Ggra1618.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1618.t1
Unique NameGgra1618.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length490
Homology
BLAST of Ggra1618.t1 vs. uniprot
Match: A0A2V3ITH0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITH0_9FLOR)

HSP 1 Score: 360 bits (925), Expect = 1.420e-116
Identity = 205/488 (42.01%), Postives = 297/488 (60.86%), Query Frame = 0
Query:    1 MEEIGLIVSPSTWNVIKFVAFSLVLTPILEFLIHDITQRKATLDVLRGRSVAFRDTRLGLFSLHGTFWGSNRNRFLLLIIGTMAIAMELLLEFSFSSIPRTVATSRRVWMQPAHLQRYKFSSSSQPNLINEPVQFLADAADSNCAIQGDFNLRRRVEPSSGH----LQYALSGNYTVRSPYLDASDNETVLCSAEEVRKSGKFLVPY---VSFKQDNEDGVDLFNPPFVTGTGLHDNPEYSAVAFQVTRQPDILMGNISIALYVGRNSFCIKNVPSGDVEYVYYLCALRGKTAFAFAMGFWAEGDSTVTVKHAVMEMFGDAFKALHQERERQIRFLFILLFLHRDWHEHDTEISRYFRKTALEQLFKIALLVANEDGVAGLRSSEQVKEMYVGETEMASMKPLGFIPGALILFFLVVLVTCNILLWKRDTSAKSQAGNHTVEISLQWLRRQLLLDINEICNLSLSEQHFAYQLVRTNQSDERRLQLLP 481
            MEE+ L VSPS WN+IK+V  SL++TP  EFL+H ++Q+KA  D+LRGR+VA  DTRLG+FSLH TFWG +RNR+LLL+IGT  IA+ELL EFSFSS     + + +VW QP H QRY  SS  + + + EP     +AA+    ++G+FN+RR+ +         ++Y+++G YTVR PYL A+DN T+ CSA+ + K   F VP+   V +    E+G D F          ++   Y+ V  ++  + ++ + +  + ++ G+NS CI +         Y LC LR ++AF+ A+G   E D  V++   VMEM G A   L  +  RQIRFL   LFL+  WH   +E +   RKT LEQ+ +IAL+VANE+GVAG+R  +  +E+  G  E AS+K L  IPGALI   L++ ++ N+LL      A+ + G H+V IS Q+LR+QL  D+  +       Q   Y+LV+   +DE+RLQLLP
Sbjct:    1 MEELSLNVSPSVWNIIKYVTLSLIITPTFEFLLHRLSQQKARWDILRGRTVALSDTRLGIFSLHSTFWGRSRNRYLLLVIGTFVIAIELLFEFSFSSKLVAKSKTEQVWSQPDHQQRYLISSE-EVHFMREPALLPVEAANIEGCVEGEFNMRRKEKTKDEFQQTIMEYSINGMYTVRRPYLSATDNATLYCSADHIEKKASFFVPFATKVVYDDVEEEGFDYFG---AFEDKFYNRSIYADVDMKLRFKANLTIDDTKLYMFNGKNSICIGSKSLAVFGTAYLLCGLRAQSAFSLAVGSLHEDDERVSISTIVMEMSGPALGPLVDQAGRQIRFLLSNLFLNLVWHRPASEGASKLRKTTLEQIVQIALIVANEEGVAGIRRVKASREVLDGVQERASVKRLAIIPGALIGGMLLLFISMNVLLAICIAKAQRKTGQHSVRISTQFLRKQLRNDLLGMRAAHNEWQEIGYKLVQ--DADEQRLQLLP 482          
BLAST of Ggra1618.t1 vs. uniprot
Match: A0A2V3IUL8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUL8_9FLOR)

HSP 1 Score: 180 bits (457), Expect = 2.330e-47
Identity = 156/509 (30.65%), Postives = 249/509 (48.92%), Query Frame = 0
Query:    1 MEEIGLIVSPSTWNVIKFVAFSLVLTPILEFLIHDITQRKATLDVLRGRSVAFRDTRLGLFSLHGTFWGSNRNRFLLLIIGTMAIAMELLLEFSFSSIPRTVATSRRVWMQPAHLQRY-KFSSSSQPNLINEPVQFLADAADSNCAIQGDFNLRRRVEPSSGH------LQYALSGNYTVRSPYLDASDNETVLCSAEEVRKSGKFLVPYV--SFKQDNEDGVDLFNPP----FVTGTGLHDNPEYSAVAFQVTRQPDILMGNISIALYVGRNSFCIKNVPSGDVEYVYYLCALRGKTAFAFAMGFWAEGDSTVTVKHAVMEMFGDAFKALHQERERQIRFLFILLFLHRDWHEHDTEIS---RYFRKTALEQLFKIALLVANEDGVAGLRSSEQVKEMYVGETEMASMKPLGFIPGA---LILFFLVVLVTCNILLW-------KRDTSAKSQAGNHTVEISLQWLRRQLLLDINE--ICNLSLSEQHFAYQLVRTNQSDERRLQLLP 481
