Ggra1566.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1566.t1
Unique NameGgra1566.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Homology
BLAST of Ggra1566.t1 vs. uniprot
Match: A0A2V3J0Q8 (U2 small nuclear ribonucleoprotein B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0Q8_9FLOR)

HSP 1 Score: 269 bits (687), Expect = 1.030e-87
Identity = 151/253 (59.68%), Postives = 166/253 (65.61%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKLRLRRLLHAACSPYGQVVHIVAEKSLALRGQAFITFQTQTSATAALRKLHATQFMGKQISVSYARSLSDKA-----GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVQEPP--------PVPVPAVPNRILFVQNLPPVVEREGKKLALVDVLSDLFARFAGFLEVRSVPGNDTIAFVEFGNETEAAVALSGLQQHPLGTPPQPITLSFANK 240
            MDAPAPCRTLYVRNLPDKLKK RLRRLLHAACSPYG+VVHIVAEKS+ LRGQAFITF TQ SATAALRKLHA++FMG  ISVSYAR+LSDKA     G                                                +   PP        P+  PAVPNRILFVQN+P  +++  KK  + DVLSDLFARFAGF+EVRSVPG  TIAFVEF +E EAAVALSGL  HPLG PPQPI +SFANK
Sbjct:    1 MDAPAPCRTLYVRNLPDKLKKHRLRRLLHAACSPYGRVVHIVAEKSIPLRGQAFITFHTQASATAALRKLHASEFMGNHISVSYARALSDKAASEKLGGDSTLSRNKRAAKRRADALAVKRDHIAAAEQQQQQHALASTAVPSSTAMPNAPPIVAAIVPHPIAAPAVPNRILFVQNIPTALDKHAKKELVSDVLSDLFARFAGFVEVRSVPGKHTIAFVEFSSEQEAAVALSGLNAHPLGDPPQPIHVSFANK 253          
BLAST of Ggra1566.t1 vs. uniprot
Match: R7QCR0 (\Probable U2 small nuclear ribonucleoprotein B (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCR0_CHOCR)

HSP 1 Score: 137 bits (344), Expect = 8.220e-38
Identity = 67/94 (71.28%), Postives = 81/94 (86.17%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKLRLRRLLHAACSPYGQVVHIVAEKSLALRGQAFITFQTQTSATAALRKLHATQFMGKQISVSYARSLSDKAGS 94
            MDA  PCRTLYVRNLPDKL K +LRRLLHAA +P+G VV IVAEK+L LRGQAFITF+ Q+SAT ALRK HAT+F+G+ +SV+YAR++SD+A S
Sbjct:    1 MDANPPCRTLYVRNLPDKLAKAKLRRLLHAAFTPHGHVVWIVAEKTLKLRGQAFITFEQQSSATQALRKTHATEFLGRVLSVTYARAVSDRAAS 94          
BLAST of Ggra1566.t1 vs. uniprot
Match: A0A2K1KBA5 (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KBA5_PHYPA)

HSP 1 Score: 120 bits (302), Expect = 6.430e-30
Identity = 117/244 (47.95%), Postives = 149/244 (61.07%), Query Frame = 0
Query:    2 DAPAPCRTLYVRNLPDKLKKLRLRRLLHAACSPYGQVVHIVAEKSLALRGQAFITFQTQTSATAALRKLHATQFMGKQISVSYARSLSD---KAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVQEPPPV--PVPAVPNRILFVQNLPPVVEREGKKLALVDVLSDLFARFAGFLEVRSVPGNDTIAFVEFGNETEAAVALSGLQQHPLGTPPQPITLSFANK 240
            D P P +T+Y+ NL +K+KK  L++ L+A  S +G+++ IVA K+L LRGQA++ F   T+AT+ALR++    F  K + + YA++ SD   KA          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           Q P PV    PA PN ILFVQNLP     E   LA    +  LF +F GF EVR +     IAFVEFG+E +A VAL GL    + TP Q + +S+A K
Sbjct:    5 DTP-PNQTIYINNLNEKVKKEELKKSLYAVFSQFGKIMDIVACKTLKLRGQAWVVFDDVTAATSALRQMQGFPFYDKPMRIQYAKTTSDAISKANGTYVPKEKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGVPPHASQQYQPPRPVVPEAPAPPNNILFVQNLP----HEATSLA----IQVLFQQFPGFKEVRMIEAKPGIAFVEFGDELQATVALQGLHNFKI-TPNQAMQVSYAKK 238          
BLAST of Ggra1566.t1 vs. uniprot
Match: C1MW81 (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MW81_MICPC)

