Ggra1533.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1533.t1
Unique NameGgra1533.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:337248..338108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog91464.S7335_3934
PFAMsPeptidase_M41
Max annot lvl1117|Cyanobacteria
Evalue8.72e-06
EggNOG OGsCOG0465@1|root,COG0465@2|Bacteria,1G105@1117|Cyanobacteria,1H002@1129|Synechococcus
DescriptionActs as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1533Ggra1533Gracilaria gracilis GNS1m malegenetig00000844_pilon 337248..338108 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1533.t1.start1Ggra1533.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 337248..337250 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1533.t1.CDS1Ggra1533.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 337248..338108 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1533.t1.exon1Ggra1533.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 337248..338108 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1533.t1.stop1Ggra1533.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 338106..338108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1533.t1Ggra1533.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 337248..338108 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1533.t1 ID=Ggra1533.t1|Name=Ggra1533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=287bp
MTLFFVTHALPPRAPVARAAPRRAPATTCTAPPPPSTSPPPPSPSPPPKR
VSPPKRARCPPKRPIDSHELKLLKIQPSQISATDDSSQQAIFSALVGVCA
AAVLVPPLFSPPPQVATGVTGVAALAMAAWALDALQLEGALQKAGWLALQ
SRRRVARHEAAHILVAHLLCMRVQRFEMPSVLRALRGRAGGAVVSHRGAD
AYDTCAVAVAGTVAELRAFGDARGGVDDVEKALRVGGRWSVVYWGVVAAD
LLLKEHARALDALVEELVAGRCELPALLRLVDQHRA*
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spliced messenger RNA

>Ggra1533.t1 ID=Ggra1533.t1|Name=Ggra1533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000844_pilon:337248..338108+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTCTTCTTCGTCAcgcacgcgctgccgccccgcgcgcccgtcgc
gcgcgctgcgccgcgccgcgcgccTGCCACCACATGCACCGcgccgccgc
cgccgtcgacgtcgccgccgccgccgtcgccgtcgccgccgccAAAGCGC
GTCTCGCCGCCAAAGCGCGCGCGCTGCCCGCCAAAGCGGCCCATCGACAG
TCACGAGCTCAAGCTACTCAAGATCCAGCCGTCGCAAATCAGCGCCACGG
ACGACAGCTCGCAGCAAGCCATCTTCTCCGCGCTGGTTGGCGTGTGTGCG
GCCGCCGTGTTGGTACCGCCGCTCTTCAGCCCGCCGCCGCAGGTGGCGAC
GGGCGTGACGGGCGTGGCGGCGCTCGCAATGGCCGCGTGGGCGCTGGACG
CGCTGCAGCTGGAGGGCGCGCTGCAAAAGGCGGGCTGGCTGGCGTTGCAG
TCGCGCCGCCGCGTGGCGCGCCACGAGGCGGCGCACATCCTGGTGGCGCA
CCTGCTGTGCATGCGCGTGCAGCGCTTCGAGATGCCGTCCGTGCTACGCG
CGCTGCGCGGCCGTGCGGGCGGCGCCGTCGTCTCGCACCGCGGCGCCGAT
GCTTACGATACGTGCGCCGTCGCTGTTGCGGGCACGGTTGCCGAGCTGCG
CGCGTTTGGAGACGCGCGCGGCGGCGTGGACGATGTGGAAAAGGCGCTGC
GCGTGGGCGGCCGCTGGTCGGTGGTGTACTGGGGCGTGGTGGCGGCAGAC
TTGCTGCTCAAGGAGCATGCGCGCGCGCTCGACGCCTTGGTGGAGGAGCT
TGTGGCCGGCCGCTGCGAGCTGCCCGCGCTGCTGCGCCTTGTGGATCAGC
ACCGCGCTTGA
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protein sequence of Ggra1533.t1

