Ggra1553.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1553.t1
Unique NameGgra1553.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length967
Homology
BLAST of Ggra1553.t1 vs. uniprot
Match: A0A2V3J0M6 (DNA-directed RNA polymerase subunit beta n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0M6_9FLOR)

HSP 1 Score: 1714 bits (4438), Expect = 0.000e+0
Identity = 840/948 (88.61%), Postives = 893/948 (94.20%), Query Frame = 0
Query:    1 MTYSAPIYVDIKYARGPENVLCHKLMIGKIPIMLRSNNCILKGKSDRELAKLGECPLDPGGYFVVKGAEKVILMQEQLSKNRIIIEKDARGVIANVQSSTHERKSRTTLLVKGNKLYLNHNILDADINVAIVLRAMGIETDQEIIQLVGKEPRFVDGMTPTLHECAQEGIHTQVQALLYLGKKAKTFKSSSFGSGHRGGFSSTRSTTQSFKAPTTNTNSKGPPPHPRQKTIDHARELLAGVILAHVPVKHFDFWDKSIYIARMCRRVLQALDDPSTIDDKDYYGNKRLELAGQLLSLLFEDLFKKLNTDLKKTIDTQIQRIASKVAKDRSRRRMSDGTDIGRAIPRPNIDAPKYFRTDTITQGLEFAISTGNWNVKRFKMERAGVTEVLSRLSFISAVGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHVTTDDNPASLERLLYDLGVQPTYALSAEQLNENHVVVLNGLFLGVHSQPQKLTRYLRHLRRSGAVGEYVSVFEQPEQKTVHVACDGGRVTRPLIIVDRETGLPRVSDIHVEKVLKGLMGWKDLLQEGLIEYLDVNEENNTLIATYETDIVRGKTTHLEIAPWTILGICAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHMRTDTLLYLLSYPQRPLVQTKQIPVVGFERLPGGQNASLMVMSYSGYDIEDAVVLNRASIDRGYGRCIVTRKHAAGCRRHANGQCDRIMPGPEDPNIKSKN---GKPKVHPVYGALDDDGIVAPGEQVSSGMIFVNKEVPRVGLTDVPGESNMVTYRPQGLRFKGPSPVICDKVLLTSNDHDHVLVKVMLRETRRPELGDKFSSRHGQKGVCGLIVSQEDMPFSDMGIVPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEGRCGDGTAFHGDKVEVCAESLVRAGYNYNGKDFVYS 945
            +TYSAPIYVD+KY RG + VL  KLMIGKIPIMLRSNNC+LK KSDRELAKLGECPLDPGGYFVVKGAEKVILMQEQLSKNRIIIEKD RG++ANVQSSTHERKSRTTLL+KGN+LYLNHNIL+ DIN+AIVLRAMGIETDQEIIQL+GK+P+FVDGMTPTLHECAQEG+HT+ QALL++GKKAKTFKSSS G G R G+SS+R+ + SFK P   T+   P PHP+QKTIDHARELLAGVILAHVPVK F+FWDK+IY+ARMCRRVL A+DDPS +DDKDYYGNKRLELAGQLLSLLFEDLFKK N+DLKK++DTQIQRIASKVAKDR+RRR+SDGTD+GRAIPRPN+D  KYFRTDTITQGLEFAISTGNWNVKRFKMERAGVTEVLSRLSFISAVGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHVTTDDNPASLERLLYDLGVQPTYALSAEQLNENHVVVLNGLFLGVHSQP KLT YLRHLRR+GA+GEYVSVFEQPE K VHVACDGGRVTRPLIIVD ETG+PRV D HVEKVLKGLMGWKDLLQEGLIEYLDVNEENNT IATYETDI  GKTTHLEIAPWTILGICAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHMRTDTLLYLLSYPQRPLVQTKQIP+VGFERLPGGQNASLMVMSYSGYDIEDAVVLNRASIDRGYGRCIVTRKHA GCRR+ NGQCDRIMP PEDP  K +N   G+PK+HPVY +LD DGIVAPGEQ+S GM+FVNKEVPRVGLTDVPGE++ V+YRPQGL+FKGPSPV+CDKVLLTSNDHDHVLVKVMLRETRRPE+GDKFSSRHGQKGVCGLIVSQEDMPFSD GIVPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEG CGDGTAFHGDK+EVCA SLVRAGYNYNGKDFVYS
Sbjct:  137 ITYSAPIYVDVKYTRGSDLVLSQKLMIGKIPIMLRSNNCVLKNKSDRELAKLGECPLDPGGYFVVKGAEKVILMQEQLSKNRIIIEKDNRGLMANVQSSTHERKSRTTLLLKGNRLYLNHNILEVDINIAIVLRAMGIETDQEIIQLIGKDPKFVDGMTPTLHECAQEGVHTETQALLFIGKKAKTFKSSSSGFGSRTGYSSSRNASFSFKMPA-KTDPNEPVPHPKQKTIDHARELLAGVILAHVPVKQFNFWDKAIYMARMCRRVLLAMDDPSAVDDKDYYGNKRLELAGQLLSLLFEDLFKKFNSDLKKSVDTQIQRIASKVAKDRTRRRISDGTDLGRAIPRPNVDVSKYFRTDTITQGLEFAISTGNWNVKRFKMERAGVTEVLSRLSFISAVGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHVTTDDNPASLERLLYDLGVQPTYALSAEQLNENHVVVLNGLFLGVHSQPHKLTVYLRHLRRTGAIGEYVSVFEQPEHKVVHVACDGGRVTRPLIIVDTETGMPRVQDEHVEKVLKGLMGWKDLLQEGLIEYLDVNEENNTFIATYETDIEHGKTTHLEIAPWTILGICAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHMRTDTLLYLLSYPQRPLVQTKQIPIVGFERLPGGQNASLMVMSYSGYDIEDAVVLNRASIDRGYGRCIVTRKHATGCRRYPNGQCDRIMPAPEDPFRKEENSNSGRPKIHPVYSSLDLDGIVAPGEQLSKGMVFVNKEVPRVGLTDVPGETSAVSYRPQGLKFKGPSPVVCDKVLLTSNDHDHVLVKVMLRETRRPEIGDKFSSRHGQKGVCGLIVSQEDMPFSDKGIVPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEGHCGDGTAFHGDKIEVCAASLVRAGYNYNGKDFVYS 1083          
BLAST of Ggra1553.t1 vs. uniprot
Match: R7QMZ9 (DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMZ9_CHOCR)

HSP 1 Score: 1390 bits (3598), Expect = 0.000e+0
Identity = 697/950 (73.37%), Postives = 783/950 (82.42%), Query Frame = 0
Query:    2 TYSAPIYVDIKYARGPENVLCHKLMIGKIPIMLRSNNCILKGKSDRELAKLGECPLDPGGYFVVKGAEKVILMQEQLSKNRIIIEKDARGVIANVQSSTHERKSRTTLLVKGNKLYLNHNILDADINVAIVLRAMGIETDQEIIQLVGKEPRFVDGMTPTLHECAQEGIHTQVQALLYLGKKAKTFKSSSFGSGHRGGFSSTRSTTQSFKAPTTNTNSKGPPPHPRQKTIDHARELLAGVILAHVPVKHFDFWDKSIYIARMCRRVLQALDDPSTIDDKDYYGNKRLELAGQLLSLLFEDLFKKLNTDLKKTIDTQIQRIASKVAKDRSRRRMSDGTDIGRAIPRPNIDAPKYFRTDTITQGLEFAISTGNWNVKRFKMERAGVTEVLSRLSFISAVGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHVTTDDNPASLERLLYDLGVQPTYALSAEQLNENHVVVLNGLFLGVHSQPQKLTRYLRHLRRSGAVGEYVSVFEQPEQKTVHVACDGGRVTRPLIIVDRETGLPRVSDIHVEKVLKGLMGWKDLLQEGLIEYLDVNEENNTLIATYETDIVRGKTTHLEIAPWTILGICAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHMRTDTLLYLLSYPQRPLVQTKQIPVVGFERLPGGQNASLMVMSYSGYDIEDAVVLNRASIDRGYGRCIVTRKHAAGCRRHANGQCDRIMPGPEDPNIKSKNGKPKVHPVYGALDDDGIVAPGEQVSSGMIFVNKEVPR-VGLTDVPGESNMVT-----YRPQGLRFKGPSPVICDKVLLTSNDHDHVLVKVMLRETRRPELGDKFSSRHGQKGVCGLIVSQEDMPFSDMGIVPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEGRCGDGTAFHGDKVEVCAESLVRAGYNYNGKDFVYS 945
