Ggra1607.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1607.t1
Unique NameGgra1607.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000146_piloncontigtig00000146_pilon:38617..40332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4565.Traes_6BL_3EC07F9F3.1
PFAMsANF_receptor,Lig_chan,SBP_bac_3
Max annot lvl35493|Streptophyta
Evalue0.000261
EggNOG OGsKOG1052@1|root,KOG1052@2759|Eukaryota,37K5G@33090|Viridiplantae,3GEFA@35493|Streptophyta,3M5H5@4447|Liliopsida,3IC7D@38820|Poales
DescriptionGlutamate-gated receptor that probably acts as non- selective cation channel
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1607Ggra1607Gracilaria gracilis GNS1m malegenetig00000146_pilon 38617..40332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1607.t1Ggra1607.t1Gracilaria gracilis GNS1m malepolypeptidetig00000146_pilon 38617..40332 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1607.t1.start1Ggra1607.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000146_pilon 38617..38619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1607.t1.CDS1Ggra1607.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000146_pilon 38617..38664 +
Ggra1607.t1.CDS2Ggra1607.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000146_pilon 38750..39278 +
Ggra1607.t1.CDS3Ggra1607.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000146_pilon 39366..39495 +
Ggra1607.t1.CDS4Ggra1607.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000146_pilon 39584..39724 +
Ggra1607.t1.CDS5Ggra1607.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000146_pilon 39795..40332 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1607.t1.exon1Ggra1607.t1.exon1Gracilaria gracilis GNS1m maleexontig00000146_pilon 38617..38664 +
Ggra1607.t1.exon2Ggra1607.t1.exon2Gracilaria gracilis GNS1m maleexontig00000146_pilon 38750..39278 +
Ggra1607.t1.exon3Ggra1607.t1.exon3Gracilaria gracilis GNS1m maleexontig00000146_pilon 39366..39495 +
Ggra1607.t1.exon4Ggra1607.t1.exon4Gracilaria gracilis GNS1m maleexontig00000146_pilon 39584..39724 +
Ggra1607.t1.exon5Ggra1607.t1.exon5Gracilaria gracilis GNS1m maleexontig00000146_pilon 39795..40332 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1607.t1.intron1Ggra1607.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000146_pilon 38665..38749 +
Ggra1607.t1.intron2Ggra1607.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000146_pilon 39279..39365 +
Ggra1607.t1.intron3Ggra1607.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000146_pilon 39496..39583 +
Ggra1607.t1.intron4Ggra1607.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000146_pilon 39725..39794 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1607.t1.stop1Ggra1607.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000146_pilon 40330..40332 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1607.t1 ID=Ggra1607.t1|Name=Ggra1607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=462bp
MDEPPISFLKQQDYWNNGLGGVVKEHLLQHQSYLNWSCSTMRLFTHSSGT
DFNTFVSEIHQCTNTSTGQIIDSPNCTCDIGIGGWFQTSSRFGLVDFLPP
FAYDRYVAFTHVSEATVSGRVWFFMETFDGRAWGSILGLFMMFSFLKTLD
KRFAVPAQYEPLPKTFSRFRRYGHYLTKSNLPFRMRKAIQSTVMRMLLLS
DEPVVENGNTTRQWFLNLILAVSALFLVLSYEAAMTASLVQESIETKFQS
AADLQSCRVDPSEICILRGGALETYWNRSIAIDECHIENPPNYINSYKEL
FEAVDDGRCKYAVVIESAITSAIREKYCGHFVVVGQPIWSGGLSMLLPKG
SSLTEPMSRATLDLLGNQTSTAMDQYVNSLPQCKTKGDIVLTFNKLRPFF
IIAYSFGVALLLTMVLIPQRPLEESVSKEASTRCTHAEQKRESSSTISLS
SSATDDVPLDT*
back to top