HSP 1 Score: 117 bits (294), Expect = 6.960e-29
Identity = 94/239 (39.33%), Postives = 124/239 (51.88%), Query Frame = 0
Query:    2 DAPAPCRTLYVRNLPDKLKKLRLRRLLHAACSPYGQVVHIVAEKSLALRGQAFITFQTQTSATAALRKLHATQFMGKQISVSYARSLSDKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVQEPPPVPVPAVPNRILFVQNLPPVVEREGKKLALVDVLSDLFARFAGFLEVRSVPGNDTIAFVEFGNETEAAVALSGLQQHPLGTPPQPITLSFANK 240
            D P PC T+YV NL +K+KK  L++ LHA  S +G+++ +VA K+  LRGQA++ FQ   SATAA+R +    F  K + ++YA++ SD                              XXXXXXXXXXX           ++  P  P    PN ILFVQ LP        +     +LS LF +F GF EVR V     IAFVEF  ET+A+VAL GLQ   +  P   +TLS+A K
Sbjct:    3 DIP-PCPTIYVNNLNEKIKKEELKKSLHAVFSQFGKIIDVVAVKTYKLRGQAWVVFQDVASATAAMRAVQGFPFFDKPMKLAYAKAKSDATAKLDGTYDPSARDPEARAKRKAASQAEEXXXXXXXXXXXARGGGSAP---IRTDPSAP----PNEILFVQGLP--------EATTAAMLSMLFQQFPGFKEVRMVEAKPGIAFVEFTAETQASVALQGLQGFKIN-PTHSMTLSYAKK 224          
BLAST of Ggra1566.t1 vs. uniprot
Match: A0A7S0HCA2 (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HCA2_9EUKA)

HSP 1 Score: 117 bits (292), Expect = 4.130e-28
Identity = 92/251 (36.65%), Postives = 130/251 (51.79%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKLRLRRLLHAACSPYGQVVHIVAEKSLALRGQAFITFQTQTSATAALRKLHATQFMGKQISVSYARSLSDKA----GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVV-------QEPPPVPVPAVPNRILFVQNLPPVVEREGKKLALVDVLSDLFARFAGFLEVRSVPGNDTIAFVEFGNETEAAVALSGLQQHPLGTPPQPITLSFANK 240
            M  PAP  T+YV N+ +K+ K  L++ L+AA S +G ++ ++A K+  +RGQAF+ F+  T+AT A+R++    F  K + +SYA S SD      GS               XXXXXXXXXXX                     V        + PP  P  A+PN+ILFV+NLP  V           +LS LF +F GF EVR VPG   IAFVEF N+ ++  A+ GLQ   + TP   + +++A +
Sbjct:   30 MAEPAPRETIYVNNINEKVSKDELKKSLYAAFSQFGPILDVIALKTFKMRGQAFVVFRDITAATQAVRQMQGFPFYEKPMMISYANSKSDAVAKLDGSYEAKDKAERASKRKAXXXXXXXXXXXALAKPKEVAEAGVATPAVGEAVAAAPVERKKAPPSAPTVALPNQILFVENLPDQVNEM--------MLSMLFQQFPGFKEVRLVPGKAGIAFVEFENDVQSGTAMQGLQNFKI-TPTNLMKITYAKR 271          
BLAST of Ggra1566.t1 vs. uniprot
Match: A0A1Y1IC41 (Putative RNA recognition motif containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IC41_KLENI)

HSP 1 Score: 115 bits (287), Expect = 1.370e-27
Identity = 92/248 (37.10%), Postives = 131/248 (52.82%), Query Frame = 0
Query:    5 APCRTLYVRNLPDKLKKLRLRRLLHAACSPYGQVVHIVAEKSLALRGQAFITFQTQTSATAALRKLHATQFMGKQISVSYARSLSDKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVQE---------PPPVPVP---AVPNRILFVQNLPPVVEREGKKLALVDVLSDLFARFAGFLEVRSVPGNDTIAFVEFGNETEAAVALSGLQQHPLGTPPQPITLSFANK 240
            AP +T+YV NL +K+KK  +++ L+A  S +G+++ IV  K+L LRGQA++ F   T+AT ALR++    F  K + ++YA++ SD                                        XXXXXXXXXXX             PPP+ VP   A PN +LFV+NLP     E  KL    +LS LF +F GF EVR +     IAFVEF +E ++ VA+SGLQ + + TP  P+ +++A K
Sbjct:   11 APNQTIYVSNLNEKIKKEEMKKSLYAVFSQFGKILDIVNLKTLKLRGQAWVVFDDITAATNALRQMQGFPFYDKPMKIAYAKTKSDAVSKADGTFVPREKRKAIEEREKEKARKRAAAAGPVPAALXXXXXXXXXXXXXXXXXPAYGYGMPPPMAVPEAPAPPNNLLFVENLP----LEASKL----MLSTLFNQFPGFKEVRMIESKPGIAFVEFSDENQSTVAMSGLQGYRI-TPTNPMLITYAKK 249          
BLAST of Ggra1566.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein A-like n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C1A69 (LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein A-like n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C1A69)

