Ggra1607.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1607.t1
Unique NameGgra1607.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length462
Homology
BLAST of Ggra1607.t1 vs. uniprot
Match: A0A2V3IMD5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD5_9FLOR)

HSP 1 Score: 419 bits (1078), Expect = 1.560e-140
Identity = 209/451 (46.34%), Postives = 306/451 (67.85%), Query Frame = 0
Query:    1 MDEPPISFLKQQDYWNNGLGGVVKEHLLQHQSYLNWSCSTMRLFTHSSGTDFNTFVSEIHQCT-NTSTGQIIDSPNCTCDIGIGGWFQTSSRFGLVDFLPPFAYDRYVAFTHVSEATVSGRVWFFMETFDGRAWGSILGLFMMFSFLKTLDKRFAVPAQYEPLPKTFSRFRRYGHYLTKSNLPFRMRKAIQSTVMRMLLLSDEPVVENGNTTRQWFLNLILAVSALFLVLSYEAAMTASLVQESIETKFQSAADLQSCRVDPSEICILRGGALETYWNRSIAIDECHIENPPNYINSYKELFEAVDDGRCKYAVVIESAITSAIREKYCGHFVVVGQPIWSGGLSMLLPKGSSLTEPMSRATLDLLGNQTSTAMDQYVNSLPQCKTKGDIVLTFNKLRPFFIIAYSFGVALLLTMVLIPQRPLEESVSKEASTRCTHAEQKRESSSTISLS 450
            M E PISF+  + + NNG+ G V E++ + Q +L W CS++ LF H + + FN F+ ++H+CT N STG  + S +C CDIGIGGWFQ   R+G VDFLPPF +DRY   THVS    SG + FF++TFD  +W +I+ L  +F+ LK LD RFAV   Y PL    SR RR  H+L K    +R+RKA QS+V R++L  D  VV+NG +TRQWFLNL++ + ALFLVLS+EA+MTASLVQE I + ++S  D +SC++ PS++C LRGGALE +WN +IA   CH  NP  Y+++Y+E+++ +  G+CK+++ +ES IT+ IR + CG  V++ +P+++ GLSM++PKGS+LTE MS+AT+ LL +Q S+ ++ ++   P+C  K    LTF KL+ FFI+A+S   A+L  M+L    P+++S +K A  R   ++  +  S + S S
Sbjct:    1 MHEAPISFINDRKFSNNGIDGAVSEYVSELQGFLGWRCSSVTLFQHQNTSGFNAFIEQMHECTTNQSTG--VSSNSCPCDIGIGGWFQNQFRYGKVDFLPPFVHDRYRVATHVSNTDASGEMPFFLKTFDSLSWITIVALTCIFTLLKLLDSRFAVAEPYTPLSGV-SRIRRCLHFLWKHPRLYRLRKAGQSSVTRLMLQPDNEVVDNGKSTRQWFLNLVIGICALFLVLSFEASMTASLVQEKITSTYESPEDFRSCKIPPSDVCALRGGALEMFWNTNIATSNCHNGNPIQYLSTYEEIYDGLASGKCKFSICLESVITTQIRTQSCGQLVLLEEPLYTSGLSMVVPKGSNLTEAMSKATMTLLLSQPSSFLESFLRKWPKCTKKVASTLTFRKLKLFFILAFSVCAAILFVMLLGSLYPVKKSANKRAIGRSVDSKSSKTDSGSASES 448          
BLAST of Ggra1607.t1 vs. uniprot
Match: A0A2V3IME4 (Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME4_9FLOR)

HSP 1 Score: 399 bits (1024), Expect = 9.040e-132
Identity = 197/416 (47.36%), Postives = 269/416 (64.66%), Query Frame = 0
Query:    1 MDEPPISFLKQQDYWNNGLGGVVKEHLLQHQSYLNWSCSTMRLFTHSSGTDFNTFVSEIHQCTNTSTGQIIDSPNCTCDIGIGGWFQTSSRFGLVDFLPPFAYDRYVAFTHVSEATVSGRVWFFMETFDGRAWGSILGLFMMFSFLKTLDKRFAVPAQYEPLPKTFSRFRRYGHYLTKSNLPFRMRKAIQSTVMRMLLLSDEPVVENGNTTRQWFLNLILAVSALFLVLSYEAAMTASLVQESIETKFQSAADLQSCRVDPSEICILRGGALETYWNRSIAIDECHIENPPNYINSYKELFEAVDDGRCKYAVVIESAITSAIREKYCGHFVVVGQPIWSGGLSMLLPKGSSLTEPMSRATLDLLGNQTSTAMDQYVNSLPQCKTKGDIVLTFNKLRPFFIIAYSFGVALLLTMVL 416