spliced messenger RNA

>Ggra1607.t1 ID=Ggra1607.t1|Name=Ggra1607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000146_pilon:38617..40332+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAACCTCCCATCAGCTTTCTTAAGCAGCAGGACTACTGGAATAA
TGGCCTGGGTGGTGTCGTCAAGGAACACTTGCTTCAACATCAATCTTATC
TCAACTGGAGTTGCTCAACAATGCGTCTCTTCACCCACTCAAGCGGCACT
GATTTCAACACTTTCGTTTCCGAAATTCACCAGTGTACCAACACATCAAC
TGGACAGATCATTGATTCTCCGAATTGCACTTGTGATATTGGTATCGGGG
GTTGGTTCCAAACCTCTAGTCGTTTTGGACTAGTTGACTTCCTGCCACCG
TTCGCGTACGATCGTTATGTCGCCTTTACCCATGTCTCTGAGGCCACTGT
ATCAGGGAGAGTTTGGTTTTTCATGGAGACATTTGATGGGAGAGCCTGGG
GATCGATTCTAGGTTTGTTCATGATGTTTTCATTCTTGAAGACTCTTGAC
AAGCGATTCGCTGTCCCTGCTCAATACGAACCACTACCGAAGACCTTTTC
GAGATTTCGACGGTACGGTCACTACTTGACGAAGAGTAATCTGCCGTTCA
GAATGAGGAAGGCCATTCAGAGCACAGttatgagaatgctgttgctatcg
gacgaacccgttgttgagaatggaaacaccacacgccaatggtttcttaa
tctaattcttgccgtatctgccctattcctcgtcctgtcttacgaggccg
ccatgacAGCATCTCTGGTACAAGAATCTATTGAAACCAAGTTTCAGTCC
GCTGCCGATCTGCAAAGTTGCCGTGTCGACCCTTCTGAGATATGCATACT
CCGTGGAGGTGCTCTGGAAACATATTGGAACAGGTCGATCGCTATTGACG
AATGCCATATTGAGAATCCACCGAACTATATCAATTCATACAAAGAATTA
TTTGAAGCTGTTGATGACGGGCGATGCAAGTATGCTGTTGTTATCGAATC
CGCCATCACGTCAGCAATTCGAGAAAAGTATTGCGGGCATTTCGTGGTCG
TCGGACAACCAATCTGGAGTGGTGGGCTGTCAATGCTACTCCCAAAAGGT
AGTAGCCTGACTGAGCCGATGAGTCGTGCTACACTTGATCTGTTGGGAAA
CCAGACGTCTACGGCTATGGACCAATACGTCAACAGCTTACCGCAGTGCA
AAACGAAGGGCGACATCGTCCTCACCTTCAACAAGCTTCGGCCGTTTTTC
ATCATTGCATATTCGTTTGGAGTGGCTTTGCTTCTGACAATGGTGCTCAT
TCCTCAACGGCCTTTGGAGGAATCAGTATCGAAGGAGGCATCTACTCGGT
GTACACACGCTGAACAGAAAAGAGAGTCGTCGAGCACAATAAGCCTCTCC
TCCAGCGCGACGGATGATGTTCCGCTAGACACATAA
back to top

protein sequence of Ggra1607.t1

>Ggra1607.t1 ID=Ggra1607.t1|Name=Ggra1607.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=462bp
MDEPPISFLKQQDYWNNGLGGVVKEHLLQHQSYLNWSCSTMRLFTHSSGT
DFNTFVSEIHQCTNTSTGQIIDSPNCTCDIGIGGWFQTSSRFGLVDFLPP
FAYDRYVAFTHVSEATVSGRVWFFMETFDGRAWGSILGLFMMFSFLKTLD
KRFAVPAQYEPLPKTFSRFRRYGHYLTKSNLPFRMRKAIQSTVMRMLLLS
DEPVVENGNTTRQWFLNLILAVSALFLVLSYEAAMTASLVQESIETKFQS
AADLQSCRVDPSEICILRGGALETYWNRSIAIDECHIENPPNYINSYKEL
FEAVDDGRCKYAVVIESAITSAIREKYCGHFVVVGQPIWSGGLSMLLPKG
SSLTEPMSRATLDLLGNQTSTAMDQYVNSLPQCKTKGDIVLTFNKLRPFF
IIAYSFGVALLLTMVLIPQRPLEESVSKEASTRCTHAEQKRESSSTISLS
SSATDDVPLDT*
back to top