            TYSAPI VDIK+ RG + VL   L+IGKIPIMLRS NCIL  KSD+ELA +GECPLDPGGYFVV+G EKVIL+QEQLSKNRIIIE D RG+ ANVQSSTHERKSRTTL+VK  K+YL+HN L+AD+N+AIVLRAMG+ETDQEI+QL+G +PR+VDGM PTLHECAQEGI+T  QALL++GKKAKTF+  +FG                           GP P              AGVILAHVPVKHFDFWDK +++A+M RR+L A+DDPST+DDKDYYGNKRLELAGQLL+LLFEDLFKK NTDLK+TIDT I +  +K A+DRSR+R+                    FRTDTITQGLEFAISTGNW+VKRFKMER+GVTEVLSRLSFISA+GMMTRITSQFEKTRKVSGPRALQPSQWGMLCP+DTPEGEACGLVKNLALMTHVTTDD+PA LERLLYDLGVQPT  LS E++NEN VV LNGL LGVHSQP+KLT  LR +RR G +GEYVSVFEQPE K VH+ACDGGRVTRPLIIVD  TG PR+ D HV ++ KGLM W+DLL+EGLIEYLDV+EENNTLIATYE+DI+ GKTTH+EIAPWTILG+CAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQH+RTDTLLYLLSYPQRPLVQTK + +VGFERLPGGQNASLMVMSYSGYDIEDA+VLN+AS+DRG+GRCIV RKH++GCRR++NG CDRIMP  ++   K   G  + +    ALD DGI+APGE++  GMIFVNKEVP+   LT     + ++      YRPQ L FKGPS V  DKVLLTSND DHVLVKVMLRETRRPELGDKFSSRHGQKGVCGLIV+QEDMPFSD GIVPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEG+C  GTAF GD+++ CAESLV AGYNYNGKDFVYS
Sbjct:  138 TYSAPITVDIKHTRGDDIVLSRNLVIGKIPIMLRSGNCILSNKSDKELADVGECPLDPGGYFVVRGTEKVILIQEQLSKNRIIIENDQRGITANVQSSTHERKSRTTLIVKHGKIYLHHNTLEADVNIAIVLRAMGVETDQEIVQLIGTDPRYVDGMAPTLHECAQEGINTSTQALLFIGKKAKTFRGPAFG------------------------GRPGPRPS-------------AGVILAHVPVKHFDFWDKCVFVAQMLRRILIAMDDPSTVDDKDYYGNKRLELAGQLLALLFEDLFKKFNTDLKRTIDTHITKSQNKAARDRSRKRLD-------------------FRTDTITQGLEFAISTGNWHVKRFKMERSGVTEVLSRLSFISALGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPADTPEGEACGLVKNLALMTHVTTDDDPAPLERLLYDLGVQPTSILSGEEVNENDVVFLNGLILGVHSQPRKLTYRLREMRRKGFIGEYVSVFEQPEHKWVHIACDGGRVTRPLIIVDSVTGQPRIFDEHVSRLRKGLMVWRDLLEEGLIEYLDVSEENNTLIATYESDILPGKTTHIEIAPWTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHIRTDTLLYLLSYPQRPLVQTKTLELVGFERLPGGQNASLMVMSYSGYDIEDAIVLNKASLDRGFGRCIVIRKHSSGCRRYSNGSCDRIMPRMDEVGSKDNPGAVRRNERLSALDKDGIIAPGEKLEKGMIFVNKEVPQDTTLTGAAAAAAIIIGGPQEYRPQPLSFKGPSTVAADKVLLTSNDLDHVLVKVMLRETRRPELGDKFSSRHGQKGVCGLIVTQEDMPFSDKGIVPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEGKCRYGTAFDGDRLDECAESLVSAGYNYNGKDFVYS 1031          
BLAST of Ggra1553.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E13B7 (LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E13B7)

HSP 1 Score: 1170 bits (3028), Expect = 0.000e+0
Identity = 584/952 (61.34%), Postives = 727/952 (76.37%), Query Frame = 0
Query:    1 MTYSAPIYVDIKYARGPENVLCHKLMIGKIPIMLRSNNCILKGKSDRELAKLGECPLDPGGYFVVKGAEKVILMQEQLSKNRIIIEKDARGVIANVQSSTHERKSRTTLLVKGNKLYLNHNILDAD-INVAIVLRAMGIETDQEIIQLVGKEPRFVDGMTPTLHECAQEGIHTQVQALLYLGKKAKTFKSSSFGSGHRGGFSSTRSTTQSFKAPTTNTNSKGPPPHPRQKTIDHARELLAGVILAHVPVKHFDFWDKSIYIARMCRRVLQALDDPSTIDDKDYYGNKRLELAGQLLSLLFEDLFKKLNTDLKKTIDTQIQRIASKVAKD-RSRRRMSDGTDIGRAIPRPNIDAPKYFRTDTITQGLEFAISTGNWNVKRFKMERAGVTEVLSRLSFISAVGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHVTTDDNPASLERLLYDLGVQPTYALSAEQLNENHVVVLNGLFLGVHSQPQKLTRYLRHLRRSGAVGEYVSVFEQPEQKTVHVACDGGRVTRPLIIVDRETGLPRVSDIHVEKVLKGLMGWKDLLQEGLIEYLDVNEENNTLIATYETDIVRGKTTHLEIAPWTILGICAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHMRTDTLLYLLSYPQRPLVQTKQIPVVGFERLPGGQNASLMVMSYSGYDIEDAVVLNRASIDRGYGRCIVTRKHAAGCRRHANGQCDRIMPGPEDPNIKSKNGKPKVHPVYGALDDDGIVAPGEQVSSGMIFVNKEVP------RVGLTDVPGESNMVTYRPQGLRFKGPSPVICDKVLLTSNDHDHVLVKVMLRETRRPELGDKFSSRHGQKGVCGLIVSQEDMPFSDMGIVPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEGRCGDGTAFHGDKVEVCAESLVRAGYNYNGKDFVY 944
            +TYSAPI V +++ RG E V+   + IG IP+MLRSN C L  K++++LA LGECPLDPGGYFVV+G EKV+LMQEQLS+NRII+EKD +G+ A+VQSS HER++RTT++++  +LYL HN L+ D +N+AIV RA+G+E+D E++Q +G +  FVD + PT+ ECAQ GI T  QAL ++G + KTF++   G+  R                                 ID+AR+LLA  IL+H+P KHF+F +K +++A+M RR+L+A++DP+ +DDKDYYGNKR+EL GQL++LLFEDLFKK N+D+K++IDT IQ+  +   K  R   R+ + + + R+  R  +D  +  RTDTITQGLEFAISTGNW+VKR KMER+GVTEVLSRLSFISA+GMMTR+TSQFEKTRKVSGPR+LQPSQWGMLCPSDTPEGEACGLVKNLAL++HVT + +   L RLLYDLGVQ T  LS +++NE+H+V LNG  LG+HS+P  L   +R+LRR G + E++SVFE+ EQ+ V+VA D GR+ RPLIIVD  +G+PR+   H+ ++  G + W+DLL++G++E++DVNEENN  +AT+E +IV G+TTHLEIAP TILG+CAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQH RTDTLLYLL+YPQRPLVQT+ + +VGFERLPGGQNASL VMSYSGYDIEDA+VLN+AS+DRG+GRC V RK+A GCRR+  G  DRIMP P D +I       KV  V   L  DGI APG ++SSG IFVNKEVP      R G+           YR Q L +KG    + DKVL++SND DHVLVK M+R+TRRPE+GDKFSSRHGQKGVCGLI  QEDMPFSD GIVPDLIMNPHGFPSRMTVGKMIEF+AGKAGVFEGR  +GTAF GD VE CA +LV  GYNYNGKD  Y