            +DEPPI+F+  + Y N G+ G++ ++L + Q YLNWSCS+++ +T    T FN FV  +  C  +  G + + P CTCDIGI GWFQ   RF  VDFLPPF  D Y    H+S + VSGR  FF+ TFD  AW SI GL ++FS +K  D++F     +E L +T  R +R+ H L K    +R R+A+QST  RM+LL D  VVEN    RQW LN +++VS LFL+LSYEA+MTASLVQE++   FQS  D Q+CR+ P+E+C+  GGALE +WN SIAI+ CH +  P + +SY ELF AVD+  CKY +++ES   +AI  KYCG  +   +PI+SGGL+M+LPK S+LT+ MS ATL +     +  ++QY  S+P+C    +  L F KLR FF IA   G  LLL  ++
Sbjct:   42 LDEPPIAFIDDRTYANGGVSGIIAQYLREMQGYLNWSCSSVQHYTGGKQTSFNHFVRMMEDC--SENGAVRNDPGCTCDIGISGWFQNHHRFRRVDFLPPFVTDGYEVVFHISNSEVSGRRMFFITTFDRLAWVSIFGLMLLFSAIKFFDRKFCPIDSFEALEETNPRIQRFVHVLMKYPTLYRFRRALQSTFSRMILLPDSDVVENQTANRQWVLNTVISVSGLFLILSYEASMTASLVQETVSAGFQSIQDFQTCRISPAEVCLPGGGALEMFWNTSIAIEVCHKQRQPFFASSYDELFHAVDNRTCKYGLLLESTANAAINSKYCGKLLAAEKPIYSGGLAMVLPKNSNLTDVMSYATLKITNEVATPGIEQYFASIPKCSINPETTLNFRKLRLFFGIALCTGAFLLLLRII 455          
BLAST of Ggra1607.t1 vs. uniprot
Match: A0A2V3IMD4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD4_9FLOR)

HSP 1 Score: 350 bits (897), Expect = 8.200e-112
Identity = 173/416 (41.59%), Postives = 263/416 (63.22%), Query Frame = 0
Query:    3 EPPISFLKQQDYWNNGLGGVVKEHLLQHQSYLNWSCSTMRLFTHSSGTDFNTFVSEIHQCTNTSTGQIIDSPNCTCDIGIGGWFQTSSRFGLVDFLPPFAYDRYVAFTHVSEATVSGRVWFFMETFDGRAWGSILGLFMMFSFLKTLDKRFAVPAQYEPLPKTFSRFRRYGHYLTKSNLPFRMRKAIQSTVMRMLLLSDEPVVENGNTTRQWFLNLILAVSALFLVLSYEAAMTASLVQESIETKFQSAADLQSCRVDPSEICILRGGALETYWNRSIAIDE-CHIENPPNYINSYKELFEAVDDGRCKYAVVIESAITSAIREKYCGHFVVVGQPIWSGGLSMLLPKGSSLTEPMSRATLDLLGNQTSTAMDQYVNSLPQCKTKGDIVLTFNKLRPFFIIAYSFGVALLLTMVLI 417
            EPPI+FL  ++Y N G+ G++  +L Q Q +LNW+CS+++ ++  S T FN F++ + +C  +  G I D P+C CDIGIGGWF  S RFG VDFLPPF YD Y    H+S++ VSGR  FF+ TFD R W  I GL ++F+ ++     F   A+Y+PL  T +  RR  H+L      +R+R +IQ    RM+L+ +       N T  W L  ++ +  LFL+L+YEA+MTAS+VQE++ ++FQS  D Q+CR+DP ++C+ RGG+ +TYW   +A +  CH    P+ + SY+E+F+ V++  C++ +++ES + S I  KYCG  +  G PI++GGL+M+LPK S  TE MS ATL +    T  +++++ ++   C  +    L F KL+ FFIIA+  G  L LT+V+I
Sbjct:   44 EPPIAFLNDRNYANLGIDGIIANYLNQMQGFLNWTCSSVQRYSDGSTTGFNNFITMMERC--SENGTIKDDPHCKCDIGIGGWFTNSKRFGRVDFLPPFVYDSYQVIFHISDSKVSGRSPFFITTFDSRGWLCIFGLVLLFATIRMFSA-FGDHARYQPLEPTVTPIRRIAHFLYNHPFFYRLRISIQRIFSRMILMPEPEDFSRPNNTFLWILKTVVTICGLFLILAYEASMTASIVQETVTSEFQSGKDFQTCRIDPKDVCLPRGGSFDTYWTEVLAKERPCHKGRSPHLMTSYEEVFQGVENRTCRFGILLESTVHSTIHRKYCGTILSNGNPIYTGGLAMVLPKDSMHTEVMSLATLKITDAATVPSLEEFYSTTGSCSAELATSLPFQKLQLFFIIAFCTGF-LFLTVVVI 455          