mRNA from alignment at tig00000146_pilon:38617..40332+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1607.t1 ID=Ggra1607.t1|Name=Ggra1607.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1716bp|location=Sequence derived from alignment at tig00000146_pilon:38617..40332+ (Gracilaria gracilis GNS1m male)
ATGGATGAACCTCCCATCAGCTTTCTTAAGCAGCAGGACTACTGGAATGT
AAGTTCAACATCCTTTTGATTCATAGCAACTCGCGACGTTACTAACTTCT
GTACATTCCGAAACCAATACTGCGTCCTTTCAGAATGGCCTGGGTGGTGT
CGTCAAGGAACACTTGCTTCAACATCAATCTTATCTCAACTGGAGTTGCT
CAACAATGCGTCTCTTCACCCACTCAAGCGGCACTGATTTCAACACTTTC
GTTTCCGAAATTCACCAGTGTACCAACACATCAACTGGACAGATCATTGA
TTCTCCGAATTGCACTTGTGATATTGGTATCGGGGGTTGGTTCCAAACCT
CTAGTCGTTTTGGACTAGTTGACTTCCTGCCACCGTTCGCGTACGATCGT
TATGTCGCCTTTACCCATGTCTCTGAGGCCACTGTATCAGGGAGAGTTTG
GTTTTTCATGGAGACATTTGATGGGAGAGCCTGGGGATCGATTCTAGGTT
TGTTCATGATGTTTTCATTCTTGAAGACTCTTGACAAGCGATTCGCTGTC
CCTGCTCAATACGAACCACTACCGAAGACCTTTTCGAGATTTCGACGGTA
CGGTCACTACTTGACGAAGAGTAATCTGCCGTTCAGAATGAGGAAGGCCA
TTCAGAGCACAGGTATGTACAGAAATCAATTCACGCTCTTCTCATCTCCA
CATGTAGTACGTTAACTCTTTCAGGTCTTCTACTGTCTCAATACTGAagt
tatgagaatgctgttgctatcggacgaacccgttgttgagaatggaaaca
ccacacgccaatggtttcttaatctaattcttgccgtatctgccctattc
ctcgtcctgtcttacgaggccgccatgacgtaagttTTCTTGTTGGTGCA
TCATGCCTCCATGTTTGTTGTTACTCATATTTCTTACATCGACCATTTCT
ATTCTTTTATCATTCAGAGCATCTCTGGTACAAGAATCTATTGAAACCAA
GTTTCAGTCCGCTGCCGATCTGCAAAGTTGCCGTGTCGACCCTTCTGAGA
TATGCATACTCCGTGGAGGTGCTCTGGAAACATATTGGAACAGGTCGATC
GCTATTGAGTACGTTTCTCCTTTCTCCTTGTAACTGGGCATTCTTCTAAC
TGGATCTTTTTTCCCTATTTGTTCGCAGCGAATGCCATATTGAGAATCCA
CCGAACTATATCAATTCATACAAAGAATTATTTGAAGCTGTTGATGACGG
GCGATGCAAGTATGCTGTTGTTATCGAATCCGCCATCACGTCAGCAATTC
GAGAAAAGTATTGCGGGCATTTCGTGGTCGTCGGACAACCAATCTGGAGT
GGTGGGCTGTCAATGCTACTCCCAAAAGGTAGTAGCCTGACTGAGCCGAT
GAGTCGTGCTACACTTGATCTGTTGGGAAACCAGACGTCTACGGCTATGG
ACCAATACGTCAACAGCTTACCGCAGTGCAAAACGAAGGGCGACATCGTC
CTCACCTTCAACAAGCTTCGGCCGTTTTTCATCATTGCATATTCGTTTGG
AGTGGCTTTGCTTCTGACAATGGTGCTCATTCCTCAACGGCCTTTGGAGG
AATCAGTATCGAAGGAGGCATCTACTCGGTGTACACACGCTGAACAGAAA
AGAGAGTCGTCGAGCACAATAAGCCTCTCCTCCAGCGCGACGGATGATGT
TCCGCTAGACACATAA
back to top