Sbjct:  189 ITYSAPIEVTLRFTRGEELVVQKHVRIGCIPVMLRSNICTLYNKTEQDLASLGECPLDPGGYFVVRGTEKVVLMQEQLSRNRIIVEKDPKGISASVQSSAHERRTRTTVMMRNRRLYLQHNTLEQDGVNLAIVFRAIGVESDLEMLQFIGTDAEFVDALAPTIAECAQYGIRTATQALRHIGNRVKTFRAPFGGASKR--------------------------------KIDNARDLLANTILSHIPAKHFNFSEKVVFLAQMARRMLRAMNDPTLLDDKDYYGNKRIELPGQLIALLFEDLFKKFNSDMKRSIDTAIQKEQTHAGKALRKSGRIEEASQV-RSKYRSLVDVTRCIRTDTITQGLEFAISTGNWSVKRLKMERSGVTEVLSRLSFISALGMMTRVTSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALLSHVTVEADELPLVRLLYDLGVQSTSYLSGDEINESHIVFLNGNLLGIHSEPDVLAHRIRYLRRKGLIREFISVFERAEQQCVYVASDCGRICRPLIIVDPNSGVPRLRSDHLVRITGGTLTWRDLLEDGIVEFVDVNEENNCFVATWEVNIVPGRTTHLEIAPLTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHKRTDTLLYLLTYPQRPLVQTRTLTLVGFERLPGGQNASLAVMSYSGYDIEDAIVLNKASLDRGFGRCSVIRKNATGCRRYTTGVSDRIMPPPPDCDIS------KVVLVNSILTGDGIAAPGMKLSSGHIFVNKEVPADTAIQRNGVPSAMQIGQPAMYRAQPLVYKGHVTAVVDKVLVSSNDSDHVLVKTMIRDTRRPEIGDKFSSRHGQKGVCGLIAQQEDMPFSDRGIVPDLIMNPHGFPSRMTVGKMIEFVAGKAGVFEGRFRNGTAFDGDHVEECARALVARGYNYNGKDMFY 1101          
BLAST of Ggra1553.t1 vs. uniprot
Match: A0A1X6NUN4 (DNA-directed RNA polymerase subunit beta n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUN4_PORUM)

HSP 1 Score: 1138 bits (2944), Expect = 0.000e+0
Identity = 599/974 (61.50%), Postives = 718/974 (73.72%), Query Frame = 0
Query:    1 MTYSAPIYVDIKYARGPENVLCHKLMIGKIPIMLRSNNCILKGKSDRELAKLGECPLDPGGYFVVKGAEKVILMQEQLSKNRIIIEKDARGVI-ANVQSSTHERKSRTTLLVKGNKLYLNHNILDADINVAIVLRAMGIETDQEIIQLVGKEPRFVDGMTPTLHECAQEGIHTQVQALLYLGKKAKTFKSSS----FGSGHRGGFSSTRSTTQ----SFKAPTTNTNSKGPPPHPRQKTIDHARELLAGVILAHVPVKHFDFWDKSIYIARMCRRVLQALDDPSTIDDKDYYGNKRLELAGQLLSLLFEDLFKKLNTDLKKTIDTQIQRIASKVAKDRSRRRMSDGTDIGRAIPRPNIDAPKYFRTDTITQGLEFAISTGNWNVKRFKMERAGVTEVLSRLSFISAVGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHVTTDDNPASLERLLYDLGVQPTYALSAEQLNENH--VVVLNGLFLGVHSQPQKLTRYLRHLRRSGAVGEYVSVFEQPEQKTVHVACDGGRVTRPLIIVDRETGLPRVSDIHVEKVLKGLMGWKDLLQEGLIEYLDVNEENNTLIATYETDIVRGKTTHLEIAPWTILGICAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHMRTDTLLYLLSYPQRPLVQTKQIPVVGFERLPGGQNASLMVMSYSGYDIEDAVVLNRASIDRGYGRCIVTRKHAAGCRRHANGQCDRIMPGPEDPNIKSKNGKP----------KVHPVYGALDDDGIVAPGEQVSSGMIFVNKEVPR-----VGLTDVPGESNMVTYRPQGLRFKGPSPVICDKVLLTSNDHDHVLVKVMLRETRRPELGDKFSSRHGQKGVCGLIVSQEDMPFSDMGIVPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEGRCGDGTAFHGDKVEVCAESLVRAGYNYNGKDFVYSVET 948
            MTY+API  D++Y RG E VL     IG++PIMLRS +C L GK+D ELA LGECPLDPGGYFVV+G EKVIL+QEQLSKNRII+E DA+G + A+VQSSTHERKSRTT++VK  ++YL HN L  D+ V + LRAMG+ETDQE++QLVG    ++DG+ P+L ECA   I+T  QAL +LG+K ++ + +     FG           +TT     +   P+ N       P    K  +HAR+LLAGV+LAHVPV+ ++F DK IY+A+M RR+L A +DP+ IDDKDYYGNKRLELAGQLLSLLFEDLFKKL +D+K+  +    +         SRR    G  +         DA +  R DTITQGLEFAISTGNW+VKRFKMERAGVTEVLSRLSFI+A+GMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGE+CGLVKNLALMTHVTTDD+ A L RLLYDLG + T  LS  +LNE +  +V LNGL LGVH+ P  L   LR LRR   +GE+VSV+  P  + +++ACDGGRV RPLIIV    G+P V+D H+  + +G + W+DL+ +GLIEYLDVNEENN LIAT E +I+ G TTHLEIAP TILG+CAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQH R DTLLYLLSYPQRP+VQT+ + +VGF RLPGGQNASL VMSYSGYDIEDAVVLNRAS+DRG+GRC+V RKH++  RR+ N   DRIMP                        + +  Y ALD DG+V+PG ++ SG  + NKEVP       G +  PG +  + YR   L FKGP+  + +KVLLTS++ +H +VKVM+RETRRPELGDKFSSRHGQKGVCGLI  QED+PF+D G+ PDLIMNPHGFPSRMTVGKMIEFIAGKAGV EGR   GTAF GD++E CAE+LV AGY+Y+GKD  YS  T
Sbjct:   16 MTYAAPILADVQYVRGREVVLRRDWAIGRMPIMLRSEHCYLSGKTDAELAGLGECPLDPGGYFVVRGTEKVILIQEQLSKNRIIVEFDAKGCLCASVQSSTHERKSRTTIVVKAGRMYLRHNTLSEDVPVIVALRAMGVETDQEVVQLVGSGDMYMDGVEPSLQECASLNIYTSSQALDFLGQKVRSVRPAGGLQRFGGXXXXXXXXXXATTGVGMVADGVPSMN-------PAAVSKRKEHARDLLAGVVLAHVPVRRYNFRDKCIYMAQMMRRILAAAEDPTMIDDKDYYGNKRLELAGQLLSLLFEDLFKKLCSDIKRQAELHFSKQKKSDFSMPSRRGSGAGAGL-----MSGYDALQNVRGDTITQGLEFAISTGNWHVKRFKMERAGVTEVLSRLSFIAALGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTDDDSAPLARLLYDLGTEDTAQLSGAELNEGNGALVFLNGLILGVHANPPALAAALRALRRRALIGEFVSVWVHPPHRAIYIACDGGRVCRPLIIVSA-AGVPLVTDDHMTGIGRGTLVWRDLMHDGLIEYLDVNEENNALIATTEPEIMNG-TTHLEIAPLTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHCRADTLLYLLSYPQRPMVQTRTLDLVGFNRLPGGQNASLAVMSYSGYDIEDAVVLNRASVDRGFGRCVVLRKHSSTMRRYPNHTTDRIMPXXXXXXXXXXXXXXXXXXXXXXAARSNARYSALDQDGLVSPGARLKSGYFYANKEVPADTAVVQGGSAGPGRAP-IAYRAAPLIFKGPADAVAEKVLLTSSETEHFVVKVMVRETRRPELGDKFSSRHGQKGVCGLIAPQEDLPFNDAGVCPDLIMNPHGFPSRMTVGKMIEFIAGKAGVHEGRFRMGTAFDGDRIEDCAEALVAAGYSYSGKDLFYSGST 974          
BLAST of Ggra1553.t1 vs. uniprot
Match: A0A7S1XB87 (DNA-directed RNA polymerase subunit beta n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XB87_9RHOD)

HSP 1 Score: 1083 bits (2801), Expect = 0.000e+0
Identity = 564/956 (59.00%), Postives = 686/956 (71.76%), Query Frame = 0