BLAST of Ggra1607.t1 vs. uniprot
Match: A0A2V3IUK7 (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 310 bits (795), Expect = 1.550e-97
Identity = 166/407 (40.79%), Postives = 249/407 (61.18%), Query Frame = 0
Query:    1 MDEPPISFLKQQDYWNNGLGGVVKEHLLQHQSYLNWSCSTMRLFTHSSGTDFNTFVSEIHQCTNTSTGQIIDSPNCTCDIGIGGWFQTSSRFGLVDFLPPFAYDRYVAFTHVSEATVSGRVWFFMETFDGRAWGSILGLFMMFSFLKTLDKRFA-VPAQYEPLPKTFSRFRRYGHYL-TKSNLPFRMRKAIQSTVMRMLLLSDEPVVENGNTTRQWFLNLILAVSALFLVLSYEAAMTASLVQESIETKFQSAADLQSCRVDPSEICILRGGALETYWNRSIAIDECHIENP-PNYIN-SYKELFEAVDDGRCKYAVVIESAITSAIREKYCGHFVVVGQPIWSGGLSMLLPKGSSLTEPMSRATLDLLGNQTSTAMDQYVNSLPQCKTKGDIVLTFNKLRPFFIIA 403
            + EPPI +L    Y NNG+ G++ ++L + Q+ L+W CS    +    GT FN F+  +  C  T  G I D P C C+IGIGGWF ++ R   VD LPPF YD      HVS    SG   FF+ TFD R+W  +  + ++F+  K LD+RFA +P+  EP     + + R  H+L T  N   R+  +I+ST +R++L SD  +V+N +    + LNLI+ +  L +VLSYEA+MTA+LVQE++ + +QS  DL++CR+ P ++C+  G A+ T+WN +IA  +CH E+   NY   S++E  +AV +G CK+ +V++S I  AI  KYCG  +  G+PI++GGLSM+LPK S+LT+ M  ATL L    ++ ++ QY  ++ +C      VLTF KL+  F+ A
Sbjct:   40 IHEPPIVYLDPNTYSNNGINGIITKYLTEMQALLDWQCSEFIPYVEGDGTSFNRFIDMMDNC--TQNGAIKDDPACRCEIGIGGWFNSADRDERVDLLPPFVYDGIRVTFHVSNTRRSGSKLFFVTTFDLRSWLCLFAIIILFALAKFLDERFAPIPSADEP--NAANSWGRCLHFLRTNWN---RLITSIRSTTLRIVLQSDHDIVQNQHGAHNFNLNLIIGIFGLLVVLSYEASMTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGGSAVLTFWNDAIAYGDCHRESKGKNYFRGSFEETLDAVKNGTCKFGLVLDSTIQEAIHGKYCGQLLSSGEPIYTGGLSMILPKNSNLTKAMRLATLKLRNEASAPSLQQYFQTMSKCAPITGSVLTFEKLQLLFVFA 439          
BLAST of Ggra1607.t1 vs. uniprot
Match: R7Q0P8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q0P8_CHOCR)

HSP 1 Score: 164 bits (414), Expect = 1.330e-43
Identity = 81/186 (43.55%), Postives = 121/186 (65.05%), Query Frame = 0
Query:   52 FNTFVSEIHQCTNTSTGQIIDSPNCTCDIGIGGWFQTSSRFGLVDFLPPFAYDRYVAFTHVSEATVSGRVWFFMETFDGRAWGSILGLFMMFSFLKTLDKRFAVPAQ-YEPLPKTFSRFRRYGHYLTKSNLPFRMRKAIQSTVMRMLLLSDEPVVENGNTTRQWFLNLILAVSALFLVLSYEAAMT 236
            FN+ V ++ +C  T  G + + P+C CD+ +GGW ++ +R G VDFLPPF  D     THV E +V+    FF+  F    WG ++ L ++F+FLK LD+RF  P   Y PLP +  R RR  HYL KS +P+R+RKA+QST+ RM+  S+   V +  ++RQW LNL++A  +LF++L+YE++MT
Sbjct:   93 FNSIVEKMDRCV-TEEGTMREDPDCNCDMAVGGWMESDTRLGKVDFLPPFLIDGIGIATHVDETSVASAGAFFLTAFSLAVWGLVVMLSVVFTFLKMLDRRFVPPDDSYTPLPASEPRLRRIRHYLLKSRIPYRLRKALQSTLSRMVGFSNSDPVTDKESSRQWVLNLVIACCSLFIILAYESSMT 277          
BLAST of Ggra1607.t1 vs. uniprot
