Ggra1618.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1618.t1
Unique NameGgra1618.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length490
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000146_piloncontigtig00000146_pilon:313794..315263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1618Ggra1618Gracilaria gracilis GNS1m malegenetig00000146_pilon 313794..315263 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1618.t1.stop1Ggra1618.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000146_pilon 313794..313796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1618.t1.CDS1Ggra1618.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000146_pilon 313794..315263 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1618.t1.exon1Ggra1618.t1.exon1Gracilaria gracilis GNS1m maleexontig00000146_pilon 313794..315263 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1618.t1.start1Ggra1618.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000146_pilon 315261..315263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1618.t1Ggra1618.t1Gracilaria gracilis GNS1m malepolypeptidetig00000146_pilon 313794..315263 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1618.t1 ID=Ggra1618.t1|Name=Ggra1618.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=490bp
MEEIGLIVSPSTWNVIKFVAFSLVLTPILEFLIHDITQRKATLDVLRGRS
VAFRDTRLGLFSLHGTFWGSNRNRFLLLIIGTMAIAMELLLEFSFSSIPR
TVATSRRVWMQPAHLQRYKFSSSSQPNLINEPVQFLADAADSNCAIQGDF
NLRRRVEPSSGHLQYALSGNYTVRSPYLDASDNETVLCSAEEVRKSGKFL
VPYVSFKQDNEDGVDLFNPPFVTGTGLHDNPEYSAVAFQVTRQPDILMGN
ISIALYVGRNSFCIKNVPSGDVEYVYYLCALRGKTAFAFAMGFWAEGDST
VTVKHAVMEMFGDAFKALHQERERQIRFLFILLFLHRDWHEHDTEISRYF
RKTALEQLFKIALLVANEDGVAGLRSSEQVKEMYVGETEMASMKPLGFIP
GALILFFLVVLVTCNILLWKRDTSAKSQAGNHTVEISLQWLRRQLLLDIN
EICNLSLSEQHFAYQLVRTNQSDERRLQLLPTFVDSCEC*
back to top

spliced messenger RNA

>Ggra1618.t1 ID=Ggra1618.t1|Name=Ggra1618.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00000146_pilon:313794..315263- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAAATCGGCCTCATTGTCTCACCTTCAACTTGGAATGTCATCAA
GTTCGTGGCTTTTTCGCTTGTGTTAACTCCCATTTTGGAATTTCTAATCC
ATGACATAACGCAGCGTAAAGCTACGCTGGATGTCCTCCGTGGCCGTTCC
GTCGCTTTTCGGGATACCCGTTTAGGTTTGTTTTCCCTACACGGAACCTT
TTGGGGATCAAACCGTAACCGCTTTCTTCTTTTGATCATTGGAACAATGG
CTATCGCTATGGAGCTCCTTCTAGAGTTCTCTTTCTCATCAATACCACGA
ACGGTGGCAACAAGCAGGCGCGTTTGGATGCAGCCCGCCCATCTACAGCG
ATACAAGTTTTCGAGTTCCTCTCAACCAAATCTTATCAATGAGCCCGTGC
AATTCTTGGCTGATGCTGCCGACTCGAATTGTGCAATACAAGGAGACTTT
AACTTGCGACGCCGCGTCGAGCCATCTAGTGGTCATCTACAATACGCTCT
AAGTGGTAACTACACTGTGCGCTCTCCATACCTTGACGCCAGTGACAATG
AAACGGTGTTATGTAGCGCTGAAGAAGTGCGAAAAAGTGGGAAGTTCTTA
GTACCGTATGTGTCGTTCAAGCAGGATAACGAAGATGGTGTTGACCTCTT
CAACCCTCCTTTTGTTACTGGTACGGGCCTCCATGATAATCCTGAGTACT
CCGCTGTAGCTTTTCAAGTGACGCGCCAGCCAGATATTCTTATGGGGAAC
ATCTCTATTGCGCTATATGTCGGCCGCAACTCGTTTTGTATAAAAAACGT
CCCATCTGGAGATGTGGAATACGTCTACTACCTGTGTGCATTGCGAGGAA
AAACAGCTTTTGCCTTCGCAATGGGGTTCTGGGCTGAGGGAGACAGTACC
GTCACGGTAAAGCACGCTGTTATGGAGATGTTTGGAGATGCTTTCAAGGC
TCTACACCAGGAAAGGGAGCGACAGATTCGCTTTCTCTTTATCCTGCTTT
TTTTGCACCGCGATTGGCATGAACACGATACAGAAATCAGTAGATATTTT
CGGAAGACTGCATTGGAACAGCTATTCAAAATAGCTCTATTGGTGGCGAA
CGAAGATGGTGTTGCAGGTTTACGGAGCTCAGAGCAAGTCAAAGAGATGT
ACGTTGGGGAGACTGAAATGGCTTCCATGAAGCCCCTTGGCTTCATACCT
GGAGCTTTAATATTATTCTTTCTTGTTGTTCTTGTGACATGTAACATCCT
TCTGTGGAAAAGAGATACCTCCGCCAAATCTCAAGCAGGCAACCATACGG
TTGAAATTTCGCTGCAATGGCTTCGAAGACAATTGTTACTGGATATAAAT
GAGATATGCAATCTCAGCCTGTCCGAACAACATTTTGCGTACCAGCTGGT
ACGCACCAACCAATCCGATGAACGGAGGCTACAGTTACTGCCAACTTTCG
TAGACAGTTGTGAATGCTAA
back to top