Query:    1 MTYSAPIYVDIKYARGPENVLCHKLMIGKIPIMLRSNNCILKGKSDRELAKLGECPLDPGGYFVVKGAEKVILMQEQLSKNRIIIEKDARG-VIANVQSSTHERKSRTTLLVKGNKLYLNHNILDADINVAIVLRAMGIETDQEIIQLVGKEPRFVDGMTPTLHECAQE-GIHTQVQALLYLGKKAKTFKSSSFGSGHRGGFSSTRSTTQSFKAPTTNTNSKGPPPHPRQKTIDHARELLAGVILAHVPVKHFDFWDKSIYIARMCRRVLQALDDPSTIDDKDYYGNKRLELAGQLLSLLFEDLFKKLNTDLKKTIDTQIQRIASKVAKDRSRRRMSDGTDIGRAIPRPNIDAPKYFRTD-TITQGLEFAISTGNWNVKRFKMERAGVTEVLSRLSFISAVGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHVTTDDNPASLERLLYDLGVQPTYALSAEQLNE--NHVVVLNGLFLGVHSQPQKLTRYLRHLRRSGAVGEYVSVFEQPEQKTVHVACDGGRVTRPLIIVDRETGLPRVSDIHVEKVLKGLMGWKDLLQEGLIEYLDVNEENNTLIATYETDIVRGKTTHLEIAPWTILGICAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHMRTDTLLYLLSYPQRPLVQTKQIPVVGFERLPGGQNASLMVMSYSGYDIEDAVVLNRASIDRGYGRCIVTRKHAAGCRRHANGQCDRIMPGPE----DPNIKSKNGKPKVHPVYGALDDDGIVAPGEQVSSGMIFVNKEVPRVG--LTDVPGESNMVTYRPQGLRFKGPSPVICDKVLLTSNDHDHVLVKVMLRETRRPELGDKFSSRHGQKGVCGLIVSQEDMPFSDMGIVPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEGRCGDGTAFHGDKVEVCAESLVRAGYNYNGKDFVYS 945
            MTY+API VD++Y RG + VL H + IG++PIMLRS  CIL GK +  L  LGECPLDPGGYFV++G EKVIL+QEQLSKNRI++E D++G V ++VQSSTHERKSRT ++ K +  YL HN    DI V + L+AMGIETD EI QLVG E  +   M  T+ +   E  I T+ QAL Y+G + +  +                                GP  H ++   D ARE LA V+LAHVPV +F+FW K++++A+M RR++ A+ DP+ IDD+DYYGNKRLELAGQLLSLLFEDLFKK   DLK+  DT                      ++ + +    +D    FRT+ TI+QGLEFAISTGNW+VKRFKMERAGVT+VLSRLSFISAVGMMTRITSQFEKTRKVSGPR+LQPSQWGMLCPSDTPEGE+CGLVKNLALMTHVTTD +P+ + RL Y+LGV+  + L+  ++N   N V+ LNGL LG H QP KL   LR LRR G V E+VS+ E P Q  VH+A DGGRV RPLIIVD     PRV   H+++V+KG   W D L EGL+EYLDVNEENN LIA  E DI+  + THLEIAP  ILG+CAGLIPYPHHNQSPRNTYQCAMGKQAIGA+AYNQH RTDTLLYLLSYPQR LV+TK + +VGF+RLPGGQNA L VMS+SGYDIEDAV+LN+AS+DRG+GRC V RKH    R++ NG  DR++  PE      ++ S   + ++   + ALD DGI A G++V  G IF+NKE P     + + P  S  V YRP  + FKGP   I D+VL+TSN+ DH L+K ++RETR PE+GDKFSSRHGQKGVCGLIV Q+DMPF+D G+ PDLIMNPHGFPSRMTVGK+IEFI+GKA VF G+ GDG+AF GDK+EVCA  LVR G+++ GKD  YS
Sbjct:  123 MTYAAPITVDVQYTRGRDVVLRHDVPIGRMPIMLRSCRCILTGKDEVALGGLGECPLDPGGYFVIRGTEKVILIQEQLSKNRILVELDSKGQVCSSVQSSTHERKSRTMIVTKKDCFYLKHNNFTEDIPVTVALKAMGIETDHEITQLVGTEDIYASAMATTIAKATFELRIFTEQQALEYIGDRVRFARK----------------------------GKSGPRDHVKR---DLARETLAQVVLAHVPVPNFNFWQKAVFVAQMLRRMIAAVIDPTAIDDRDYYGNKRLELAGQLLSLLFEDLFKKFCQDLKRHADT----------------------NLSKPVKAGPLDITTAFRTNNTISQGLEFAISTGNWHVKRFKMERAGVTQVLSRLSFISAVGMMTRITSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTDADPSPIARLCYNLGVEDIHTLTGAEINNAFNAVITLNGLVLGCHRQPNKLGSDLRRLRRRGLVDEFVSICEVPSQNAVHIASDGGRVCRPLIIVDNMK--PRVHKGHIDEVVKGKRKWLDFLHEGLVEYLDVNEENNALIALDERDIIHDRYTHLEIAPLAILGVCAGLIPYPHHNQSPRNTYQCAMGKQAIGAVAYNQHQRTDTLLYLLSYPQRALVETKMVSLVGFDRLPGGQNACLCVMSFSGYDIEDAVILNQASVDRGFGRCTVVRKHGTTMRKYPNGSQDRVV-APEAVEVSDSMASSEARRQIR--FSALDVDGIAAAGDRVFPGSIFINKESPNDTSVIQEGPPGSKTVEYRPTPMTFKGPVEAIVDRVLITSNETDHFLIKAIIRETRTPEVGDKFSSRHGQKGVCGLIVQQQDMPFNDFGVCPDLIMNPHGFPSRMTVGKLIEFISGKAAVFSGKIGDGSAFGGDKLEVCAAELVRHGFSFTGKDLFYS 1020          
BLAST of Ggra1553.t1 vs. uniprot
Match: A0A5J4YYN6 (DNA-directed RNA polymerase subunit beta n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYN6_PORPP)

HSP 1 Score: 1048 bits (2711), Expect = 0.000e+0
Identity = 555/977 (56.81%), Postives = 682/977 (69.81%), Query Frame = 0
Query:    1 MTYSAPIYVDIKYARGPENVLCHKLMIGKIPIMLRSNNCILKGKSDRELAKLGECPLDPGGYFVVKGAEKVILMQEQLSKNRIIIEKDARGVI-ANVQSSTHERKSRTTLLVKGNKLYLNHNILDADINVAIVLRAMGIETDQEIIQLVGKEPRFVDGMTPTLHECAQEG--IHTQVQALLYLGKKAKTFKSSSFGSGHRGGFSSTRSTTQSFKAPTTNTNSKGPPPHPRQKTIDHARELLAGVILAHVPVKHFDFWDKSIYIARMCRRVLQALDDPSTIDDKDYYGNKRLELAGQLLSLLFEDLFKKLNTDLKKTIDTQIQRIASKVAKDRSRRRMSDGTDIGRAIPRPNIDAPKYFRTDTITQGLEFAISTGNWNVKRFKMERAGVTEVLSRLSFISAVGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHVTTDDNPASLERLLYDLGVQPTYALSAEQLNE--NHVVVLNGLFLGVHSQPQKLTRYLRHLRRSGAVGEYVSVFEQPEQKTVHVACDGGRVTRPLIIVDRETGLPRVSDIHVEKVLKGLMGWKDLLQEGLIEYLDVNEENNTLIATYETDIVRGKTTHLEIAPWTILGICAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHMRTDTLLYLLSYPQRPLVQTKQIPVVGFERLPGGQNASLMVMSYSGYDIEDAVVLNRASIDRGYGRCIVTRKHAAGCRRHANGQCDRIMPGPEDPNIKSKNGKPKVHPVYGALDDDGIVAPGEQVSSGMIFVNKEVP----------RVGLTDVPGESNM-----------------VTYRPQGLRFKGPSPVICDKVLLTSNDHDHVLVKVMLRETRRPELGDKFSSRHGQKGVCGLIVSQEDMPFSDMGIVPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEGRCGDGTAFHGDKVEVCAESLVRAGYNYNGKDFVYS 945
            +TY+API VD++Y +G   V      IG++PIMLRS NC L  K ++ELA+LGECPLDPGGYF++KG EKVIL+QEQLSKNRI++E D++G + A+VQSSTHERKSRT L+VK  + YL HN L  D+ V I+ +AMG+ ++ EI+Q VG E  F + + P++ ECA     + T+ +AL +LG K +   S +F   HR                           +  ++ +D ARE+LA +ILAHVPV +F+F  K + +A+M RR+L A  DP T+DD+DYYGNKRLELAGQLL+LLFEDLFKK  +DLK+  D  +                       + +     D    FR DTI+ GLEFAISTGNW VKRFKMERAGVT+VLSRLSFISA+GMMTRITSQFEKTRKVSGPR+LQPSQWGMLCPSDTPEGE+CGLVKNLALMTHVTTDD+   + R  Y+LGVQ    L+  +LN   NH+V LNGL +GVH  P++L   LRHLRR G +G++VSVF   +Q+TV +ACDGGRV RPLIIV +   L  V   H++++   L  W D L++G+IEYLDVNEENNT I+  E+ I  G TTHLEIAP+TILG+CAGLIP+PHHNQSPRNTYQCAMGKQAIGAIAYNQH R DTLLY LSYPQRPLVQTK I +VGF+RLPGGQNA L VMSYSGYDIEDAVVLNRAS+DRG+GRC V RKHA   + + NG CDRI      P++ S + K +    +  L+ DG+   G+++  G IFVNKE P          +  L  +PG                     V YRP  L +KG    I DKV+ T+N+ DH L+KV++RETR PELGDKFSSRHGQKGVCGLI  Q DMP++D G+ PDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEG   +GTAF G  V+ CA+ LV+AG++Y+GKD +YS
