Ggra1533.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra1533.t1
Unique Name	Ggra1533.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	287

Homology

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BLAST of Ggra1533.t1 vs. uniprot
Match: A0A2V3J1T8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1T8_9FLOR)

HSP 1 Score: 110 bits (276), Expect = 5.510e-25
Identity = 80/233 (34.33%), Postives = 128/233 (54.94%), Query Frame = 0

Query:   63 RPIDSHELKLLKIQPSQISATDDSSQQAIFSALVGVCAAAVLVPPLFSPPPQVATGVTGVAALAMAAWALDALQLEGALQKAGWLALQSRRRVARHEAAHILVAHLLCMRVQRFEMPSVLRALRGRAGGAV----VSHRGADAYDTCAVAVAGTVAELRAFGDARGGVDDVEKALRVGGRW--------SVVYWGVVAADLLLKEHARALDALVEELVAGRCELPALLRLVDQ 283
            R +  +EL  L I P  + A + + ++A F+A + + A ++LVPPL    P  A  V   AA A++ WA+DAL L   L +A  LAL   RR+A HEAAH+LVA+LL      F++P+ L  +R      V    V+   + A++  AVA+AG VAE+  +G A GG DD  +A R+  +         +   WGV+ A  LL++H  A   L+  ++ G  +L + ++++++
Sbjct:   49 RLVGRYELARLSIPPDALLARNPN-EEAPFAAAIALVALSILVPPLIPNAPSSAPIVAXAAAAALSVWAVDALALNSLLSRALSLALVPARRIAAHEAAHLLVAYLLGFSPLTFQLPAPLTLIRDAESCGVEFENVTVTSSVAHELVAVALAGVVAEISQYGRAYGGNDDFVQARRLAKQAGFSEHQVRNTCRWGVLTAFQLLEQHDSAYQRLISAMIDG-ADLQSCVQIIER 279

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BLAST of Ggra1533.t1 vs. uniprot
Match: A0A7J7ILH9 (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ILH9_9RHOD)

HSP 1 Score: 66.2 bits (160), Expect = 7.310e-9
Identity = 68/253 (26.88%), Postives = 113/253 (44.66%), Query Frame = 0

Query:   63 RPIDSHELKLLKIQPSQ-----ISATDDSSQQAIFSALVGVCAAAVLVPPLFSPPP-QVATGVTGVAALA----MAAWALDALQLEGALQKAGWLALQ---SRRRVARHEAAHILVAHLLCMRVQRFEMPSVLRALRGRAGGAVVSHRGADAYDTCA-------VAVAGTVAELRAFGDARGGVDDVEKALRVGGR---------WSVVYWGVVAADLLLKEHARALDALVEELVAGRCELPALLRLVDQHRA 286
            RP+   ELK    +P       I +  +S  +A+F  +VGV   A L P L      Q A G+    A+     M  WA D L L G +  A W+  +   + +RVA HEA H++V+HLL   ++ + +   L        G ++  + +    + +       +A++G  AE   FGDA GGV+D+    R   +          + V W ++AA  +   +   L+ + + L+AG+  L  +  L+D   A
Sbjct:   57 RPVGDWELKREIGKPDVDLRVLIGSRVESRNEAVFGVIVGVMTLAFLAPALAEASAVQGAQGLQNAVAVTSLGGMGLWAFDTLALRGRI--ASWVQRKWFTNPKRVAIHEAGHVIVSHLLGYSLEDYTLGGQLNGRFIGTTGVILKEQQSRETSSVSFSESFAMIALSGIAAEAIIFGDAEGGVEDLAALSRYFRQNEPFLNTDVQASVRWAMLAALRVCSTYRAQLEEIAQALLAGKSSLQCI-ELLDNRTA 306

The following BLAST results are available for this feature:

BLAST of Ggra1533.t1 vs. uniprot

BLAST of Ggra1533.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J1T8	5.510e-25	34.33	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
A0A7J7ILH9	7.310e-9	26.88	Uncharacterized protein n=1 Tax=Cyanidiococcus yan...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR037219	Peptidase M41-like	GENE3D	1.20.58.760	Peptidase M41	coord: 147..249 e-value: 5.9E-7 score: 31.5
IPR037219	Peptidase M41-like	SUPERFAMILY	140990	FtsH protease domain-like	coord: 151..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..66
None	No IPR available	PANTHER	PTHR33471	FAMILY NOT NAMED	coord: 79..270
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 11..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..10
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..286

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:337248..338108 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1533.t1	Ggra1533.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000844_pilon 337248..338108 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra1533.t1 ID=Ggra1533.t1|Name=Ggra1533.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=287bp
MTLFFVTHALPPRAPVARAAPRRAPATTCTAPPPPSTSPPPPSPSPPPKR
VSPPKRARCPPKRPIDSHELKLLKIQPSQISATDDSSQQAIFSALVGVCA
AAVLVPPLFSPPPQVATGVTGVAALAMAAWALDALQLEGALQKAGWLALQ
SRRRVARHEAAHILVAHLLCMRVQRFEMPSVLRALRGRAGGAVVSHRGAD
AYDTCAVAVAGTVAELRAFGDARGGVDDVEKALRVGGRWSVVYWGVVAAD
LLLKEHARALDALVEELVAGRCELPALLRLVDQHRA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR037219	Peptidase_M41-like