Ggra1629.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1629.t1
Unique NameGgra1629.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:105570..106542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDO97810
PFAMsTRAP_alpha
Max annot lvl3041|Chlorophyta
KEGG koko:K13249
KEGG Pathwayko04141,map04141
KEGG ModuleM00402
Evalue1.47e-20
EggNOG OGsKOG1631@1|root,KOG1631@2759|Eukaryota,37K41@33090|Viridiplantae,34IE7@3041|Chlorophyta
DescriptionTranslocon-associated protein (TRAP), alpha subunit
COG categoryU
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1629Ggra1629Gracilaria gracilis GNS1m malegenetig00000050_pilon 105570..106542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1629.t1Ggra1629.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 105570..106542 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1629.t1.start1Ggra1629.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 105570..105572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1629.t1.CDS1Ggra1629.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 105570..105639 +
Ggra1629.t1.CDS2Ggra1629.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 105722..106542 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1629.t1.exon1Ggra1629.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 105570..105639 +
Ggra1629.t1.exon2Ggra1629.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 105722..106542 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1629.t1.intron1Ggra1629.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 105640..105721 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1629.t1.stop1Ggra1629.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 106540..106542 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1629.t1 ID=Ggra1629.t1|Name=Ggra1629.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp
MRVRHTLLLFLFAVSVWLFTVAAEDKSIDEFQESEEDRIAREIEEQAAAA
VEEAAEEEEADDADALDEDADSARYDPERRHPLTDLPPPAEDVGIGYAFL
TNFSETKSKESDTVVTLGETIKTVIAFANNGRSPYHVWGTMGSLNMMHNF
KIHVQNFTYSIVNKTVAPDGELSFSYSFTPNERLDIRPFQLALTVFYEAQ
GSSGKAIRGHSTTFFNTTIATEPGPQSMSNGLFLLIVALVCGASVGGFLV
FKKIEATKTAKPEMGTEVDSKNEWLEEHQAMMTGGGRARSRPNAKR*
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spliced messenger RNA

>Ggra1629.t1 ID=Ggra1629.t1|Name=Ggra1629.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000050_pilon:105570..106542+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTCCGTCATACCTTACTGTTGTTTCTATTTGCCGTGTCAGTCTG
GCTGTTCACTGTTGCGGCGGAAGATAAATCAATCGATGAATTCCAGGAAT
CAGAAGAGGATAGAATTGCCAGAGAAATTGAAGAACAAGCTGCAGCCGCT
GTGGAAGAGGCTGCTGAAGAGGAAGAGGCTGATGATGCCGATGCGCTCGA
TGAGGACGCTGATTCTGCGCGTTACGACCCCGAACGCCGCCATCCTTTGA
CCGATCTTCCACCCCCCGCTGAGGATGTAGGCATAGGCTATGCGTTCCTT
ACCAACTTCTCAGAAACGAAGAGCAAGGAAAGCGATACTGTTGTTACGCT
CGGGGAAACGATCAAAACAGTTATCGCCTTCGCAAATAATGGTAGGAGCC
CATATCATGTCTGGGGTACTATGGGTTCCCTTAACATGATGCACAACTTC
AAGATCCATGTACAGAATTTTACGTACAGCATAGTGAACAAAACAGTGGC
TCCAGACGGAGAACTCAGTTTCTCATACTCGTTCACACCGAATGAAAGGT
TGGATATTCGCCCGTTTCAACTTGCCCTGACAGTGTTTTATGAGGCCCAA
GGTTCTTCTGGCAAAGCGATTCGAGGTCATTCCACTACCTTCTTCAACAC
AACCATAGCAACAGAACCCGGACCACAGAGTATGAGTAATGGGCTCTTCT
TACTTATTGTGGCTCTGGTTTGCGGTGCATCAGTTGGTGGTTTCTTGGTG
TTCAAGAAGATCGAAGCCACGAAAACTGCGAAGCCTGAGATGGGAACTGA
AGTCGATTCTAAGAATGAATGGCTCGAGGAGCACCAGGCAATGATGACCG
GTGGGGGTCGTGCAAGAAGTAGGCCCAACGCTAAGCGATAG
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protein sequence of Ggra1629.t1