>Ggra1533.t1 ID=Ggra1533.t1|Name=Ggra1533.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=287bp
MTLFFVTHALPPRAPVARAAPRRAPATTCTAPPPPSTSPPPPSPSPPPKR
VSPPKRARCPPKRPIDSHELKLLKIQPSQISATDDSSQQAIFSALVGVCA
AAVLVPPLFSPPPQVATGVTGVAALAMAAWALDALQLEGALQKAGWLALQ
SRRRVARHEAAHILVAHLLCMRVQRFEMPSVLRALRGRAGGAVVSHRGAD
AYDTCAVAVAGTVAELRAFGDARGGVDDVEKALRVGGRWSVVYWGVVAAD
LLLKEHARALDALVEELVAGRCELPALLRLVDQHRA*
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mRNA from alignment at tig00000844_pilon:337248..338108+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1533.t1 ID=Ggra1533.t1|Name=Ggra1533.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000844_pilon:337248..338108+ (Gracilaria gracilis GNS1m male)
ATGACGCTCTTCTTCGTCAcgcacgcgctgccgccccgcgcgcccgtcgc
gcgcgctgcgccgcgccgcgcgccTGCCACCACATGCACCGcgccgccgc
cgccgtcgacgtcgccgccgccgccgtcgccgtcgccgccgccAAAGCGC
GTCTCGCCGCCAAAGCGCGCGCGCTGCCCGCCAAAGCGGCCCATCGACAG
TCACGAGCTCAAGCTACTCAAGATCCAGCCGTCGCAAATCAGCGCCACGG
ACGACAGCTCGCAGCAAGCCATCTTCTCCGCGCTGGTTGGCGTGTGTGCG
GCCGCCGTGTTGGTACCGCCGCTCTTCAGCCCGCCGCCGCAGGTGGCGAC
GGGCGTGACGGGCGTGGCGGCGCTCGCAATGGCCGCGTGGGCGCTGGACG
CGCTGCAGCTGGAGGGCGCGCTGCAAAAGGCGGGCTGGCTGGCGTTGCAG
TCGCGCCGCCGCGTGGCGCGCCACGAGGCGGCGCACATCCTGGTGGCGCA
CCTGCTGTGCATGCGCGTGCAGCGCTTCGAGATGCCGTCCGTGCTACGCG
CGCTGCGCGGCCGTGCGGGCGGCGCCGTCGTCTCGCACCGCGGCGCCGAT
GCTTACGATACGTGCGCCGTCGCTGTTGCGGGCACGGTTGCCGAGCTGCG
CGCGTTTGGAGACGCGCGCGGCGGCGTGGACGATGTGGAAAAGGCGCTGC
GCGTGGGCGGCCGCTGGTCGGTGGTGTACTGGGGCGTGGTGGCGGCAGAC
TTGCTGCTCAAGGAGCATGCGCGCGCGCTCGACGCCTTGGTGGAGGAGCT
TGTGGCCGGCCGCTGCGAGCTGCCCGCGCTGCTGCGCCTTGTGGATCAGC
ACCGCGCTTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:337248..338108+

>Ggra1533.t1 ID=Ggra1533.t1|Name=Ggra1533.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00000844_pilon:337248..338108+ (Gracilaria gracilis GNS1m male)
ATGACGCTCTTCTTCGTCAcgcacgcgctgccgccccgcgcgcccgtcgc
gcgcgctgcgccgcgccgcgcgccTGCCACCACATGCACCGcgccgccgc
cgccgtcgacgtcgccgccgccgccgtcgccgtcgccgccgccAAAGCGC
GTCTCGCCGCCAAAGCGCGCGCGCTGCCCGCCAAAGCGGCCCATCGACAG
TCACGAGCTCAAGCTACTCAAGATCCAGCCGTCGCAAATCAGCGCCACGG
ACGACAGCTCGCAGCAAGCCATCTTCTCCGCGCTGGTTGGCGTGTGTGCG
GCCGCCGTGTTGGTACCGCCGCTCTTCAGCCCGCCGCCGCAGGTGGCGAC
GGGCGTGACGGGCGTGGCGGCGCTCGCAATGGCCGCGTGGGCGCTGGACG
CGCTGCAGCTGGAGGGCGCGCTGCAAAAGGCGGGCTGGCTGGCGTTGCAG
TCGCGCCGCCGCGTGGCGCGCCACGAGGCGGCGCACATCCTGGTGGCGCA
CCTGCTGTGCATGCGCGTGCAGCGCTTCGAGATGCCGTCCGTGCTACGCG
CGCTGCGCGGCCGTGCGGGCGGCGCCGTCGTCTCGCACCGCGGCGCCGAT
GCTTACGATACGTGCGCCGTCGCTGTTGCGGGCACGGTTGCCGAGCTGCG
CGCGTTTGGAGACGCGCGCGGCGGCGTGGACGATGTGGAAAAGGCGCTGC
GCGTGGGCGGCCGCTGGTCGGTGGTGTACTGGGGCGTGGTGGCGGCAGAC
TTGCTGCTCAAGGAGCATGCGCGCGCGCTCGACGCCTTGGTGGAGGAGCT
TGTGGCCGGCCGCTGCGAGCTGCCCGCGCTGCTGCGCCTTGTGGATCAGC
ACCGCGCTTGA
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