Sbjct:  197 ITYAAPITVDVEYTKGKMKVFKRDQPIGRMPIMLRSRNCRLWNKDEQELAELGECPLDPGGYFIIKGTEKVILIQEQLSKNRILVEYDSKGELCASVQSSTHERKSRTMLVVKHGRFYLRHNSLSEDVPVIILFKAMGMVSEAEIVQFVGTEQEFQEALVPSIEECASAAFNVRTEAEALEWLGAKVRV-SSKAF---HR--------------------------QYQSRRKLDQAREVLASIILAHVPVHNFNFKHKCVLVAQMIRRILIAKQDPETVDDRDYYGNKRLELAGQLLALLFEDLFKKFCSDLKRHADVVL----------------------AKPVVAAQFDIVTNFRQDTISAGLEFAISTGNWTVKRFKMERAGVTQVLSRLSFISALGMMTRITSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTDDDAEPVARFCYELGVQEVGILTGLELNHPRNHLVHLNGLIVGVHRYPKQLCEQLRHLRRLGRIGQFVSVFHSEKQRTVFLACDGGRVCRPLIIVHKGKSL--VQPRHLQELALKLRTWHDFLRDGIIEYLDVNEENNTFISWTESKIEAG-TTHLEIAPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQHHRVDTLLYFLSYPQRPLVQTKTISLVGFDRLPGGQNACLAVMSYSGYDIEDAVVLNRASLDRGFGRCCVVRKHATLLKTYPNGTCDRISA----PDLASMDEKRREK--HSVLESDGVAGVGQRLKPGQIFVNKESPVDTVTPATTNQAQLAFLPGGGASGGMRGSGAGSSGSAPATVAYRPTPLVYKGQEGGIVDKVVFTANEADHYLMKVLIRETRVPELGDKFSSRHGQKGVCGLIADQVDMPWNDQGVCPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEGVFNEGTAFEGCSVDDCAKLLVKAGFSYSGKDMMYS 1112          
BLAST of Ggra1553.t1 vs. uniprot
Match: A0A8J5XIQ9 (Uncharacterized protein n=6 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XIQ9_DIALT)

HSP 1 Score: 1019 bits (2634), Expect = 0.000e+0
Identity = 529/959 (55.16%), Postives = 671/959 (69.97%), Query Frame = 0
Query:    1 MTYSAPIYVDIKYARGPENVLCHK-LMIGKIPIMLRSNNCILKGKSDRELAKLGECPLDPGGYFVVKGAEKVILMQEQLSKNRIIIEKDARG-VIANVQSSTHERKSRTTLLVKGNKLYLNHNILDADINVAIVLRAMGIETDQEIIQLVGKEPRFVDGMTPTLHECAQEGIHTQVQALLYLGKKAKTFKSSSFGSGHRGGFSSTRSTTQSFKAPTTNTNSKGPPPHPRQKTIDHARELLAGVILAHVPVKHFDFWDKSIYIARMCRRVLQALDDPSTIDDKDYYGNKRLELAGQLLSLLFEDLFKKLNTDLKKTIDTQIQRIASKVAKDRSRRRMSDGTDIGRAIPRPNIDAPKYFRTDTITQGLEFAISTGNWNVKRFKMERAGVTEVLSRLSFISAVGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHVTTDDNPASLERLLYDLGVQPTYALSAEQLNENH---VVVLNGLFLGVHSQPQKLTRYLRHLRRSGAVGEYVSVFEQPEQKTVHVACDGGRVTRPLIIVDRETGLPRVSDIHVEKVLKGLMGWKDLLQEGLIEYLDVNEENNTLIATYETDIVRGKTTHLEIAPWTILGICAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHMRTDTLLYLLSYPQRPLVQTKQIPVVGFERLPGGQNASLMVMSYSGYDIEDAVVLNRASIDRGYGRCIVTRKHAAGCRRHANGQCDRIMPGPEDPNIKSKNGKPKVHPV--YGALDDDGIVAPGEQVSSGMIFVNKEVP-----RVGLTDVPGESNMVTYRPQGLRFKGPS--PVICDKVLLTSNDHDHVLVKVMLRETRRPELGDKFSSRHGQKGVCGLIVSQEDMPFSDMGIVPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEGRCGDGTAFHGDKVEVCAESLVRAGYNYNGKDFVYS 945
            +TYSAPI   ++Y RG + ++  + ++IG++PIMLRS+ C+L GKS  ELA++GECP+DPGGYFVV+G EKVIL+QEQLSKNRII+ KD +G V+A+V SSTHERKS+T L+  G  + L HN +  D+ + +VLRAMG+E+DQEI+QL+G EP +V+GM  +L E    G+ TQ +AL ++  K + F S  +GS  R                              Q  +D AR++LA V+LAHVPV  ++FW K +Y+ +M RR++ A  DPS IDD DYYGNKRLELAGQLLSLLFEDLFKKL  +LK+  D  + +     A                       D  K  R DTIT G   AISTGNW+VKRFKMER+GVT+VLSRLSFISA+GMMTRI SQFEKTRKVSGPR+LQPSQWGMLCPSDTPEGEACGLVKNLAL THVTTDD+ A + RL  +LGV+  + L       N    +V +NG+ LG+H  P +  R LR LRR G +GE+VSV   P Q+TVH+A D GRV RPLI+V  E G+P V+ +H+ ++ +G+  W+D ++EGLIEYLDVNEEN++ IA YE D V   TTHLEI P TILG+CAGLIPYPHHNQSPRNTYQCAMGKQA+GAIA NQH R DT+LYLL YP +PLV+++ I ++GF +LP G NA + VMSYSGYDIEDA++LNRAS+DRG+GRCIV RK++A  +++AN   DRI+  P      S  G  K   +  +  LD DGI A GE++ SG IFVNK+VP      +  T+    +    +RP  + +KGP       D+V+++SN++DH ++K+ +R TR PELGDKFSSRHGQKGVCGLIV  +DMPF+D G+ PD+IMNPHGFPSRMTVGKM+E +AGKA V +G    GTAF GDKV+ CA  LV+ G+NY GKDFV S
Sbjct:  114 ITYSAPIIASLEYTRGKKEIVRRRGMVIGRMPIMLRSSKCVLHGKSAEELARVGECPIDPGGYFVVRGVEKVILIQEQLSKNRIIVGKDNKGKVMASVTSSTHERKSKTNLVTNGGAILLRHNTMTEDVPIVVVLRAMGVESDQEILQLIGMEPTYVEGMAASLREAVVLGVTTQAKALDFISHKVRGF-SRPWGSSMR------------------------------QSRVDEARDVLANVVLAHVPVVAYNFWPKVVYVCQMLRRMISAQHDPSQIDDMDYYGNKRLELAGQLLSLLFEDLFKKLCAELKRQADAVLSKPTRAAA----------------------FDIAKCIRQDTITLGFSHAISTGNWSVKRFKMERSGVTQVLSRLSFISALGMMTRIMSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALTTHVTTDDDEAPIARLAMNLGVEDVHLLPGLDFGGNGRCTLVFINGMLLGMHRDPDRFVRSLRTLRRCGRLGEFVSVQLHPTQRTVHIAADAGRVCRPLIVV--EDGVPAVTPVHMSELAEGVRDWQDFIREGLIEYLDVNEENSSEIALYERD-VHADTTHLEIDPLTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGAIACNQHERIDTILYLLVYPHQPLVKSRTIDLIGFSKLPAGHNAVVAVMSYSGYDIEDALILNRASLDRGFGRCIVMRKYSANLKKYANQTSDRIVAPP------SATGAVKSVQLQRFRVLDADGICAVGERLQSGDIFVNKQVPVNTSDTITNTEALAGAGAEAFRPSPMSYKGPPHHDTYIDRVMISSNENDHFVIKIRVRSTRSPELGDKFSSRHGQKGVCGLIVGHQDMPFNDFGMAPDIIMNPHGFPSRMTVGKMMELLAGKAAVLDGHLRYGTAFGGDKVDDCASVLVKHGFNYAGKDFVTS 1010          
BLAST of Ggra1553.t1 vs. uniprot
Match: A0A7S3E745 (DNA-directed RNA polymerase subunit beta n=5 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E745_9RHOD)