protein sequence of Ggra1618.t1

>Ggra1618.t1 ID=Ggra1618.t1|Name=Ggra1618.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=490bp
MEEIGLIVSPSTWNVIKFVAFSLVLTPILEFLIHDITQRKATLDVLRGRS
VAFRDTRLGLFSLHGTFWGSNRNRFLLLIIGTMAIAMELLLEFSFSSIPR
TVATSRRVWMQPAHLQRYKFSSSSQPNLINEPVQFLADAADSNCAIQGDF
NLRRRVEPSSGHLQYALSGNYTVRSPYLDASDNETVLCSAEEVRKSGKFL
VPYVSFKQDNEDGVDLFNPPFVTGTGLHDNPEYSAVAFQVTRQPDILMGN
ISIALYVGRNSFCIKNVPSGDVEYVYYLCALRGKTAFAFAMGFWAEGDST
VTVKHAVMEMFGDAFKALHQERERQIRFLFILLFLHRDWHEHDTEISRYF
RKTALEQLFKIALLVANEDGVAGLRSSEQVKEMYVGETEMASMKPLGFIP
GALILFFLVVLVTCNILLWKRDTSAKSQAGNHTVEISLQWLRRQLLLDIN
EICNLSLSEQHFAYQLVRTNQSDERRLQLLPTFVDSCEC*
back to top

mRNA from alignment at tig00000146_pilon:313794..315263-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1618.t1 ID=Ggra1618.t1|Name=Ggra1618.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00000146_pilon:313794..315263- (Gracilaria gracilis GNS1m male)
ATGGAAGAAATCGGCCTCATTGTCTCACCTTCAACTTGGAATGTCATCAA
GTTCGTGGCTTTTTCGCTTGTGTTAACTCCCATTTTGGAATTTCTAATCC
ATGACATAACGCAGCGTAAAGCTACGCTGGATGTCCTCCGTGGCCGTTCC
GTCGCTTTTCGGGATACCCGTTTAGGTTTGTTTTCCCTACACGGAACCTT
TTGGGGATCAAACCGTAACCGCTTTCTTCTTTTGATCATTGGAACAATGG
CTATCGCTATGGAGCTCCTTCTAGAGTTCTCTTTCTCATCAATACCACGA
ACGGTGGCAACAAGCAGGCGCGTTTGGATGCAGCCCGCCCATCTACAGCG
ATACAAGTTTTCGAGTTCCTCTCAACCAAATCTTATCAATGAGCCCGTGC
AATTCTTGGCTGATGCTGCCGACTCGAATTGTGCAATACAAGGAGACTTT
AACTTGCGACGCCGCGTCGAGCCATCTAGTGGTCATCTACAATACGCTCT
AAGTGGTAACTACACTGTGCGCTCTCCATACCTTGACGCCAGTGACAATG
AAACGGTGTTATGTAGCGCTGAAGAAGTGCGAAAAAGTGGGAAGTTCTTA
GTACCGTATGTGTCGTTCAAGCAGGATAACGAAGATGGTGTTGACCTCTT
CAACCCTCCTTTTGTTACTGGTACGGGCCTCCATGATAATCCTGAGTACT
CCGCTGTAGCTTTTCAAGTGACGCGCCAGCCAGATATTCTTATGGGGAAC
ATCTCTATTGCGCTATATGTCGGCCGCAACTCGTTTTGTATAAAAAACGT
CCCATCTGGAGATGTGGAATACGTCTACTACCTGTGTGCATTGCGAGGAA
AAACAGCTTTTGCCTTCGCAATGGGGTTCTGGGCTGAGGGAGACAGTACC
GTCACGGTAAAGCACGCTGTTATGGAGATGTTTGGAGATGCTTTCAAGGC
TCTACACCAGGAAAGGGAGCGACAGATTCGCTTTCTCTTTATCCTGCTTT
TTTTGCACCGCGATTGGCATGAACACGATACAGAAATCAGTAGATATTTT
CGGAAGACTGCATTGGAACAGCTATTCAAAATAGCTCTATTGGTGGCGAA
CGAAGATGGTGTTGCAGGTTTACGGAGCTCAGAGCAAGTCAAAGAGATGT
ACGTTGGGGAGACTGAAATGGCTTCCATGAAGCCCCTTGGCTTCATACCT
GGAGCTTTAATATTATTCTTTCTTGTTGTTCTTGTGACATGTAACATCCT
TCTGTGGAAAAGAGATACCTCCGCCAAATCTCAAGCAGGCAACCATACGG
TTGAAATTTCGCTGCAATGGCTTCGAAGACAATTGTTACTGGATATAAAT
GAGATATGCAATCTCAGCCTGTCCGAACAACATTTTGCGTACCAGCTGGT
ACGCACCAACCAATCCGATGAACGGAGGCTACAGTTACTGCCAACTTTCG
TAGACAGTTGTGAATGCTAA
back to top