>Ggra1629.t1 ID=Ggra1629.t1|Name=Ggra1629.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=297bp
MRVRHTLLLFLFAVSVWLFTVAAEDKSIDEFQESEEDRIAREIEEQAAAA
VEEAAEEEEADDADALDEDADSARYDPERRHPLTDLPPPAEDVGIGYAFL
TNFSETKSKESDTVVTLGETIKTVIAFANNGRSPYHVWGTMGSLNMMHNF
KIHVQNFTYSIVNKTVAPDGELSFSYSFTPNERLDIRPFQLALTVFYEAQ
GSSGKAIRGHSTTFFNTTIATEPGPQSMSNGLFLLIVALVCGASVGGFLV
FKKIEATKTAKPEMGTEVDSKNEWLEEHQAMMTGGGRARSRPNAKR*
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mRNA from alignment at tig00000050_pilon:105570..106542+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1629.t1 ID=Ggra1629.t1|Name=Ggra1629.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=973bp|location=Sequence derived from alignment at tig00000050_pilon:105570..106542+ (Gracilaria gracilis GNS1m male)
ATGCGTGTCCGTCATACCTTACTGTTGTTTCTATTTGCCGTGTCAGTCTG
GCTGTTCACTGTTGCGGCGGGTACGTGTATTATCTTCATATCATTGTCGG
ACATTCGACACCCAGCTACTGACAAAAGAGAGCACTGCGTTTATGCGAGC
AGAAGATAAATCAATCGATGAATTCCAGGAATCAGAAGAGGATAGAATTG
CCAGAGAAATTGAAGAACAAGCTGCAGCCGCTGTGGAAGAGGCTGCTGAA
GAGGAAGAGGCTGATGATGCCGATGCGCTCGATGAGGACGCTGATTCTGC
GCGTTACGACCCCGAACGCCGCCATCCTTTGACCGATCTTCCACCCCCCG
CTGAGGATGTAGGCATAGGCTATGCGTTCCTTACCAACTTCTCAGAAACG
AAGAGCAAGGAAAGCGATACTGTTGTTACGCTCGGGGAAACGATCAAAAC
AGTTATCGCCTTCGCAAATAATGGTAGGAGCCCATATCATGTCTGGGGTA
CTATGGGTTCCCTTAACATGATGCACAACTTCAAGATCCATGTACAGAAT
TTTACGTACAGCATAGTGAACAAAACAGTGGCTCCAGACGGAGAACTCAG
TTTCTCATACTCGTTCACACCGAATGAAAGGTTGGATATTCGCCCGTTTC
AACTTGCCCTGACAGTGTTTTATGAGGCCCAAGGTTCTTCTGGCAAAGCG
ATTCGAGGTCATTCCACTACCTTCTTCAACACAACCATAGCAACAGAACC
CGGACCACAGAGTATGAGTAATGGGCTCTTCTTACTTATTGTGGCTCTGG
TTTGCGGTGCATCAGTTGGTGGTTTCTTGGTGTTCAAGAAGATCGAAGCC
ACGAAAACTGCGAAGCCTGAGATGGGAACTGAAGTCGATTCTAAGAATGA
ATGGCTCGAGGAGCACCAGGCAATGATGACCGGTGGGGGTCGTGCAAGAA
GTAGGCCCAACGCTAAGCGATAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:105570..106542+

>Ggra1629.t1 ID=Ggra1629.t1|Name=Ggra1629.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00000050_pilon:105570..106542+ (Gracilaria gracilis GNS1m male)
ATGCGTGTCCGTCATACCTTACTGTTGTTTCTATTTGCCGTGTCAGTCTG
GCTGTTCACTGTTGCGGCGGAAGATAAATCAATCGATGAATTCCAGGAAT
CAGAAGAGGATAGAATTGCCAGAGAAATTGAAGAACAAGCTGCAGCCGCT
GTGGAAGAGGCTGCTGAAGAGGAAGAGGCTGATGATGCCGATGCGCTCGA
TGAGGACGCTGATTCTGCGCGTTACGACCCCGAACGCCGCCATCCTTTGA
CCGATCTTCCACCCCCCGCTGAGGATGTAGGCATAGGCTATGCGTTCCTT
ACCAACTTCTCAGAAACGAAGAGCAAGGAAAGCGATACTGTTGTTACGCT
CGGGGAAACGATCAAAACAGTTATCGCCTTCGCAAATAATGGTAGGAGCC
CATATCATGTCTGGGGTACTATGGGTTCCCTTAACATGATGCACAACTTC
AAGATCCATGTACAGAATTTTACGTACAGCATAGTGAACAAAACAGTGGC
TCCAGACGGAGAACTCAGTTTCTCATACTCGTTCACACCGAATGAAAGGT
TGGATATTCGCCCGTTTCAACTTGCCCTGACAGTGTTTTATGAGGCCCAA
GGTTCTTCTGGCAAAGCGATTCGAGGTCATTCCACTACCTTCTTCAACAC
AACCATAGCAACAGAACCCGGACCACAGAGTATGAGTAATGGGCTCTTCT
TACTTATTGTGGCTCTGGTTTGCGGTGCATCAGTTGGTGGTTTCTTGGTG
TTCAAGAAGATCGAAGCCACGAAAACTGCGAAGCCTGAGATGGGAACTGA
AGTCGATTCTAAGAATGAATGGCTCGAGGAGCACCAGGCAATGATGACCG
GTGGGGGTCGTGCAAGAAGTAGGCCCAACGCTAAGCGATAG
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