HSP 1 Score: 112 bits (281), Expect = 6.890e-27
Identity = 103/244 (42.21%), Postives = 137/244 (56.15%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKLRLRRLLHAACSPYGQVVHIVAEKSLALRGQAFITFQTQTSATAALRKLHATQFMGKQISVSYARSLSDKA----GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVQEPPPVPVPAVPNRILFVQNLPPVVEREGKKLALVDVLSDLFARFAGFLEVRSVPGNDTIAFVEFGNETEAAVALSGLQQHPLGTPPQPITLSFANK 240
            MD P P +T+Y+ NL +K+KK  L++ L+A  S +G ++ IVA K+L +RGQAF+ F    SAT ALR +    F  K + + YA+S SD      G+       XXXXXXXXXXXXXXXXXXXX                     +Q+P    VPA+PN+ILF+  LP     E  ++    +L+ LF +F GF EVR VPG   IAFVEF NE +A  A   LQ   + TP   + ++FA K
Sbjct:    1 MDNP-PNQTIYINNLNEKVKKDELKKSLYAIFSQFGNILDIVAMKTLKMRGQAFVVFADIASATNALRSMQGFPFYDKPMRIQYAKSKSDAIAKLQGTYTPREKRXXXXXXXXXXXXXXXXXXXXQPNRAAPQVAMQPNMMPHMVPMQQPD---VPALPNKILFLTQLP----XETTQM----MLAMLFNQFPGFREVRLVPGKSDIAFVEFDNEIQAGTAKDALQGFKI-TPTNAMKITFAKK 231          
BLAST of Ggra1566.t1 vs. uniprot
Match: A0A2V0P6S2 (U2 small nuclear ribonucleoprotein B n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P6S2_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 7.420e-27
Identity = 99/238 (41.60%), Postives = 127/238 (53.36%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKLRLRRLLHAACSPYGQVVHIVAEKSLALRGQAFITFQTQTSATAALRKLHATQFMGKQISVSYARSLSDKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVQEPPPVPVPAVPNRILFVQNLPPVVEREGKKLALVDVLSDLFARFAGFLEVRSVPGNDTIAFVEFGNETEAAVALSGLQQHPLGTPPQPITLSFA 238
            MD P P +T+YV NL +KL K  L++ LHA  S +G++V +VA K+  LRGQA++ F    +AT+ALR +    F  K I + YAR  SD                               XXXXXXXXXXXXXXXXX              A PN+ILFVQNLP     E    A++ +L   F +F GF EVR + G   IAFVEF NE ++ VA+SGLQ   + TP   + +SFA
Sbjct:    1 MDIP-PNQTIYVHNLYEKLNKQELKKCLHAMFSQFGRIVDVVALKTYRLRGQAWVVFADVGAATSALRSMQGFPFFEKPIRIEYARGKSDAVAKLEGTYKPDKDRGRKNAAARESLKAKRTXXXXXXXXXXXXXXXXXPDGA----------APPNKILFVQNLP-----EATTDAMLGML---FQQFPGFREVRMIEGRPGIAFVEFENEMQSGVAMSGLQGFKV-TPTNAMAISFA 218          
BLAST of Ggra1566.t1 vs. uniprot
Match: K4GIR2 (U2 small nuclear ribonucleoprotein B-like protein n=8 Tax=Chondrichthyes TaxID=7777 RepID=K4GIR2_CALMI)

HSP 1 Score: 111 bits (278), Expect = 1.690e-26
Identity = 91/235 (38.72%), Postives = 123/235 (52.34%), Query Frame = 0
Query:    6 PCRTLYVRNLPDKLKKLRLRRLLHAACSPYGQVVHIVAEKSLALRGQAFITFQTQTSATAALRKLHATQFMGKQISVSYARSLSDKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVQEPPPVPVPAVPNRILFVQNLPPVVEREGKKLALVDVLSDLFARFAGFLEVRSVPGNDTIAFVEFGNETEAAVALSGLQQHPLGTPPQPITLSFANK 240
            P  T+Y+ N+ DK+KK  L+R L++  S +GQ+V IVA K++ +RGQAF+ F+   SAT+ LR+L    F GK + + YA++ SD              XXXXXXXXXXXX                           Q+ P  P    PN ILF+ NLP     E  ++    +LS LF +F GF EVR VPG   IAFVEF NE +A  A   LQ   + TP   + +++A K
Sbjct:    5 PNHTIYINNINDKIKKDELKRALYSLFSQFGQIVDIVALKTMKMRGQAFVIFKELCSATSGLRQLQGFPFYGKPMRIQYAKTDSDVTSKMRGTFADKEKXXXXXXXXXXXXSAANKKMNLGAAQPTTANSNQTTSSANQQVPDNP----PNYILFLTNLP----EETNEM----MLSMLFNQFPGFKEVRLVPGRHDIAFVEFENEGQAGAARDALQGFRI-TPSHAMKITYAKK 226          
BLAST of Ggra1566.t1 vs. uniprot
Match: A0A5B8MSV7 (U1 small nuclear ribonucleoprotein A n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MSV7_9CHLO)

