Ggra1566.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1566.t1
Unique NameGgra1566.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:486467..487189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S87_109V6.1
PFAMsRRM_1
Max annot lvl35493|Streptophyta
KEGG koko:K11091,ko:K11094
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352
GOsGO:0000245,GO:0000354,GO:0000375,GO:0000377,GO:0000398,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0005686,GO:0005730,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0017069,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0035613,GO:0035614,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045292,GO:0046483,GO:0065003,GO:0070013,GO:0071005,GO:0071007,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Evalue6.6e-29
EggNOG OGsKOG4206@1|root,KOG4206@2759|Eukaryota,37HTB@33090|Viridiplantae,3G8MG@35493|Streptophyta
DescriptionU2 small nuclear ribonucleoprotein
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1566Ggra1566Gracilaria gracilis GNS1m malegenetig00000844_pilon 486467..487189 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1566.t1.stop1Ggra1566.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 486467..486469 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1566.t1.CDS1Ggra1566.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 486467..487189 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1566.t1.exon1Ggra1566.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 486467..487189 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1566.t1.start1Ggra1566.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 487187..487189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1566.t1Ggra1566.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 486467..487189 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1566.t1 ID=Ggra1566.t1|Name=Ggra1566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=241bp
MDAPAPCRTLYVRNLPDKLKKLRLRRLLHAACSPYGQVVHIVAEKSLALR
GQAFITFQTQTSATAALRKLHATQFMGKQISVSYARSLSDKAGSDKLGGD
SKLTKKKRAAKRRADQQAAKRARVEAAANAAATQPAVSAPAVVQEPPPVP
VPAVPNRILFVQNLPPVVEREGKKLALVDVLSDLFARFAGFLEVRSVPGN
DTIAFVEFGNETEAAVALSGLQQHPLGTPPQPITLSFANK*
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spliced messenger RNA

>Ggra1566.t1 ID=Ggra1566.t1|Name=Ggra1566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000844_pilon:486467..487189- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCGCCGGCGCCCTGCCGCACGCTATACGTGCGAAATCTACCCGA
CAAGCTGAAGAAGCTTCGGCTGCGGCGTCTCCTCCACGCCGCCTGCAGCC
CGTACGGCCAAGTCGTGCACATCGTCGCCGAGAAGTCGCTCGCGCTTCGC
GGCCAGGCCTTCATAACCTTCCAAACGCAGACGTCCGCCACCGCCGCGCT
GAGAAAACTGCACGCCACGCAATTTATGGGCAAGCAAATCTCCGTCAGCT
ATGCGCGCTCGTTGTCGGATAAGGCGGGCAGCGACAAGTTGGGCGGCGAC
TCCAAGCTCACCAAGAAGAAGAGGGCTGCGAAACGACGCGCCGATCAACA
GGCTGCGAAACGCGCGCGTGTTGAGGCGGCTGCGAACGCTGCCGCCACGC
AACCAGCTGTGAGTGCGCCTGCTGTCGTGCAAGAGCCACCGCCTGTGCCG
GTGCCTGCTGTGCCGAATCGAATTCTGTTTGTGCAGAACTTGCCGCCAGT
TGTGGAACGAGAGGGGAAGAAGCTTGCGTTGGTGGATGTGCTTTCGGATT
TGTTTGCGCGCTTTGCGGGCTTTCTTGAGGTTCGGTCTGTTCCGGGCAAT
GATACCATTGCGTTTGTTGAGTTTGGCAACGAAACGGAGGCTGCTGTTGC
ACTTTCGGGCTTGCAGCAACATCCGTTGGGCACTCCTCCTCAACCAATAA
CTCTTTCGTTTGCTAACAAATGA
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protein sequence of Ggra1566.t1

