A0A7J7IPI21.220e-1036.03Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A653BG231.700e-628.15Translocon-associated protein subunit alpha n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 40..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..48
NoneNo IPR availablePANTHERPTHR12924TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNITcoord: 5..281
NoneNo IPR availablePANTHERPTHR12924:SF0TRANSLOCON-ASSOCIATED PROTEIN SUBUNIT ALPHAcoord: 5..281
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..230
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 231..251
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 252..296
NoneNo IPR availableTMHMMTMhelixcoord: 7..24
NoneNo IPR availableTMHMMTMhelixcoord: 229..251
IPR005595Translocon-associated protein (TRAP), alpha subunitPFAMPF03896TRAP_alphacoord: 6..276
e-value: 1.1E-22
score: 80.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:105570..106542 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1629.t1Ggra1629.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 105570..106542 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1629.t1 ID=Ggra1629.t1|Name=Ggra1629.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=297bp
MRVRHTLLLFLFAVSVWLFTVAAEDKSIDEFQESEEDRIAREIEEQAAAA
VEEAAEEEEADDADALDEDADSARYDPERRHPLTDLPPPAEDVGIGYAFL
TNFSETKSKESDTVVTLGETIKTVIAFANNGRSPYHVWGTMGSLNMMHNF
KIHVQNFTYSIVNKTVAPDGELSFSYSFTPNERLDIRPFQLALTVFYEAQ
GSSGKAIRGHSTTFFNTTIATEPGPQSMSNGLFLLIVALVCGASVGGFLV
FKKIEATKTAKPEMGTEVDSKNEWLEEHQAMMTGGGRARSRPNAKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005595TRAP_alpha