HSP 1 Score: 1018 bits (2633), Expect = 0.000e+0
Identity = 549/976 (56.25%), Postives = 670/976 (68.65%), Query Frame = 0
Query:    1 MTYSAPIYVDIKYARGPENVLCHKLMIGKIPIMLRSNNCILKGKSDRELAKLG--------------------------ECPLDPGGYFVVKGAEKVILMQEQLSKNRIIIEKDARGVI-ANVQSSTHERKSRTTLLVKGNKLYLNHNILDADINVAIVLRAMGIETDQEIIQLVGKEPRFVDGMTPTLHECAQEGIHTQVQALLYLGKKAKTFKSSSFGSGHRGGFSSTRSTTQSFKAPTTNTNSKGPPPHPRQKTIDHARELLAGVILAHVPVKHFDFWDKSIYIARMCRRVLQALDDPSTIDDKDYYGNKRLELAGQLLSLLFEDLFKKLNTDLKKTIDTQIQRIASKVAKDRSRRRMSDGTDIGRAIPRPNIDAPKYFRTDTITQGLEFAISTGNWNVKRFKMERAGVTEVLSRLSFISAVGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHVTTDDNPASLERLLYDLGVQPTYALSAEQLNE--NHVVVLNGLFLGVHSQPQKLTRYLRHLRRSGAVGEYVSVFEQPEQKTVHVACDGGRVTRPLIIVDRETGLPRVSDIHVEKVLKGLMGWKDLLQEGLIEYLDVNEENNTLIATYETDIVRGKTTHLEIAPWTILGICAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHMRTDTLLYLLSYPQRPLVQTKQIPVVGFERLPGGQNASLMVMSYSGYDIEDAVVLNRASIDRGYGRCIVTRKHAAGCRRHA-NGQCDRIMPGPEDPNIKSKNGKPKVHPVYGALDDDGIVAPGEQVSSGMIFVNKEVPR-VGLTDVPGESNMVTYRPQGLRFKGPSPVICDKVLLTSNDHDHVLVKVMLRETRRPELGDKFSSRHGQKGVCGLIVSQEDMPFSDMGIVPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEGRCGDGTAFHGDKVEVCAESLVRAGYNYNGKDFVYS 945
            +TYSAPI VD++Y  G E V  + ++IG++PIMLR   C+L GK+D ELAKLG                          ECPLDPGGYF+VKG EKV+L QEQLSKNRII+E D++G++ A VQSSTHERKSRT +++K  K+YL HN +  DI V IV +AMG+E+DQEI+QLVG E  FV+  T +L E A   I TQ  AL Y+G + +                 TR   +S       TN               ARE LA  +LAHVPV  ++F  K +Y+A+M RR+L AL D S +DD+DYYGNKRLELAGQL++LLFEDLFK  NT++KK   TQ      + A+                      +    F    IT GLE +ISTGNW+V+RFKM+RAGVT+VLSRLSFISA+GMMTR+ SQFEKTRKVSGPR+LQPS WGMLCPSDTPEGEACGLVKNLALMTHVTTDD    +  LLY LG + T  +S +++N+  N +V LNGL LGVHS P  LT+  R LRR G +GE+VSV +   Q  ++VACDGGRV RPLIIV  E G P V+  H++++      W+D +Q+GLIEYLDVNEENN LIA  E  +  G T H+EIAP TILG+CAGLIP+P HNQSPRNTYQCAMGKQA+GAIAYNQH R DTLLYLL+YPQRP+V+T+ + +VG  RLPGGQNASL VMSYSGYDIEDAVVLN+AS+DRG+GRC V +K+    +R+  N   DR+ P        S   +P     Y ALD DGI  PGE++  G IFVNK+VP    LTD    S +  +R   + +K P     DKV++TSN+++  L+K M+RETRRPE+GDKFSSRHGQKGVCGLIV QEDMPFSD GI PDLIMNPHGFPSRMTVGK+IEF+ GKA VFEGR G+GTAF GDK++ CA +LV+AGY+Y GKDF YS
Sbjct:  138 ITYSAPITVDLQYTLGKEVVKQNGILIGRLPIMLRCCRCLLAGKNDLELAKLGSNWIRNMAVELHLANSIPLATCDNVGECPLDPGGYFIVKGTEKVVLTQEQLSKNRIIVEPDSKGLMSATVQSSTHERKSRTNIIMKAGKMYLKHNTIVEDIPVVIVFKAMGMESDQEIMQLVGSESEFVEAFTRSLEEAATLKILTQEAALAYVGARMRI----------------TRDMPRSLNR----TNL--------------AREFLAHTVLAHVPVVEYNFRSKCVYVAQMVRRILLALGDSSWVDDRDYYGNKRLELAGQLIALLFEDLFKTFNTEVKKRA-TQTLSKPHRAAQ---------------------FNIINLFPVSIITNGLESSISTGNWHVERFKMDRAGVTQVLSRLSFISALGMMTRVNSQFEKTRKVSGPRSLQPSTWGMLCPSDTPEGEACGLVKNLALMTHVTTDDEAGPVAELLYILGTEDTSVVSGDEINDKRNSLVYLNGLLLGVHSNPDALTKATRKLRRKGLIGEFVSVCQIEGQNAIYVACDGGRVCRPLIIV--ENGSPMVTQTHLDELKAKTRVWRDFVQDGLIEYLDVNEENNALIAVDEESVQEGST-HMEIAPLTILGVCAGLIPFPDHNQSPRNTYQCAMGKQAVGAIAYNQHRRVDTLLYLLTYPQRPMVETQVLTLVGGNRLPGGQNASLAVMSYSGYDIEDAVVLNKASLDRGFGRCCVIKKYTTSLKRYGKNNLRDRLAP-------LSATDRPSGSR-YEALDSDGIAPPGEKLVPGSIFVNKQVPSDAALTDAMTGS-VTEFRDAPVTYKAPVAGYVDKVVITSNENEDFLIKTMVRETRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFSDQGICPDLIMNPHGFPSRMTVGKLIEFVTGKAAVFEGRFGNGTAFAGDKIDECARALVKAGYSYTGKDFFYS 1045          
BLAST of Ggra1553.t1 vs. uniprot
Match: M2VX80 (DNA-directed RNA polymerase subunit beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VX80_GALSU)

HSP 1 Score: 1002 bits (2591), Expect = 0.000e+0
Identity = 519/957 (54.23%), Postives = 660/957 (68.97%), Query Frame = 0
Query:    1 MTYSAPIYVDIKYARGPENVLCHKLMIGKIPIMLRSNNCILKGKSDRELAKLGECPLDPGGYFVVKGAEKVILMQEQLSKNRIIIEKDARG-VIANVQSSTHERKSRTTLLVKGNKLYLNHNILDADINVAIVLRAMGIETDQEIIQLVG---KEPRFVDGMTPTLHECAQEGIHTQVQALLYLGKKAKTFKSSSFGSGHRGGFSSTRSTTQSFKAPTTNTNSKGPPPHPRQKTIDHARELLAGVILAHVPVKHFDFWDKSIYIARMCRRVLQALDDPSTIDDKDYYGNKRLELAGQLLSLLFEDLFKKLNTDLKKTIDTQIQRIASKVAKDRSRRRMSDGTDIGRAIPRPN----IDAPKYFRTDTITQGLEFAISTGNWNVKRFKMERAGVTEVLSRLSFISAVGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHVTTDDNPASLERLLYDLGVQPTYALSAEQLNE-NHV-VVLNGLFLGVHSQPQKLTRYLRHLRRSGAVGEYVSVFEQPEQKTVHVACDGGRVTRPLIIVDRETGLPRVSDIHVEKVLKGLMGWKDLLQEGLIEYLDVNEENNTLIATYETDIVRGKTTHLEIAPWTILGICAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHMRTDTLLYLLSYPQRPLVQTKQIPVVGFERLPGGQNASLMVMSYSGYDIEDAVVLNRASIDRGYGRCIVTRKHAAGCRRHANGQCDRIMPGPEDPNIKSKNGKPKVHPVYGALDDDGIVAPGEQVSSGMIFVNKEVPRVGLTDVPGESNM--VTYRPQGLRFKGPSPVICDKVLLTSNDHDHVLVKVMLRETRRPELGDKFSSRHGQKGVCGLIVSQEDMPFSDMGIVPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEGRCGDGTAFHGDKVEVCAESLVRAGYNYNGKDFVYS 945