>Ggra1566.t1 ID=Ggra1566.t1|Name=Ggra1566.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MDAPAPCRTLYVRNLPDKLKKLRLRRLLHAACSPYGQVVHIVAEKSLALR
GQAFITFQTQTSATAALRKLHATQFMGKQISVSYARSLSDKAGSDKLGGD
SKLTKKKRAAKRRADQQAAKRARVEAAANAAATQPAVSAPAVVQEPPPVP
VPAVPNRILFVQNLPPVVEREGKKLALVDVLSDLFARFAGFLEVRSVPGN
DTIAFVEFGNETEAAVALSGLQQHPLGTPPQPITLSFANK*
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mRNA from alignment at tig00000844_pilon:486467..487189-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1566.t1 ID=Ggra1566.t1|Name=Ggra1566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000844_pilon:486467..487189- (Gracilaria gracilis GNS1m male)
ATGGACGCGCCGGCGCCCTGCCGCACGCTATACGTGCGAAATCTACCCGA
CAAGCTGAAGAAGCTTCGGCTGCGGCGTCTCCTCCACGCCGCCTGCAGCC
CGTACGGCCAAGTCGTGCACATCGTCGCCGAGAAGTCGCTCGCGCTTCGC
GGCCAGGCCTTCATAACCTTCCAAACGCAGACGTCCGCCACCGCCGCGCT
GAGAAAACTGCACGCCACGCAATTTATGGGCAAGCAAATCTCCGTCAGCT
ATGCGCGCTCGTTGTCGGATAAGGCGGGCAGCGACAAGTTGGGCGGCGAC
TCCAAGCTCACCAAGAAGAAGAGGGCTGCGAAACGACGCGCCGATCAACA
GGCTGCGAAACGCGCGCGTGTTGAGGCGGCTGCGAACGCTGCCGCCACGC
AACCAGCTGTGAGTGCGCCTGCTGTCGTGCAAGAGCCACCGCCTGTGCCG
GTGCCTGCTGTGCCGAATCGAATTCTGTTTGTGCAGAACTTGCCGCCAGT
TGTGGAACGAGAGGGGAAGAAGCTTGCGTTGGTGGATGTGCTTTCGGATT
TGTTTGCGCGCTTTGCGGGCTTTCTTGAGGTTCGGTCTGTTCCGGGCAAT
GATACCATTGCGTTTGTTGAGTTTGGCAACGAAACGGAGGCTGCTGTTGC
ACTTTCGGGCTTGCAGCAACATCCGTTGGGCACTCCTCCTCAACCAATAA
CTCTTTCGTTTGCTAACAAATGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:486467..487189-

>Ggra1566.t1 ID=Ggra1566.t1|Name=Ggra1566.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00000844_pilon:486467..487189- (Gracilaria gracilis GNS1m male)
ATGGACGCGCCGGCGCCCTGCCGCACGCTATACGTGCGAAATCTACCCGA
CAAGCTGAAGAAGCTTCGGCTGCGGCGTCTCCTCCACGCCGCCTGCAGCC
CGTACGGCCAAGTCGTGCACATCGTCGCCGAGAAGTCGCTCGCGCTTCGC
GGCCAGGCCTTCATAACCTTCCAAACGCAGACGTCCGCCACCGCCGCGCT
GAGAAAACTGCACGCCACGCAATTTATGGGCAAGCAAATCTCCGTCAGCT
ATGCGCGCTCGTTGTCGGATAAGGCGGGCAGCGACAAGTTGGGCGGCGAC
TCCAAGCTCACCAAGAAGAAGAGGGCTGCGAAACGACGCGCCGATCAACA
GGCTGCGAAACGCGCGCGTGTTGAGGCGGCTGCGAACGCTGCCGCCACGC
AACCAGCTGTGAGTGCGCCTGCTGTCGTGCAAGAGCCACCGCCTGTGCCG
GTGCCTGCTGTGCCGAATCGAATTCTGTTTGTGCAGAACTTGCCGCCAGT
TGTGGAACGAGAGGGGAAGAAGCTTGCGTTGGTGGATGTGCTTTCGGATT
TGTTTGCGCGCTTTGCGGGCTTTCTTGAGGTTCGGTCTGTTCCGGGCAAT
GATACCATTGCGTTTGTTGAGTTTGGCAACGAAACGGAGGCTGCTGTTGC
ACTTTCGGGCTTGCAGCAACATCCGTTGGGCACTCCTCCTCAACCAATAA
CTCTTTCGTTTGCTAACAAATGA
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