Match: R7QE12 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QE12_CHOCR)

HSP 1 Score: 145 bits (367), Expect = 2.990e-38
Identity = 74/158 (46.84%), Postives = 102/158 (64.56%), Query Frame = 0
Query:   80 IGIGGWFQTSSRFGLVDFLPPFAYDRYVAFTHVSEATVSGRVWFFMETFDGRAWGSILGLFMMFSFLKTLDKRFAVPAQ-YEPLPKTFSRFRRYGHYLTKSNLPFRMRKAIQSTVMRMLLLSDEPVVENGNTTRQWFLNLILAVSALFLVLSYEAAMT 236
            + +GGWF+   RF  VDFLPPFA D      H    + +    FF+  F    W  I+GL  +F+FLK LD+RF  P + Y+PLP+T SR RR  HYL KS +P+R+RKA+QST+ RM+       +E   ++RQW LNL++A+ +LFL+L+YEAAMT
Sbjct:    1 MAVGGWFRNPERFRRVDFLPPFAIDGLSIVVHTDNTSSASAGAFFITAFSTTVWFFIVGLVCVFTFLKMLDRRFVPPDESYQPLPRTSSRVRRMKHYLLKSRIPYRLRKALQSTLSRMVGQGGYDPIEGKTSSRQWVLNLLIALCSLFLILTYEAAMT 158          
BLAST of Ggra1607.t1 vs. uniprot
Match: R7Q656 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q656_CHOCR)

HSP 1 Score: 92.8 bits (229), Expect = 1.850e-19
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 0
Query:  149 LDKRFAVPAQ-YEPLPKTFSRFRRYGHYLTKSNLPFRMRKAIQSTVMRMLLLSDEPVVENGNTTRQWFLNLILAVSALFLVLSYEAAMT 236
            LD+RF  P + Y+PLP+T SR RR  HYL KS +P+R+RKA+QST+ RM+       +E   ++RQW LNL++A+ +LFL+L+YE+AMT
Sbjct:    2 LDRRFVPPDESYQPLPRTSSRVRRMKHYLLKSRIPYRLRKALQSTMSRMVGQGGYDPIEGKTSSRQWVLNLLIALCSLFLILTYESAMT 90          
BLAST of Ggra1607.t1 vs. uniprot
Match: A0A158PB55 (Uncharacterized protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A158PB55_ANGCA)

HSP 1 Score: 65.1 bits (157), Expect = 1.420e-7
Identity = 78/307 (25.41%), Postives = 134/307 (43.65%), Query Frame = 0
Query:   79 DIGIGGWFQTSSRFGLVDFLPPFAY-DRYVAFTHVSEATVSGRVWFFMETFDGRAWGSILGLFMMFSFLKTLDKRFAVPAQYEPLPKTFSRFRRYGHYLTKSNLPFRMRKAIQSTVMRMLLLSDEPVVENGNTTRQWFLNLILAVSALFLVLSYEAAMTASLVQESIETKFQSAADLQSCRVDPSEICILRGGALETYWNRS-IAIDE-----CHIENPPNYINSYKELFEAVDDGRCKYAVVIESAITSAIREKYCGHFVVVGQPIWSGGLSMLLPKGSSLTEPMSRATLDLLGNQTSTAMDQYVN 378
            D+ +     T SR  +VDF  PF +    +      + T    ++ F+E      W S++G +++ SF+  L  RF+ P ++  + K   R R   +   + ++   +  ++ S     L+     V+     TR   + +I  +    L+ SY A + A L  E + T  +S ADL + +        L+ G+   ++  S I I E         +P  ++NS KE    V  G   YA ++ES++     E+ C     +G  + S G  + LPKGS L + +SR  L L   Q ST ++   N
Sbjct:  205 DVSVSAVTITYSRVEVVDFTLPFMHLGISILLAKTKDDTEKSSLFTFLEPLSLSVWFSLIGAYLIVSFMMYLLARFS-PYEWYDIEKIDGRDRSIENQKNQFSVLNSLWFSVGS-----LMQQGSDVIPRAAATR--IVAVIWWMFTQILISSYTAQLAAFLTVERMTTPIESTADLANQQ--KIRYGTLKSGSTMNFFKESRIPIYERMWSVMESASPTVFVNSSKEGIARVKAGN--YAYMMESSMLEYYMERDC-QLQRIGGLLDSKGYGIALPKGSPLRDILSRTVLQL---QESTILEALKN 495          