            +TY+APIYVD++Y RG E ++   + IG+IPIMLRS++CIL GK D +LA LGECPLDPGGYF+++G E+VIL+QEQLSKNRIIIE+D +G   A V SSTHERKSRT+L+ K N +YL HN L  DI + IV +A+ +E+DQEI+QL+G   +E R    +     EC    +  + +AL Y+G + + F         R G+S  RS                        TI+ A+E+LAGVIL+H+P    +F +KSIY+A M RR+L   ++ +T+DDKDYYGNKRLELAGQLLSLLFEDLFKK N DLK+  D                            + +PN     D  K  R DTI+ GLE AI TGNW VKRF+M RAG+T+VLSRLS+I+A+GMMTRITSQFEKTRK+SGPR+LQ SQWG+LCPSDTPEGE+CGLVKNLAL  H+TTD     L RL Y LGV+     S ++LN  +H  + LNG FLG+H          R LRR GA+GE+VS+F    +  V+++CD GR+ RPLIIV  E G P+V+  ++E++ +  + + DL+Q+GL+EYLDVNEENN LIA  E +I    TTHLEI+P  ILG+CAG+IPYPHHNQSPRNTYQCAMGKQAIG I YNQH+RTDTLLYLL+Y Q+PLV TK I  + ++ LPGGQNA + VMSYSGYDIEDA++LNR+S+DRGYGRC V RKHA G RR+ NG CDR+   P            + H  +  L++DG+   G ++S G  +V KE P   +T +  + ++  V YRPQ   +KGP   + D+V++TSN   H L+KVM+RETR PE+GDKFSSRHGQKGVCGLIV QEDMPF++ GI PD+IMNPHGFPSRMTVGK++E +AGKAGV  G   +GTAF GD +E CA  LV+ G++Y GKDF+YS
Sbjct:  125 LTYAAPIYVDVRYTRGKEVLIRKDVAIGRIPIMLRSSHCILTGKKDGQLASLGECPLDPGGYFIIRGTERVILIQEQLSKNRIIIEEDKKGNYCATVTSSTHERKSRTSLVYKSNNIYLRHNSLVDDIPIWIVFKALEVESDQEIVQLIGLIEEEYRSYYFLLNHKKECISRHVQNRNEALEYIGSRVRLF---------RKGYSFRRS------------------------TIEEAQEVLAGVILSHIPTYQHNFRNKSIYLAFMVRRLLTVAENLTTVDDKDYYGNKRLELAGQLLSLLFEDLFKKFNADLKRHADM--------------------------VLSKPNRAAQFDIVKCMRPDTISVGLENAIGTGNWTVKRFRMHRAGITQVLSRLSYIAALGMMTRITSQFEKTRKISGPRSLQGSQWGLLCPSDTPEGESCGLVKNLALTAHITTDAEEEPLIRLCYILGVEDATLFSGDELNNPSHFRIFLNGKFLGIHRNASYFANIFRFLRRKGAIGEFVSIFVNEAENVVYLSCDSGRICRPLIIV--ENGKPKVTQQYIEQLERNQLEFTDLVQQGLVEYLDVNEENNALIALSEENIEPCSTTHLEISPLAILGVCAGVIPYPHHNQSPRNTYQCAMGKQAIGFIGYNQHLRTDTLLYLLTYAQKPLVNTKTISFIKYDELPGGQNAIVAVMSYSGYDIEDALILNRSSLDRGYGRCCVVRKHAFGLRRYPNGTCDRVCRPPS-----FSESSERTHMKFACLEEDGLPKVGGRLSPGQAYVYKETPMDTMTTMTSQQSIQQVGYRPQPFFYKGPDDAVIDRVVVTSNASTHALIKVMIRETRTPEVGDKFSSRHGQKGVCGLIVPQEDMPFNEQGICPDIIMNPHGFPSRMTVGKLLELMAGKAGVLSGEFKNGTAFDGDPLEDCASLLVQHGFSYTGKDFLYS 1015          
BLAST of Ggra1553.t1 vs. uniprot
Match: DNA-directed RNA polymerase III subunit RPC2-like n=3 Tax=Astrocoeniina TaxID=123757 RepID=UPI001CF4994B (DNA-directed RNA polymerase III subunit RPC2-like n=3 Tax=Astrocoeniina TaxID=123757 RepID=UPI001CF4994B)

HSP 1 Score: 1002 bits (2591), Expect = 0.000e+0
Identity = 526/955 (55.08%), Postives = 664/955 (69.53%), Query Frame = 0
Query:    1 MTYSAPIYVDIKYARGPENVLCHKLMIGKIPIMLRSNNCILKGKSDRELAKLGECPLDPGGYFVVKGAEKVILMQEQLSKNRIIIEKDARGVIA-NVQSSTHERKSRTTLLVKGNKLYLNHNILDADINVAIVLRAMGIETDQEIIQLVGKEPRFVDGMTPTLHECAQEGIHTQVQALLYLGKKAKTFKSSSFGSGHRGGFSSTRSTTQSFKAPTTNTNSKGPPPHPRQKTIDHARELLAGVILAHVPVKHFDFWDKSIYIARMCRRVLQALDDPSTIDDKDYYGNKRLELAGQLLSLLFEDLFKKLNTDLKKTIDTQIQRIASKVAKDRSRRRMSDGTDIGRAIPRPN---IDAPKYFRTDTITQGLEFAISTGNWNVKRFKMERAGVTEVLSRLSFISAVGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHVTTDDNPASLERLLYDLGVQPTYALSAEQLNEN--HVVVLNGLFLGVHSQPQKLTRYLRHLRRSGAVGEYVSVFEQPEQKTVHVACDGGRVTRPLIIVDRETGLPRVSDIHVEKVLKGLMGWKDLLQEGLIEYLDVNEENNTLIATYETDIVRGKTTHLEIAPWTILGICAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQHMRTDTLLYLLSYPQRPLVQTKQIPVVGFERLPGGQNASLMVMSYSGYDIEDAVVLNRASIDRGYGRCIVTRKHAAGCRRHANGQCDRIMPGPEDPNIKSKNGKPKVHPVYGALDDDGIVAPGEQVSSGMIFVNKEVPRVGLTDV----PGESNMVTYRPQGLRFKGPSPVICDKVLLTSNDHDHVLVKVMLRETRRPELGDKFSSRHGQKGVCGLIVSQEDMPFSDMGIVPDLIMNPHGFPSRMTVGKMIEFIAGKAGVFEGRCGDGTAFHGDKVEVCAESLVRAGYNYNGKDFVYS 945
            MTYSAPI VDI+Y RG + V+ H L IG++PIMLRS+NC+L GKS  ELA L ECP+DPGGYFV  G EKVIL+QEQLSKNRII+E D +G I  +V SST ERKSRT ++ KGNK  L HN L  D+ V +V +AMGIE +QEI+QLVG E   +    P+L EC +  I++Q+QAL YLG K +           R  +  +R+                         ++ ARELLAGV+LAHVPV  +DF  K +++A M RRV+ A  D + +DD+DYYGNKRLELAGQLLSLLFEDLFK+ N +LKK  D                          + IP+P     D  K+ R D IT GL  AIS+GNW +KRF M RAGVT+VLSRLSFISA+GMMTR+ SQFEKTRKVSGPR+LQPSQWGMLCPSDTPEGEACGLVKNLALMTH+TTD +   + RL Y+LGV+    LS E+++    +VV LNG  LGV    ++L    R +RR+G V E+VS+    + + V++A DGGRV RP IIV  + G P+V D H++++++G   ++D L EGL+EYLDVNEEN+  +A YE +I R +TTHLEI P+T+LG+CAGLIPYPHHNQSPRNTYQCAMGKQA+G+I YNQ  R DTLLY L YPQ PLV+TK I ++ F++LP GQNA++ VMSYSGYDIEDA++LN+AS+DRG+GRC+V RK     +R+AN   DR+M     P+  +  G+  V   + ALD DGI APGE++ +  + VNK +P V  T +    PG+     Y+   + +KGP  +  ++VL+TSN  +  L+K++ R+TRRPE+GDKFSSRHGQKGVCGLIV+QEDMPFSD+GI PD+IMNPHGFPSRMTVGK+IE +AGKAGV  G  G GTAF GDKVE    +LV  G+NY GK+FV S
Sbjct:  105 MTYSAPITVDIEYTRGKQRVVRHNLPIGRMPIMLRSSNCVLTGKSPAELAALNECPIDPGGYFVANGTEKVILIQEQLSKNRIIVEADKKGTIGCSVTSSTAERKSRTNIVTKGNKFCLKHNALSEDVPVVVVFKAMGIECEQEIVQLVGCEDDVISTFAPSLEECHKLHIYSQLQALQYLGSKVR----------QRATWGKSRT------------------------KVEEARELLAGVMLAHVPVIKYDFKPKCVFLALMVRRVILACSDEANVDDRDYYGNKRLELAGQLLSLLFEDLFKRFNNELKKIAD--------------------------QTIPKPRAAQFDIVKHMRQDQITNGLVHAISSGNWIIKRFNMHRAGVTQVLSRLSFISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDQDEEPIVRLAYNLGVENLRLLSGEEISHPSVYVVFLNGNILGVSGNYKRLVETFRLMRRAGYVNEFVSICPNHQHRFVNIASDGGRVCRPYIIV--KNGKPKVQDRHIQELVQGFRSFEDFLHEGLVEYLDVNEENDCSVALYEKEITR-ETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGSIGYNQRNRIDTLLYFLCYPQVPLVRTKTIDLIQFDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYRKQNCLLKRYANQTFDRVM----GPSRDASTGE--VIWRHRALDADGICAPGERIENKQVLVNKSMPIVSPTGLQPGTPGQPPQPEYKDVPVSYKGPRDIYVERVLVTSNADEAFLIKILERQTRRPEIGDKFSSRHGQKGVCGLIVNQEDMPFSDLGICPDIIMNPHGFPSRMTVGKLIELMAGKAGVLHGHFGYGTAFGGDKVEDVCNALVEKGFNYVGKEFVTS 990          