Coding sequence (CDS) from alignment at tig00000146_pilon:38617..40332+

>Ggra1607.t1 ID=Ggra1607.t1|Name=Ggra1607.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1386bp|location=Sequence derived from alignment at tig00000146_pilon:38617..40332+ (Gracilaria gracilis GNS1m male)
ATGGATGAACCTCCCATCAGCTTTCTTAAGCAGCAGGACTACTGGAATAA
TGGCCTGGGTGGTGTCGTCAAGGAACACTTGCTTCAACATCAATCTTATC
TCAACTGGAGTTGCTCAACAATGCGTCTCTTCACCCACTCAAGCGGCACT
GATTTCAACACTTTCGTTTCCGAAATTCACCAGTGTACCAACACATCAAC
TGGACAGATCATTGATTCTCCGAATTGCACTTGTGATATTGGTATCGGGG
GTTGGTTCCAAACCTCTAGTCGTTTTGGACTAGTTGACTTCCTGCCACCG
TTCGCGTACGATCGTTATGTCGCCTTTACCCATGTCTCTGAGGCCACTGT
ATCAGGGAGAGTTTGGTTTTTCATGGAGACATTTGATGGGAGAGCCTGGG
GATCGATTCTAGGTTTGTTCATGATGTTTTCATTCTTGAAGACTCTTGAC
AAGCGATTCGCTGTCCCTGCTCAATACGAACCACTACCGAAGACCTTTTC
GAGATTTCGACGGTACGGTCACTACTTGACGAAGAGTAATCTGCCGTTCA
GAATGAGGAAGGCCATTCAGAGCACAGttatgagaatgctgttgctatcg
gacgaacccgttgttgagaatggaaacaccacacgccaatggtttcttaa
tctaattcttgccgtatctgccctattcctcgtcctgtcttacgaggccg
ccatgacAGCATCTCTGGTACAAGAATCTATTGAAACCAAGTTTCAGTCC
GCTGCCGATCTGCAAAGTTGCCGTGTCGACCCTTCTGAGATATGCATACT
CCGTGGAGGTGCTCTGGAAACATATTGGAACAGGTCGATCGCTATTGACG
AATGCCATATTGAGAATCCACCGAACTATATCAATTCATACAAAGAATTA
TTTGAAGCTGTTGATGACGGGCGATGCAAGTATGCTGTTGTTATCGAATC
CGCCATCACGTCAGCAATTCGAGAAAAGTATTGCGGGCATTTCGTGGTCG
TCGGACAACCAATCTGGAGTGGTGGGCTGTCAATGCTACTCCCAAAAGGT
AGTAGCCTGACTGAGCCGATGAGTCGTGCTACACTTGATCTGTTGGGAAA
CCAGACGTCTACGGCTATGGACCAATACGTCAACAGCTTACCGCAGTGCA
AAACGAAGGGCGACATCGTCCTCACCTTCAACAAGCTTCGGCCGTTTTTC
ATCATTGCATATTCGTTTGGAGTGGCTTTGCTTCTGACAATGGTGCTCAT
TCCTCAACGGCCTTTGGAGGAATCAGTATCGAAGGAGGCATCTACTCGGT
GTACACACGCTGAACAGAAAAGAGAGTCGTCGAGCACAATAAGCCTCTCC
TCCAGCGCGACGGATGATGTTCCGCTAGACACATAA
back to top