            M EI L + PS  NVIK+   +L+LTP+ E L   +   K+T DVL G ++ F  ++LG+FSLHGT+WG +RNRF+L+ +G   IA ELL EFSFSS    +   R+VW QP+H QRY   +   +  L  EP +F   A    C       LR R   + G+      L++ L+GNYT+R PY   SD+E VLCSA +      F+VP V  +      +GV L  P     ++    + DNP      F  T   D  +G +      G N  C  +            C +R +   +F + FW      V +K +     G+A + L  ER RQ+R +  +++ +        E+S   R   K  +E L +  ++ ANE+GV GL+++   + +  G  +MA+    G++P +   L L   +++V+C ++         K+   A        ++ + Q++R ++L D+     C  S++ Q+  ++L  T+   E  L+L+P
Sbjct:    1 MTEIQLGIDPSILNVIKYGVVALILTPLFEILADSLVSAKSTYDVLSGHTIEFSHSQLGIFSLHGTYWGRSRNRFMLIALGFAVIATELLFEFSFSSTTVDLEEVRQVWKQPSHAQRYIPAAGRERIELYREPTEF-PGAVALRCTRGPRTMLRYRSNHTDGNERYQGGLEFRLNGNYTIRMPYRARSDDE-VLCSATQKTAKATFIVPRVVRTRTASQVEGVSLEVPTSGYKYIKSI-VQDNPPPVIDLFLYT---DTEVGEVRS----GDNGTCAGS-----------WCLIRDRDR-SFVLVFWTFESIVVVIKAS-----GNALEGL-TERGRQVRLILTIIYENLFTGIGFNELSPSLRVAEKNDMETLARWMIVAANEEGVGGLKAATVNRTVVGGSRQMATAT--GYLPASVSGLALIGSLLMVSCLLVRVMIARMGDKQQPFAVRFWRQWRLQTTKQYMRAKMLEDLQHYGFCE-SVTLQNIGFRL-DTHGGPEATLRLIP 477          
The following BLAST results are available for this feature:
BLAST of Ggra1618.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3ITH01.420e-11642.01Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUL82.330e-4730.65Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..74
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 419..489
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 398..418
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 96..397
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 75..95
NoneNo IPR availableTMHMMTMhelixcoord: 397..419
NoneNo IPR availableTMHMMTMhelixcoord: 15..34
NoneNo IPR availableTMHMMTMhelixcoord: 75..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000146_piloncontigtig00000146_pilon:313794..315263 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1618.t1Ggra1618.t1Gracilaria gracilis GNS1m malemRNAtig00000146_pilon 313794..315263 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1618.t1 ID=Ggra1618.t1|Name=Ggra1618.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=490bp
MEEIGLIVSPSTWNVIKFVAFSLVLTPILEFLIHDITQRKATLDVLRGRS
VAFRDTRLGLFSLHGTFWGSNRNRFLLLIIGTMAIAMELLLEFSFSSIPR
TVATSRRVWMQPAHLQRYKFSSSSQPNLINEPVQFLADAADSNCAIQGDF
NLRRRVEPSSGHLQYALSGNYTVRSPYLDASDNETVLCSAEEVRKSGKFL
VPYVSFKQDNEDGVDLFNPPFVTGTGLHDNPEYSAVAFQVTRQPDILMGN
ISIALYVGRNSFCIKNVPSGDVEYVYYLCALRGKTAFAFAMGFWAEGDST
VTVKHAVMEMFGDAFKALHQERERQIRFLFILLFLHRDWHEHDTEISRYF
RKTALEQLFKIALLVANEDGVAGLRSSEQVKEMYVGETEMASMKPLGFIP
GALILFFLVVLVTCNILLWKRDTSAKSQAGNHTVEISLQWLRRQLLLDIN
EICNLSLSEQHFAYQLVRTNQSDERRLQLLPTFVDSCEC*
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