Coding sequence (CDS) from alignment at tig00000146_pilon:313794..315263-

>Ggra1618.t1 ID=Ggra1618.t1|Name=Ggra1618.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1470bp|location=Sequence derived from alignment at tig00000146_pilon:313794..315263- (Gracilaria gracilis GNS1m male)
ATGGAAGAAATCGGCCTCATTGTCTCACCTTCAACTTGGAATGTCATCAA
GTTCGTGGCTTTTTCGCTTGTGTTAACTCCCATTTTGGAATTTCTAATCC
ATGACATAACGCAGCGTAAAGCTACGCTGGATGTCCTCCGTGGCCGTTCC
GTCGCTTTTCGGGATACCCGTTTAGGTTTGTTTTCCCTACACGGAACCTT
TTGGGGATCAAACCGTAACCGCTTTCTTCTTTTGATCATTGGAACAATGG
CTATCGCTATGGAGCTCCTTCTAGAGTTCTCTTTCTCATCAATACCACGA
ACGGTGGCAACAAGCAGGCGCGTTTGGATGCAGCCCGCCCATCTACAGCG
ATACAAGTTTTCGAGTTCCTCTCAACCAAATCTTATCAATGAGCCCGTGC
AATTCTTGGCTGATGCTGCCGACTCGAATTGTGCAATACAAGGAGACTTT
AACTTGCGACGCCGCGTCGAGCCATCTAGTGGTCATCTACAATACGCTCT
AAGTGGTAACTACACTGTGCGCTCTCCATACCTTGACGCCAGTGACAATG
AAACGGTGTTATGTAGCGCTGAAGAAGTGCGAAAAAGTGGGAAGTTCTTA
GTACCGTATGTGTCGTTCAAGCAGGATAACGAAGATGGTGTTGACCTCTT
CAACCCTCCTTTTGTTACTGGTACGGGCCTCCATGATAATCCTGAGTACT
CCGCTGTAGCTTTTCAAGTGACGCGCCAGCCAGATATTCTTATGGGGAAC
ATCTCTATTGCGCTATATGTCGGCCGCAACTCGTTTTGTATAAAAAACGT
CCCATCTGGAGATGTGGAATACGTCTACTACCTGTGTGCATTGCGAGGAA
AAACAGCTTTTGCCTTCGCAATGGGGTTCTGGGCTGAGGGAGACAGTACC
GTCACGGTAAAGCACGCTGTTATGGAGATGTTTGGAGATGCTTTCAAGGC
TCTACACCAGGAAAGGGAGCGACAGATTCGCTTTCTCTTTATCCTGCTTT
TTTTGCACCGCGATTGGCATGAACACGATACAGAAATCAGTAGATATTTT
CGGAAGACTGCATTGGAACAGCTATTCAAAATAGCTCTATTGGTGGCGAA
CGAAGATGGTGTTGCAGGTTTACGGAGCTCAGAGCAAGTCAAAGAGATGT
ACGTTGGGGAGACTGAAATGGCTTCCATGAAGCCCCTTGGCTTCATACCT
GGAGCTTTAATATTATTCTTTCTTGTTGTTCTTGTGACATGTAACATCCT
TCTGTGGAAAAGAGATACCTCCGCCAAATCTCAAGCAGGCAACCATACGG
TTGAAATTTCGCTGCAATGGCTTCGAAGACAATTGTTACTGGATATAAAT
GAGATATGCAATCTCAGCCTGTCCGAACAACATTTTGCGTACCAGCTGGT
ACGCACCAACCAATCCGATGAACGGAGGCTACAGTTACTGCCAACTTTCG
TAGACAGTTGTGAATGCTAA
back to top