The following BLAST results are available for this feature:
BLAST of Ggra1553.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0M60.000e+088.61DNA-directed RNA polymerase subunit beta n=1 Tax=G... [more]
R7QMZ90.000e+073.37DNA-directed RNA polymerase subunit beta (Fragment... [more]
LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E13B70.000e+061.34LOW QUALITY PROTEIN: DNA-directed RNA polymerase I... [more]
A0A1X6NUN40.000e+061.50DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A7S1XB870.000e+059.00DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A5J4YYN60.000e+056.81DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A8J5XIQ90.000e+055.16Uncharacterized protein n=6 Tax=Diacronema lutheri... [more]
A0A7S3E7450.000e+056.25DNA-directed RNA polymerase subunit beta n=5 Tax=R... [more]
M2VX800.000e+054.23DNA-directed RNA polymerase subunit beta n=1 Tax=G... [more]
DNA-directed RNA polymerase III subunit RPC2-like n=3 Tax=Astrocoeniina TaxID=123757 RepID=UPI001CF4994B0.000e+055.08DNA-directed RNA polymerase III subunit RPC2-like ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10RNA polymerase Rpb2, domain 2coord: 86..279
e-value: 1.9E-41
score: 143.5
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 618..946
e-value: 2.5E-89
score: 300.1
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 619..948
e-value: 2.7E-120
score: 403.6
IPR014724RNA polymerase Rpb2, OB-foldGENE3D2.40.50.150coord: 649..844
e-value: 2.7E-120
score: 403.6
IPR007647RNA polymerase Rpb2, domain 5PFAMPF04567RNA_pol_Rpb2_5coord: 570..602
e-value: 2.0E-9
score: 38.1
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 80..289
e-value: 6.5E-18
score: 65.0
IPR007646RNA polymerase Rpb2, domain 4PFAMPF04566RNA_pol_Rpb2_4coord: 486..547
e-value: 1.8E-20
score: 72.9
NoneNo IPR availableGENE3D3.90.1070.20coord: 455..535
e-value: 7.4E-15
score: 56.3
NoneNo IPR availableGENE3D3.90.1100.10coord: 1..85
e-value: 1.6E-11
score: 45.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..230
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..224
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 1..948
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..945
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 1..321
e-value: 1.8E-34
score: 119.6
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 388..451
e-value: 4.2E-19
score: 68.5
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..948
IPR015712DNA-directed RNA polymerase, subunit 2CDDcd00653RNA_pol_B_RPB2coord: 1..945
e-value: 0.0
score: 761.338
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 848..860

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:436643..439602 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1553.t1Ggra1553.t1Gracilaria gracilis GNS1m malemRNAtig00000844_pilon 436643..439602 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1553.t1 ID=Ggra1553.t1|Name=Ggra1553.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=967bp
MTYSAPIYVDIKYARGPENVLCHKLMIGKIPIMLRSNNCILKGKSDRELA
KLGECPLDPGGYFVVKGAEKVILMQEQLSKNRIIIEKDARGVIANVQSST
HERKSRTTLLVKGNKLYLNHNILDADINVAIVLRAMGIETDQEIIQLVGK
EPRFVDGMTPTLHECAQEGIHTQVQALLYLGKKAKTFKSSSFGSGHRGGF
SSTRSTTQSFKAPTTNTNSKGPPPHPRQKTIDHARELLAGVILAHVPVKH
FDFWDKSIYIARMCRRVLQALDDPSTIDDKDYYGNKRLELAGQLLSLLFE
DLFKKLNTDLKKTIDTQIQRIASKVAKDRSRRRMSDGTDIGRAIPRPNID
APKYFRTDTITQGLEFAISTGNWNVKRFKMERAGVTEVLSRLSFISAVGM
MTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTH
VTTDDNPASLERLLYDLGVQPTYALSAEQLNENHVVVLNGLFLGVHSQPQ
KLTRYLRHLRRSGAVGEYVSVFEQPEQKTVHVACDGGRVTRPLIIVDRET
GLPRVSDIHVEKVLKGLMGWKDLLQEGLIEYLDVNEENNTLIATYETDIV
RGKTTHLEIAPWTILGICAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYN
QHMRTDTLLYLLSYPQRPLVQTKQIPVVGFERLPGGQNASLMVMSYSGYD
IEDAVVLNRASIDRGYGRCIVTRKHAAGCRRHANGQCDRIMPGPEDPNIK
SKNGKPKVHPVYGALDDDGIVAPGEQVSSGMIFVNKEVPRVGLTDVPGES
NMVTYRPQGLRFKGPSPVICDKVLLTSNDHDHVLVKVMLRETRRPELGDK
FSSRHGQKGVCGLIVSQEDMPFSDMGIVPDLIMNPHGFPSRMTVGKMIEF
IAGKAGVFEGRCGDGTAFHGDKVEVCAESLVRAGYNYNGKDFVYSVETYG
EGQDACTGEGSACNVD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037034RNA_pol_Rpb2_2_sf
IPR007120DNA-dir_RNAP_su2_dom
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR014724RNA_pol_RPB2_OB-fold
IPR007647RNA_pol_Rpb2_5
IPR007642RNA_pol_Rpb2_2
IPR007646RNA_pol_Rpb2_4
IPR007644RNA_pol_bsu_protrusion
IPR007645RNA_pol_Rpb2_3
IPR015712DNA-dir_RNA_pol_su2
IPR007121RNA_pol_bsu_CS