The following BLAST results are available for this feature:
BLAST of Ggra1607.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3IMD51.560e-14046.34Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IME49.040e-13247.36Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda... [more]
A0A2V3IMD48.200e-11241.59Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IUK71.550e-9740.79Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
R7Q0P81.330e-4343.55Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QE122.990e-3846.84Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q6561.850e-1951.69Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A158PB551.420e-725.41Uncharacterized protein n=1 Tax=Angiostrongylus ca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.70coord: 118..272
e-value: 1.5E-5
score: 26.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 441..461
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 428..461
NoneNo IPR availablePANTHERPTHR18966IONOTROPIC GLUTAMATE RECEPTORcoord: 53..415
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 214..234
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 235..398
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 399..417
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..213
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 418..461
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 77..368
NoneNo IPR availableTMHMMTMhelixcoord: 399..418

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000146_piloncontigtig00000146_pilon:38617..40332 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1607.t1Ggra1607.t1Gracilaria gracilis GNS1m malemRNAtig00000146_pilon 38617..40332 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1607.t1 ID=Ggra1607.t1|Name=Ggra1607.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=462bp
MDEPPISFLKQQDYWNNGLGGVVKEHLLQHQSYLNWSCSTMRLFTHSSGT
DFNTFVSEIHQCTNTSTGQIIDSPNCTCDIGIGGWFQTSSRFGLVDFLPP
FAYDRYVAFTHVSEATVSGRVWFFMETFDGRAWGSILGLFMMFSFLKTLD
KRFAVPAQYEPLPKTFSRFRRYGHYLTKSNLPFRMRKAIQSTVMRMLLLS
DEPVVENGNTTRQWFLNLILAVSALFLVLSYEAAMTASLVQESIETKFQS
AADLQSCRVDPSEICILRGGALETYWNRSIAIDECHIENPPNYINSYKEL
FEAVDDGRCKYAVVIESAITSAIREKYCGHFVVVGQPIWSGGLSMLLPKG
SSLTEPMSRATLDLLGNQTSTAMDQYVNSLPQCKTKGDIVLTFNKLRPFF
IIAYSFGVALLLTMVLIPQRPLEESVSKEASTRCTHAEQKRESSSTISLS
SSATDDVPLDT*
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