HSP 1 Score: 111 bits (277), Expect = 2.680e-26
Identity = 81/246 (32.93%), Postives = 114/246 (46.34%), Query Frame = 0
Query:    1 MDAPAPCRTLYVRNLPDKLKKLRLRRLLHAACSPYGQVVHIVAEKSLALRGQAFITFQTQTSATAALRKLHATQFMGKQISVSYARSLSDKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVV------QEPPPVPVPAVPNRILFVQNLPPVVEREGKKLALVDVLSDLFARFAGFLEVRSVPGNDTIAFVEFGNETEAAVALSGLQQHPLGTPPQPITLSFANK 240
            +D   P +T+YV NL +KL K  LR+ LHA  S +G+++ IV  K+  LRGQA++ F+  TSAT ALR +    F  K + ++YA++ SD                                                    +      +EPP        + ILFVQNLPP   +         +++ LF +F GF EVR V     IAFVEFGNE E++VALSGLQ   + T    + +S+A K
Sbjct:    3 IDGSLPNQTVYVSNLYEKLSKDELRKSLHAVFSQFGKILDIVCMKNYRLRGQAWVVFEDITSATNALRLMQGFPFYDKPMKIAYAKTKSDAVAKLDGTYVSRDKAETARVNKEKREALQKRAAMRKGGSRPDQQAPFAAGAALAGTLDSEEPP--------HNILFVQNLPPATSQA--------MIAMLFEQFPGFKEVRMVETRPGIAFVEFGNEMESSVALSGLQGFQI-TKENSMRVSYAKK 231          
The following BLAST results are available for this feature:
BLAST of Ggra1566.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0Q81.030e-8759.68U2 small nuclear ribonucleoprotein B n=1 Tax=Graci... [more]
R7QCR08.220e-3871.28\Probable U2 small nuclear ribonucleoprotein B (Fr... [more]
A0A2K1KBA56.430e-3047.95Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
C1MW816.960e-2939.33Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S0HCA24.130e-2836.65Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A1Y1IC411.370e-2737.10Putative RNA recognition motif containing protein ... [more]
LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein A-like n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C1A696.890e-2742.21LOW QUALITY PROTEIN: U1 small nuclear ribonucleopr... [more]
A0A2V0P6S27.420e-2741.60U2 small nuclear ribonucleoprotein B n=1 Tax=Raphi... [more]
K4GIR21.690e-2638.72U2 small nuclear ribonucleoprotein B-like protein ... [more]
A0A5B8MSV72.680e-2632.93U1 small nuclear ribonucleoprotein A n=1 Tax=Chlor... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 158..236
e-value: 0.029
score: 20.2
coord: 9..83
e-value: 5.7E-13
score: 59.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 10..80
e-value: 3.0E-9
score: 36.6
coord: 159..224
e-value: 7.1E-5
score: 22.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 8..87
score: 15.169811
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 157..240
score: 10.411355
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 151..240
e-value: 5.7E-13
score: 50.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..98
e-value: 1.2E-23
score: 85.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..123
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 5..240
NoneNo IPR availablePANTHERPTHR10501:SF13U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Acoord: 5..240
NoneNo IPR availableCDDcd12247RRM2_U1A_likecoord: 156..236
e-value: 1.03121E-18
score: 75.6831
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 4..231

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:486467..487189 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1566.t1Ggra1566.t1Gracilaria gracilis GNS1m malemRNAtig00000844_pilon 486467..487189 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1566.t1 ID=Ggra1566.t1|Name=Ggra1566.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MDAPAPCRTLYVRNLPDKLKKLRLRRLLHAACSPYGQVVHIVAEKSLALR
GQAFITFQTQTSATAALRKLHATQFMGKQISVSYARSLSDKAGSDKLGGD
SKLTKKKRAAKRRADQQAAKRARVEAAANAAATQPAVSAPAVVQEPPPVP
VPAVPNRILFVQNLPPVVEREGKKLALVDVLSDLFARFAGFLEVRSVPGN
DTIAFVEFGNETEAAVALSGLQQHPLGTPPQPITLSFANK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf